ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31e03 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/110 (29%), Positives = 54/110 (49%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 EV I E+L + S +N LR + DL L +W+ + +G+ N LT Sbjct: 1050 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1109 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIP 313 L + + L+++PV+YE+++ +ID + A +K A K +KIP Sbjct: 1110 LLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMA----KIQAKIP 1155
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/110 (30%), Positives = 54/110 (49%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 EV I E+L + S +N LR + DL L +W+ + +G+ N LT Sbjct: 1080 EVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1139 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIP 313 L + + L++VPV+YE+++ +ID + A +K A K +KIP Sbjct: 1140 LLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMA----KIQAKIP 1185
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/110 (29%), Positives = 54/110 (49%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 EV I E+L + S +N LR + DL L +W+ + +G+ N LT Sbjct: 1051 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLT 1110 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIP 313 L + + L+++PV+YE+++ +ID + A +K A K +KIP Sbjct: 1111 LLILALISLFSIPVIYERHQVQIDHYLGLANKSVKDAMA----KIQAKIP 1156
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 46.2 bits (108), Expect = 9e-05 Identities = 29/119 (24%), Positives = 60/119 (50%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 ++ + + N + INR + + DL L + +W+++ +G+ N +T Sbjct: 123 DITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGIT 182 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIPKGPSKDKKQ 286 L + +++++VP++YEKY+ +ID + A + K EK +K+P G +K K + Sbjct: 183 LLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKIQAKLP-GIAKKKAE 236
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/119 (22%), Positives = 60/119 (50%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 ++ + + N + +N+ + + DL L + +W+++ +G+ N +T Sbjct: 124 DITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGIT 183 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIPKGPSKDKKQ 286 L + +++++VP++YEKY+ +ID + A + K EK +K+P G +K K + Sbjct: 184 LLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKIQAKLP-GIAKKKAE 237
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/86 (25%), Positives = 46/86 (53%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 E+ + ++ L++ +N LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAF 385 L + + ++T+PV+Y K++ +ID + Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/86 (25%), Positives = 46/86 (53%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 E+ + ++ L++ +N LR + +DL L +W+L+ +G+ N LT Sbjct: 664 EITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 723 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAF 385 L + + ++T+PV+Y K++ +ID + Sbjct: 724 LLLMAVVSMFTLPVVYVKHQAQIDQY 749
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/86 (24%), Positives = 45/86 (52%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 E+ + ++ L+ +N LR + +DL L +W+L+ +G+ N LT Sbjct: 665 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 724 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAF 385 L + + ++T+PV+Y K++ ++D + Sbjct: 725 LLLMAVVSMFTLPVVYVKHQAQVDQY 750
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/86 (24%), Positives = 45/86 (52%) Frame = -1 Query: 642 EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNFLT 463 E+ + ++ L+ +N LR + +DL L +W+L+ +G+ N LT Sbjct: 668 EITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLT 727 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAF 385 L + + ++T+PV+Y K++ ++D + Sbjct: 728 LLLMAVVSMFTLPVVYVKHQAQVDQY 753
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 35.0 bits (79), Expect = 0.21 Identities = 18/52 (34%), Positives = 32/52 (61%) Frame = -1 Query: 540 DLKKFLIVVAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 385 DL L + +IL+ +G+ N LTL + + L+TVP+LY +++ +ID + Sbjct: 381 DLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQY 432
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 34.7 bits (78), Expect = 0.27 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +3 Query: 399 CPHTSRTGQARCRVP*RLCRTR*GNCRSCQEQRGSTGLQPQSGISSGRGLGQWP 560 CP ++G +R R +LC N + C+++ G+ G +P G+SS G WP Sbjct: 522 CPKKRKSGNSRERC--QLCNGMGHNAKQCRKRDGNQGQRPGKGLSS----GPWP 569
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 33.9 bits (76), Expect = 0.46 Identities = 17/52 (32%), Positives = 32/52 (61%) Frame = -1 Query: 540 DLKKFLIVVAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 385 DL L + +IL+ +G+ N LTL + + L+T+P+LY +++ +ID + Sbjct: 454 DLVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQY 505
>RPOB_BRUSU (Q8G069) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 32.7 bits (73), Expect = 1.0 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = +1 Query: 400 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 576 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 PVDLIAQRAGNIDRQVLRDLHLWECWE 657 P ++ I R+++ + + W+ Sbjct: 997 PKGF--KKGTTITRELMTEYPRSQWWQ 1021
>RPOB_BRUME (Q8YHP8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 32.7 bits (73), Expect = 1.0 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = +1 Query: 400 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 576 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 PVDLIAQRAGNIDRQVLRDLHLWECWE 657 P ++ I R+++ + + W+ Sbjct: 997 PKGF--KKGTTITRELMTEYPRSQWWQ 1021
>RPOB_BRUAB (Q57CP8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 32.7 bits (73), Expect = 1.0 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = +1 Query: 400 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 576 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 PVDLIAQRAGNIDRQVLRDLHLWECWE 657 P ++ I R+++ + + W+ Sbjct: 997 PKGF--KKGTTITRELMTEYPRSQWWQ 1021
>RPOB_BRUA2 (Q2YM15) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 32.7 bits (73), Expect = 1.0 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = +1 Query: 400 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 576 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 PVDLIAQRAGNIDRQVLRDLHLWECWE 657 P ++ I R+++ + + W+ Sbjct: 997 PKGF--KKGTTITRELMTEYPRSQWWQ 1021
>TSN4_MOUSE (Q9DCK3) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) Length = 238 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 12/69 (17%) Frame = -1 Query: 525 LIVVAGLWILSALGSSC------------NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFG 382 L++V G ++++ C F L +VF++ T+ VL+ Y DKID++ Sbjct: 56 LLIVTGTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYA 115 Query: 381 EKAMVELKK 355 ++ +LKK Sbjct: 116 QQ---DLKK 121
>ATM_CANGA (Q6FRZ9) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2763 Score = 31.6 bits (70), Expect = 2.3 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%) Frame = -1 Query: 462 LFYIVFMVLYTVPV----------LYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKI 316 L+YI+ +LY +P LYEKY DK+D EK ++K IFD+ S+I Sbjct: 2269 LWYIMKRLLYKLPFETGYAVINLQLYEKYSDKLD---EKISEKIKAANLIFDQLQNSQI 2324
>RPOB_BRAJA (Q89J74) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1372 Score = 31.6 bits (70), Expect = 2.3 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +1 Query: 415 VQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLI 591 V +RHGV+ E + + EEI AK R+D QA + ++A L G Q P Sbjct: 941 VFNRHGVDKDERALAIEREEIERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGF- 999 Query: 592 AQRAGNIDRQVLRDLHLWECW 654 ++ I R VL + + W Sbjct: 1000 -KKDTKITRAVLEEYPKSQWW 1019
>RPOB_RHOPA (Q6N4R9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1374 Score = 31.2 bits (69), Expect = 3.0 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +1 Query: 415 VQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLI 591 V +RHGV+ E + + EEI AK R+D QA + ++A L +G Q P Sbjct: 943 VFNRHGVDKDERALAIEREEIERLAKDRDDEQAILDRNVYGRLADLLDGRQGIAGPKGF- 1001 Query: 592 AQRAGNIDRQVLRDLHLWECW 654 ++ I R VL + + W Sbjct: 1002 -KKDTKITRAVLEEYPKSQWW 1021
>RPOB_RHOS4 (Q3J5T0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1377 Score = 30.8 bits (68), Expect = 3.9 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Frame = +1 Query: 415 VQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLI 591 V +RHGV+ E ++ + EE+ A+ R+D A + ++ L G A K P + Sbjct: 952 VFNRHGVDKDERALQIEREEVERLARDRDDELAILERNIYSRLRTLIMGKTAVKGPKGI- 1010 Query: 592 AQRAGN-IDRQVLRDLHLWECWE 657 RAG+ I+ +L L + W+ Sbjct: 1011 --RAGSEINEDLLSTLSRGQWWQ 1031
>TSN4_HUMAN (O14817) Tetraspanin-4 (Tspan-4) (Transmembrane 4 superfamily| member 7) (Novel antigen 2) (NAG-2) Length = 238 Score = 30.4 bits (67), Expect = 5.1 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 12/69 (17%) Frame = -1 Query: 525 LIVVAGLWILS-----ALGS----SCNFLTLFYI---VFMVLYTVPVLYEKYEDKIDAFG 382 L+++ G ++++ LG+ C LT F + VF++ T+ +L+ Y DKID + Sbjct: 56 LLIITGAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYA 115 Query: 381 EKAMVELKK 355 ++ +LKK Sbjct: 116 QQ---DLKK 121
>Y1241_AQUAE (O67286) Hypothetical protein aq_1241| Length = 150 Score = 30.4 bits (67), Expect = 5.1 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = -1 Query: 462 LFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYA----IFDEKCLSKIPKG 307 +F ++ +++Y+ L +KY+ G+K + + KK Y I D+K KIPKG Sbjct: 4 IFLLLSLLIYSCQELPKKYQTPE---GKKILEKYKKQYVKGVVILDDKLKEKIPKG 56
>SHCBP_MOUSE (Q9Z179) SHC SH2 domain-binding protein 1 (Protein expressed in| activated lymphocytes) (mPAL) (SHC-binding protein) Length = 668 Score = 30.4 bits (67), Expect = 5.1 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 4/118 (3%) Frame = -1 Query: 648 FPEVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLWILSALGSSCNF 469 FP +K V +A YE +L + + DLK+F + + LW++S S F Sbjct: 135 FPSLKA----VVRLAEPCIYESKLSTFTLANVKELLDLKEFHLPLQELWVVS--DDSHEF 188 Query: 468 ----LTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKIPKG 307 L + ++ F + E+ ED+ D F L+ YY I ++ ++P G Sbjct: 189 HQMALAIEHVRFFYKHIWRSWDEEEEDEYDYFVRCVEPRLRLYYDILED----RVPSG 242
>ARAB_MYCSM (Q9LBQ3) Ribulokinase (EC 2.7.1.16)| Length = 563 Score = 30.0 bits (66), Expect = 6.6 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Frame = -1 Query: 666 TSALPTFPEVKIPEDLAVNVARS----LRYEI-----NRGFASLRAIGQGRDLKKFLIVV 514 T ALP PEV++P D A+ V LR+ I N G +G G D +V Sbjct: 46 TEALPGHPEVRLPADYALQVPADYIDVLRFAIPEAVANAGIDPADVVGLGTDFTACTMVA 105 Query: 513 A 511 A Sbjct: 106 A 106
>PROA_DEIRA (Q9RTD9) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 432 Score = 30.0 bits (66), Expect = 6.6 Identities = 21/68 (30%), Positives = 30/68 (44%) Frame = +1 Query: 430 GVEYHEDYVEQGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLIAQRAGN 609 GVE D E +AGA + Q ++ EFL + A +D IA+R G+ Sbjct: 297 GVEVRAD-AEAQAALAGAGLNVTSAQLGDYGTEFLALVASLRTVSGLDEALDFIAERGGH 355 Query: 610 IDRQVLRD 633 D + RD Sbjct: 356 TDVILTRD 363
>GLND_BRUSU (Q8G312) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = +1 Query: 391 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 564 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>GLND_BRUME (Q8YES3) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = +1 Query: 391 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 564 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>GLND_BRUAB (Q57FN0) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = +1 Query: 391 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 564 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>GLND_BRUA2 (Q2YNZ1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 934 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = +1 Query: 391 INLVLILLVQDRHGVEYHEDYVEQGEEIAGA--AKSREDPQACNHNQEFLQVAALANGPQ 564 +N++ + + DRHG+E+H + ++ A RE+P+A N+ FL++ P+ Sbjct: 404 VNMIRLFHLADRHGLEFHPEAMQSLTRSLKLINADLRENPEA---NRLFLEILTSPRNPE 460
>RPOB_ZYMMO (Q5NPK5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1401 Score = 29.6 bits (65), Expect = 8.7 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = +1 Query: 415 VQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLI 591 V +RHGV+ E + + EEI K RED +A + + Q+ G + AP I Sbjct: 955 VFNRHGVDKDERAMAIEREEIERLTKDREDERAILNRATYAQLQEKLLGQTVAAAPYKHI 1014 Query: 592 AQRAGNIDRQVLRDL--HLW 645 + A ID + L + H W Sbjct: 1015 VKGA-RIDIETLASVEPHKW 1033
>RPOB_RHILO (Q98N66) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 29.6 bits (65), Expect = 8.7 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +1 Query: 400 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 576 V+ + V +RHGVE E + + EEI AK R+D QA + +++ + G +A Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYARLSDVLVGKEAIAG 996 Query: 577 P 579 P Sbjct: 997 P 997 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,605,371 Number of Sequences: 219361 Number of extensions: 1924131 Number of successful extensions: 5850 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5846 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
