ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31e09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_471939.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 807 Score = 109 bits (55), Expect = 1e-20 Identities = 85/95 (89%) Strand = Plus / Minus Query: 554 tccaatttctctttctcaatttcaacttttctttcctcggcatgctgagcaacgccatta 613 ||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||| Sbjct: 788 tccaacttctctttctcaatttcaacttttctttcctcggcatgttgagctaagccattc 729 Query: 614 gccagtgcctggtagtgaaaatccagtgtctgcat 648 || |||||||||||| | ||||| || |||||||| Sbjct: 728 gcgagtgcctggtagcggaaatctagagtctgcat 694
>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08, complete sequence Length = 130521 Score = 109 bits (55), Expect = 1e-20 Identities = 85/95 (89%) Strand = Plus / Minus Query: 554 tccaatttctctttctcaatttcaacttttctttcctcggcatgctgagcaacgccatta 613 ||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||| Sbjct: 79687 tccaacttctctttctcaatttcaacttttctttcctcggcatgttgagctaagccattc 79628 Query: 614 gccagtgcctggtagtgaaaatccagtgtctgcat 648 || |||||||||||| | ||||| || |||||||| Sbjct: 79627 gcgagtgcctggtagcggaaatctagagtctgcat 79593 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 133 tcgtattggtaatccaccaataaccgcccaatcatatacactctaca 179 |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 80082 tcgtattgataatccaccaacaattgcccaatcatatacactctaca 80036 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 39 atacagagacatgcttcagcgatgttaacaaat 71 |||||||||||||||| ||| |||||||||||| Sbjct: 80170 atacagagacatgcttaagcaatgttaacaaat 80138
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 109 bits (55), Expect = 1e-20 Identities = 85/95 (89%) Strand = Plus / Minus Query: 554 tccaatttctctttctcaatttcaacttttctttcctcggcatgctgagcaacgccatta 613 ||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||| Sbjct: 15893122 tccaacttctctttctcaatttcaacttttctttcctcggcatgttgagctaagccattc 15893063 Query: 614 gccagtgcctggtagtgaaaatccagtgtctgcat 648 || |||||||||||| | ||||| || |||||||| Sbjct: 15893062 gcgagtgcctggtagcggaaatctagagtctgcat 15893028 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 133 tcgtattggtaatccaccaataaccgcccaatcatatacactctaca 179 |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 15893517 tcgtattgataatccaccaacaattgcccaatcatatacactctaca 15893471 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 39 atacagagacatgcttcagcgatgttaacaaat 71 |||||||||||||||| ||| |||||||||||| Sbjct: 15893605 atacagagacatgcttaagcaatgttaacaaat 15893573
>dbj|AK060427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A01, full insert sequence Length = 500 Score = 109 bits (55), Expect = 1e-20 Identities = 85/95 (89%) Strand = Plus / Minus Query: 554 tccaatttctctttctcaatttcaacttttctttcctcggcatgctgagcaacgccatta 613 ||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||| Sbjct: 171 tccaacttctctttctcaatttcaacttttctttcctcggcatgttgagctaagccattc 112 Query: 614 gccagtgcctggtagtgaaaatccagtgtctgcat 648 || |||||||||||| | ||||| || |||||||| Sbjct: 111 gcgagtgcctggtagcggaaatctagagtctgcat 77
>ref|XM_465609.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2534 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 534 atcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcgg 593 |||| |||||||||| ||||||||| |||||||||||||| |||||| |||||||||| | Sbjct: 2030 atcattgtgcatttgctttctccaacttctctttctcaatctcaactcttctttcctcag 1971 Query: 594 catgctgagcaacgccattagccagtgcctg 624 |||| ||||| | |||| |||| || ||||| Sbjct: 1970 catgttgagctatgccactagcaagggcctg 1940
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 534 atcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcgg 593 |||| |||||||||| ||||||||| |||||||||||||| |||||| |||||||||| | Sbjct: 16315256 atcattgtgcatttgctttctccaacttctctttctcaatctcaactcttctttcctcag 16315197 Query: 594 catgctgagcaacgccattagccagtgcctg 624 |||| ||||| | |||| |||| || ||||| Sbjct: 16315196 catgttgagctatgccactagcaagggcctg 16315166
>dbj|AP004870.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419C03 Length = 146929 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 534 atcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcgg 593 |||| |||||||||| ||||||||| |||||||||||||| |||||| |||||||||| | Sbjct: 922 atcattgtgcatttgctttctccaacttctctttctcaatctcaactcttctttcctcag 863 Query: 594 catgctgagcaacgccattagccagtgcctg 624 |||| ||||| | |||| |||| || ||||| Sbjct: 862 catgttgagctatgccactagcaagggcctg 832
>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487H05 Length = 176057 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 534 atcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcgg 593 |||| |||||||||| ||||||||| |||||||||||||| |||||| |||||||||| | Sbjct: 149743 atcattgtgcatttgctttctccaacttctctttctcaatctcaactcttctttcctcag 149684 Query: 594 catgctgagcaacgccattagccagtgcctg 624 |||| ||||| | |||| |||| || ||||| Sbjct: 149683 catgttgagctatgccactagcaagggcctg 149653
>dbj|AK068629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153G19, full insert sequence Length = 2531 Score = 85.7 bits (43), Expect = 2e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 534 atcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcgg 593 |||| |||||||||| ||||||||| |||||||||||||| |||||| |||||||||| | Sbjct: 2027 atcattgtgcatttgctttctccaacttctctttctcaatctcaactcttctttcctcag 1968 Query: 594 catgctgagcaacgccattagccagtgcctg 624 |||| ||||| | |||| |||| || ||||| Sbjct: 1967 catgttgagctatgccactagcaagggcctg 1937
>gb|BT018618.1| Zea mays clone EL01N0501G06.d mRNA sequence Length = 1573 Score = 77.8 bits (39), Expect = 4e-11 Identities = 99/119 (83%) Strand = Plus / Minus Query: 535 tcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcggc 594 |||||||||||||| ||||| |||||||| |||||||||||| |||||||| |||||| Sbjct: 1092 tcactgtgcatttgccttctcagatttctctctctcaatttcaatttttctttgctcggc 1033 Query: 595 atgctgagcaacgccattagccagtgcctggtagtgaaaatccagtgtctgcataaggt 653 ||| || | | |||| |||| || ||||| || | ||||||| |||||||||||||| Sbjct: 1032 atgttgtcctatgccactagcaagcgcctgataacggaaatccaatgtctgcataaggt 974
>gb|AY107582.1| Zea mays PCO101470 mRNA sequence Length = 543 Score = 77.8 bits (39), Expect = 4e-11 Identities = 99/119 (83%) Strand = Plus / Minus Query: 535 tcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcggc 594 |||||||||||||| ||||| |||||||| |||||||||||| |||||||| |||||| Sbjct: 138 tcactgtgcatttgccttctcagatttctctctctcaatttcaatttttctttgctcggc 79 Query: 595 atgctgagcaacgccattagccagtgcctggtagtgaaaatccagtgtctgcataaggt 653 ||| || | | |||| |||| || ||||| || | ||||||| |||||||||||||| Sbjct: 78 atgttgtcctatgccactagcaagcgcctgataacggaaatccaatgtctgcataaggt 20
>gb|AY109170.1| Zea mays PCO119966 mRNA sequence Length = 615 Score = 69.9 bits (35), Expect = 1e-08 Identities = 98/119 (82%) Strand = Plus / Minus Query: 535 tcactgtgcatttgatttctccaatttctctttctcaatttcaacttttctttcctcggc 594 |||||||||||||| ||||| ||||||| |||||||||||| |||||||| |||||| Sbjct: 375 tcactgtgcatttgccttctcagatttctccttctcaatttcattttttctttgctcggc 316 Query: 595 atgctgagcaacgccattagccagtgcctggtagtgaaaatccagtgtctgcataaggt 653 ||| || |||| |||| |||| || || || || |||||||| ||| |||||||||| Sbjct: 315 atgttgtgcaatgccactagcaagcgcttgataagaaaaatccaatgtatgcataaggt 257
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome Length = 1995281 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 557 aatttctctttctcaatttcaac 579 ||||||||||||||||||||||| Sbjct: 929909 aatttctctttctcaatttcaac 929931
>emb|CR855277.16| Zebrafish DNA sequence from clone DKEY-71B5 in linkage group 16, complete sequence Length = 245559 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 528 tcattcatcactgtgcatttgat 550 ||||||||||||||||||||||| Sbjct: 236401 tcattcatcactgtgcatttgat 236423
>emb|AL928629.6| Mouse DNA sequence from clone RP23-117F22 on chromosome X, complete sequence Length = 105692 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 563 tctttctcaatttcaacttttct 585 ||||||||||||||||||||||| Sbjct: 84252 tctttctcaatttcaacttttct 84274
>emb|AL009028.1|HS164L12 Human DNA sequence from clone RP1-164L12 on chromosome Xq13.1-21.2 Contains the 5' end of the ITM2A gene for integral membrane protein 2A, complete sequence Length = 135090 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 559 tttctctttctcaatttcaacttttctttc 588 ||||| ||||||||||||||||||| |||| Sbjct: 32751 tttctttttctcaatttcaacttttatttc 32722
>emb|AL670230.12| Mouse DNA sequence from clone RP23-15D12 on chromosome X, complete sequence Length = 207966 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 agctataagagaacttggggac 213 |||||||||||||||||||||| Sbjct: 110822 agctataagagaacttggggac 110843
>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence Length = 162172 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 tccaatttctctttctcaatt 574 ||||||||||||||||||||| Sbjct: 6765 tccaatttctctttctcaatt 6745
>emb|AL357973.10| Human DNA sequence from clone RP4-675H14 on chromosome 1, complete sequence Length = 106846 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 ctgtgcatttgatttctccaa 558 ||||||||||||||||||||| Sbjct: 40322 ctgtgcatttgatttctccaa 40302
>gb|AC008667.10| Homo sapiens chromosome 5 clone CTB-35F21, complete sequence Length = 189049 Score = 42.1 bits (21), Expect = 2.3 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 527 ctcattcatcactgtgca-tttgatttct 554 |||||||||||||||||| |||||||||| Sbjct: 159682 ctcattcatcactgtgcactttgatttct 159654
>gb|AC013737.5| Homo sapiens chromosome 10 clone RP11-313B15, complete sequence Length = 203259 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 552 tctccaatttctctttctcaa 572 ||||||||||||||||||||| Sbjct: 180725 tctccaatttctctttctcaa 180705
>ref|NM_069657.1| Caenorhabditis elegans F36H1.3 (F36H1.3) mRNA, complete cds Length = 1794 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 563 tctttctcaatttcaactttt 583 ||||||||||||||||||||| Sbjct: 1442 tctttctcaatttcaactttt 1422
>ref|NM_060806.3| Caenorhabditis elegans T26E3.4 (T26E3.4) mRNA, complete cds Length = 894 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 559 tttctctttctcaatttcaactttt 583 |||||||||||||||||| |||||| Sbjct: 416 tttctctttctcaatttcgactttt 392
>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198488 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 caaagggctcatttaacaaat 244 ||||||||||||||||||||| Sbjct: 98002 caaagggctcatttaacaaat 97982
>gb|AF119155.1|HS2NRG05 Homo sapiens alternatively spliced neuregulin 2 (NRG2) gene, exon 5 Length = 326 Score = 42.1 bits (21), Expect = 2.3 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 527 ctcattcatcactgtgca-tttgatttct 554 |||||||||||||||||| |||||||||| Sbjct: 21 ctcattcatcactgtgcactttgatttct 49
>emb|Z68760.2|CEF36H1 Caenorhabditis elegans Cosmid F36H1, complete sequence Length = 38608 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 563 tctttctcaatttcaactttt 583 ||||||||||||||||||||| Sbjct: 28860 tctttctcaatttcaactttt 28840
>emb|Z82053.1|CET26E3 Caenorhabditis elegans Cosmid T26E3, complete sequence Length = 32242 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 559 tttctctttctcaatttcaactttt 583 |||||||||||||||||| |||||| Sbjct: 11062 tttctctttctcaatttcgactttt 11038
>ref|XM_638728.1| Dictyostelium discoideum PI3kinase (DDB0185203), partial mRNA Length = 5094 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 ttctccaatttctctttctc 570 |||||||||||||||||||| Sbjct: 1577 ttctccaatttctctttctc 1558
>gb|AC162883.4| Mus musculus chromosome 1, clone RP24-148E21, complete sequence Length = 154199 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 aatttcaacttttctttcct 590 |||||||||||||||||||| Sbjct: 136871 aatttcaacttttctttcct 136852
>gb|AC163655.3| Mus musculus BAC clone RP23-264P21 from chromosome 6, complete sequence Length = 185583 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 559 tttctctttctcaatttcaacttt 582 |||||||||||||||||| ||||| Sbjct: 91669 tttctctttctcaatttccacttt 91692
>gb|AC102874.7| Mus musculus chromosome 1, clone RP24-500O1, complete sequence Length = 166507 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 aatttcaacttttctttcct 590 |||||||||||||||||||| Sbjct: 5716 aatttcaacttttctttcct 5697
>gb|AC145984.3| Pan troglodytes BAC clone RP43-17F10 from 7, complete sequence Length = 186825 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 acaaacaaaccattgctata 525 |||||||||||||||||||| Sbjct: 175466 acaaacaaaccattgctata 175485
>emb|CR847538.15| Zebrafish DNA sequence from clone DKEY-191C17 in linkage group 8, complete sequence Length = 63430 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 aacaaaccattgctataact 528 |||||||||||||||||||| Sbjct: 24783 aacaaaccattgctataact 24764
>emb|CT009545.5| M.truncatula DNA sequence from clone MTH2-107B14 on chromosome 3, complete sequence Length = 96467 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 actctggcctgcaacaaaac 500 |||||||||||||||||||| Sbjct: 68133 actctggcctgcaacaaaac 68114
>gb|AC123840.4| Mus musculus BAC clone RP23-399K5 from chromosome 13, complete sequence Length = 191185 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 aagacaaacaaaccattgct 522 |||||||||||||||||||| Sbjct: 55086 aagacaaacaaaccattgct 55105
>gb|AC124503.2| Mus musculus BAC clone RP23-417F2 from chromosome 10, complete sequence Length = 206343 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 tttctctttctcaatttcaa 578 |||||||||||||||||||| Sbjct: 131423 tttctctttctcaatttcaa 131442
>ref|XM_736982.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000082.05.0) partial mRNA Length = 2361 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 564 ctttctcaatttcaacttttcttt 587 |||||||| ||||||||||||||| Sbjct: 694 ctttctcattttcaacttttcttt 671
>gb|AC146154.3| Pan troglodytes BAC clone RP43-37E8 from 7, complete sequence Length = 240699 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 acaaacaaaccattgctata 525 |||||||||||||||||||| Sbjct: 100068 acaaacaaaccattgctata 100049
>emb|AL390732.10| Human DNA sequence from clone RP11-439N12 on chromosome 9 Contains a novel gene similar to mouse 9130404H11Rik protein, the CER1 gene for cerberus 1 homolog, cysteine knot superfamily (Xenopus laevis) and the 3' end of a novel gene (FLJ25416), complete sequence Length = 143246 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 catcataacaagtgtgtagt 305 |||||||||||||||||||| Sbjct: 101867 catcataacaagtgtgtagt 101848
>emb|AL133549.11| Human DNA sequence from clone RP11-32F11 on chromosome 9p24.1-24.3 Contains the 3'end of the RFX3 gene for regulatory factor X 3 (influences HLA class II expression), a novel gene and a CpG island, complete sequence Length = 162237 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 tttctctttctcaatttcaa 578 |||||||||||||||||||| Sbjct: 83049 tttctctttctcaatttcaa 83030
>emb|CR450848.13| Zebrafish DNA sequence from clone CH211-149E23 in linkage group 15, complete sequence Length = 191457 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 aactcattcatcactgtgca 544 |||||||||||||||||||| Sbjct: 79030 aactcattcatcactgtgca 79011
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 ttctcaatttcaacttttct 585 |||||||||||||||||||| Sbjct: 495414 ttctcaatttcaacttttct 495433
>gb|AC023449.11| Homo sapiens chromosome 15, clone RP11-345J18, complete sequence Length = 175336 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 gcaacaaaactcaagacaaa 510 |||||||||||||||||||| Sbjct: 101713 gcaacaaaactcaagacaaa 101732
>ref|XM_683650.1| PREDICTED: Danio rerio similar to CG32425-PA, isoform A (LOC560255), mRNA Length = 6279 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 aactcattcatcactgtgca 544 |||||||||||||||||||| Sbjct: 3313 aactcattcatcactgtgca 3332
>gb|AF317810.1|AF317810 Anopheles pseudopunctipennis glucose-6-phosphate dehydrogenase (G6pd) gene, partial cds Length = 501 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 559 tttctctttctcaatttcaacttt 582 ||||||||| |||||||||||||| Sbjct: 161 tttctctttttcaatttcaacttt 184
>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence Length = 148298 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 atggattcactgaatcctgcaacg 108 |||| ||||||||||||||||||| Sbjct: 51228 atggcttcactgaatcctgcaacg 51205
>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence Length = 413138 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ttctccaatttctctttctc 570 |||||||||||||||||||| Sbjct: 135611 ttctccaatttctctttctc 135630
>gb|AC010287.9| Homo sapiens chromosome 16 clone CTA-331F8, complete sequence Length = 198949 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 ttctctttctcaatttcaac 579 |||||||||||||||||||| Sbjct: 192048 ttctctttctcaatttcaac 192029
>gb|AC109512.12| Homo sapiens chromosome 15, clone RP11-931B1, complete sequence Length = 189975 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 gcaacaaaactcaagacaaa 510 |||||||||||||||||||| Sbjct: 178090 gcaacaaaactcaagacaaa 178109
>gb|AC012183.9| Homo sapiens chromosome 16 clone RP11-451N19, complete sequence Length = 220173 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 ttctctttctcaatttcaac 579 |||||||||||||||||||| Sbjct: 144733 ttctctttctcaatttcaac 144752
>gb|AC023469.6| Homo sapiens BAC clone RP11-501P16 from 2, complete sequence Length = 133922 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 caacaaaactcaagacaaacaaac 515 ||||||||||||||||||| |||| Sbjct: 90285 caacaaaactcaagacaaaaaaac 90308
>emb|AL928863.14| Zebrafish DNA sequence from clone CH211-152B13, complete sequence Length = 142564 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 aactcattcatcactgtgca 544 |||||||||||||||||||| Sbjct: 112354 aactcattcatcactgtgca 112373
>emb|BX005163.13| Mouse DNA sequence from clone RP23-408E16 on chromosome X, complete sequence Length = 188605 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 atttgatttctccaatttct 563 |||||||||||||||||||| Sbjct: 180784 atttgatttctccaatttct 180803
>gb|AC141427.5| Mus musculus BAC clone RP23-100O21 from chromosome 6, complete sequence Length = 187833 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 559 tttctctttctcaatttcaacttt 582 |||||||||||||||||| ||||| Sbjct: 185369 tttctctttctcaatttccacttt 185346
>emb|AL732472.16| Mouse DNA sequence from clone RP23-41P22 on chromosome 2, complete sequence Length = 129369 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 gcctcaggcctccaaaaacaagta 432 |||||||||||||||| ||||||| Sbjct: 3472 gcctcaggcctccaaatacaagta 3495
>gb|AC156016.2| Mus musculus BAC clone RP24-320A12 from chromosome 14, complete sequence Length = 154465 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 gcaccacccataaacaaata 341 |||||||||||||||||||| Sbjct: 96052 gcaccacccataaacaaata 96033
>gb|U23478.1|DDU23478 Dictyostelium discoideum phosphatidylinositol-4,5-diphosphate 3-kinase (PIK3) mRNA, partial cds Length = 4758 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 ttctccaatttctctttctc 570 |||||||||||||||||||| Sbjct: 1241 ttctccaatttctctttctc 1222
>emb|AL772282.9| Mouse DNA sequence from clone RP23-328F3 on chromosome 2, complete sequence Length = 188624 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 493 aacaaaactcaagacaaacaaacc 516 |||||||||||||| ||||||||| Sbjct: 183231 aacaaaactcaagaaaaacaaacc 183208
>emb|AL844160.4| Mouse DNA sequence from clone RP23-340N6 on chromosome 4, complete sequence Length = 207022 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 565 tttctcaatttcaacttttctttc 588 |||||||||||||| ||||||||| Sbjct: 83605 tttctcaatttcaatttttctttc 83582 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,417,175 Number of Sequences: 3902068 Number of extensions: 6417175 Number of successful extensions: 156876 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 156652 Number of HSP's gapped (non-prelim): 224 length of query: 653 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 630 effective length of database: 17,143,297,704 effective search space: 10800277553520 effective search space used: 10800277553520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
