ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31e02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191653.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 438 Score = 452 bits (228), Expect = e-124 Identities = 367/414 (88%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 429 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 370 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 311 ||| |||||||| || |||||||| | |||||||| |||||||||||| ||||||||||| Sbjct: 369 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctggtt 310 Query: 312 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 371 |||||||||||||||||| ||||||||||||||||||||||||| ||||||| || | Sbjct: 309 cttgacagccttggccattttgcggaactccttgcgcatgacagacttgtggtagaggct 250 Query: 372 cgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttctc 431 ||||||||||||||||||| || ||||||||| ||||||||||| | | | ||||| | Sbjct: 249 agcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtttccttacc 190 Query: 432 agcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 491 | |||||||| |||||||| || |||||||||||||||||||| | |||||| ||||| Sbjct: 189 actggcaggctggaccgtcacggttttcttgtttgccaggccagaatgcttgtaagagtg 130 Query: 492 gacattgtagaggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaa 551 ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 129 gacattgtacaggttgttgggctccttgctgaactgaaccttggcattgccattgccgaa 70 Query: 552 ctgcttgatcaggaagnngttgttcttcctgaccagctcccagaccagagaatc 605 |||||||| |||||| ||||||||| |||| |||||||||||||||||||| Sbjct: 69 ctgcttgaccaggaatgaattgttcttcttgacaagctcccagaccagagaatc 16
>gb|BT017752.1| Zea mays clone EL01N0450E02.c mRNA sequence Length = 729 Score = 341 bits (172), Expect = 2e-90 Identities = 335/390 (85%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 473 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 414 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 311 ||| || |||| || | |||||||| ||||||||||| |||||||| | |||||||| Sbjct: 413 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtt 354 Query: 312 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 371 || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct: 353 tttcacagccttggccatcttgcggaactccttgcgcatcacagacttgtggctgagctt 294 Query: 372 cgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttctc 431 ||| || ||||||||||||| | |||||| || ||||||||||||| | ||||| | Sbjct: 293 cgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttcc 234 Query: 432 agcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 491 |||||| ||||| | ||| ||||| ||||||||||| | ||||||||||||||||||||| Sbjct: 233 agcagctggctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtg 174 Query: 492 gacattgtagaggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaa 551 | ||||||||||||||||||||||||| ||||||| |||||||| |||| |||||| || Sbjct: 173 taaattgtagaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaa 114 Query: 552 ctgcttgatcaggaagnngttgttcttcct 581 |||||| | ||||||| |||||||||||| Sbjct: 113 ctgcttcaccaggaaggagttgttcttcct 84
>gb|AY103648.1| Zea mays PCO068622 mRNA sequence Length = 954 Score = 323 bits (163), Expect = 4e-85 Identities = 334/391 (85%), Gaps = 3/391 (0%) Strand = Plus / Minus Query: 191 actgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgc 250 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 656 actgcctgttcttcttcttgacaccggacttggcaacctggaggctgcggtacaccgagc 597 Query: 251 tcagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggt 310 | || || |||||||| |||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 596 ttagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtcactaacctggt 537 Query: 311 tcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaagg 370 | || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct: 536 ttttcacagccttggccatcttgcggaactccttgcgcatcacagacttgtggctgagct 477 Query: 371 ccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttct 430 |||||| |||||||||||| | |||||| || ||||||||||||| | ||||| Sbjct: 476 tcgcaggtgcgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctt-- 419 Query: 431 cagcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagt 490 ||||| ||||| | |||||||||||||||||| |||| || |||| ||| |||||| Sbjct: 418 -tgcagctggctggatcgtcacagtcttcttgttcgccaaacccgagtgtttgaaggagt 360 Query: 491 ggacattgtagaggttgttgggctccttgctgaactgaaccttggcgttgctgttgccga 550 ||| |||||||||||||| ||||||||| ||||||| |||||||| |||| |||||||| Sbjct: 359 ggatgttgtagaggttgttcggctccttggtgaactgcaccttggcattgccgttgccga 300 Query: 551 actgcttgatcaggaagnngttgttcttcct 581 ||||||| | |||||| |||||||||||| Sbjct: 299 actgcttcacaaggaaggagttgttcttcct 269
>gb|BT017240.1| Zea mays clone EL01N0305E06.c mRNA sequence Length = 663 Score = 317 bits (160), Expect = 2e-83 Identities = 332/390 (85%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 417 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 358 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 311 ||| || |||| || | |||||||| ||||||||||| |||||||| | |||||||| Sbjct: 357 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtt 298 Query: 312 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 371 || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct: 297 tttcacagccttggccatcttgcggaactccttgcgcatcacagacttgtggctgagctt 238 Query: 372 cgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatctccttctc 431 ||| || ||||||||||||| | |||||| || ||||||||||||| | ||||| | Sbjct: 237 cgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttcc 178 Query: 432 agcagcaggctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtg 491 |||||| ||||| | ||| ||||| ||||||||||| | ||||||||||||||||||||| Sbjct: 177 agcagctggctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtg 118 Query: 492 gacattgtagaggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaa 551 | ||||||||||||||||||||||||| ||||||| |||||||| |||| |||||| || Sbjct: 117 taaattgtagaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaa 58 Query: 552 ctgcttgatcaggaagnngttgttcttcct 581 ||| | ||||||| |||||||||||| Sbjct: 57 ctgggacaccaggaaggagttgttcttcct 28
>gb|AF457940.1| Zea mays clone cho1c.pk002.j11, mRNA sequence Length = 505 Score = 301 bits (152), Expect = 1e-78 Identities = 324/381 (85%), Gaps = 1/381 (0%) Strand = Plus / Minus Query: 202 ttcttcttgacaccagacttggcaacct-ggaggctgcggtaaactgcgctcagtcttgc 260 |||||||||||||||||||||||||||| ||||||||||||| || | |||||| | | Sbjct: 460 ttcttcttgacaccagacttggcaaccttggaggctgcggtacacagagctcagcntacc 401 Query: 261 aagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggttcttgacagc 320 ||| || | |||||||| ||||||||||| |||||||| | |||||||| || ||||| Sbjct: 400 aagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtttttcacagc 341 Query: 321 cttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggccgcaggctt 380 |||||||||||||||||||||||||||||| |||| ||||||| ||| ||| || | Sbjct: 340 cttggccatcttgcggaactccttgcgcatcacagacttgtggctgagcttcgcgggtgt 281 Query: 381 gttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcagg 440 |||||||||||| | |||||| || ||||||||||||| | ||||| ||||||| || Sbjct: 280 gttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttccagcagctgg 221 Query: 441 ctgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgta 500 ||| | ||| ||||| ||||||||||| | ||||||||||||||||||||| | |||||| Sbjct: 220 ctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtgtaaattgta 161 Query: 501 gaggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaactgcttgat 560 ||||||||||||||||||| ||||||| |||||||| |||| |||||| |||||||| | Sbjct: 160 gaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaactgcttcac 101 Query: 561 caggaagnngttgttcttcct 581 ||||||| |||||||||||| Sbjct: 100 caggaaggagttgttcttcct 80
>ref|XM_475816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 444 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 429 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 370 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 311 || || |||||||| |||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 369 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctggtt 310 Query: 312 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 309 cttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 258 Score = 178 bits (90), Expect = 1e-41 Identities = 199/236 (84%) Strand = Plus / Minus Query: 382 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 441 ||||||||||| | ||||||||||||||||||||| | | |||||| | | | ||| Sbjct: 239 ttctgcttcttggtcttggttgtggagaggaccacggccgcgtccttcacgcctgatggc 180 Query: 442 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtag 501 || | |||||| ||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 179 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtggacattgtac 120 Query: 502 aggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaactgcttgatc 561 |||||||||||||||||| ||||||| |||||||| ||||| || ||||||||||| | | Sbjct: 119 aggttgttgggctccttggtgaactgcaccttggcattgctattcccgaactgcttcacc 60 Query: 562 aggaagnngttgttcttcctgaccagctcccagaccagagaatccgaaaccgtcgc 617 |||||| |||||||||| |||| | |||||||| || || |||| ||||||||| Sbjct: 59 aggaagcagttgttcttcttgacaatctcccagatcaaaggctccggaaccgtcgc 4
>ref|XM_468444.1| Oryza sativa (japonica cultivar-group), mRNA Length = 444 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 429 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 370 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 311 || ||||||||||| || ||||||| || |||||||||||||||||||| |||||||| Sbjct: 369 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctggtt 310 Query: 312 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 309 cttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 258 Score = 155 bits (78), Expect = 2e-34 Identities = 196/236 (83%) Strand = Plus / Minus Query: 382 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 441 ||||||||||| | |||||| |||||||||||||||| | ||||| || | | ||| Sbjct: 239 ttctgcttcttggtcttggtcgtggagaggaccacagccgcgtcctttccacctgatggc 180 Query: 442 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtag 501 || | |||||| ||||||||||| |||| |||||||| |||||||||||| |||||||| Sbjct: 179 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtgaacattgtac 120 Query: 502 aggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaactgcttgatc 561 |||||||||||||||||| ||||||| |||||||| |||||||| || |||||||| | Sbjct: 119 aggttgttgggctccttggtgaactgcaccttggcattgctgtttccaaactgcttcacg 60 Query: 562 aggaagnngttgttcttcctgaccagctcccagaccagagaatccgaaaccgtcgc 617 |||||| |||||||||| | || | |||||||| || || |||| ||||||||| Sbjct: 59 aggaagcagttgttcttcttcacaatctcccagaacaaaggctccggaaccgtcgc 4
>dbj|AK119884.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-G12, full insert sequence Length = 2472 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 2239 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 2180 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 311 || || |||||||| |||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 2179 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctggtt 2120 Query: 312 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 2119 cttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 2068 Score = 178 bits (90), Expect = 1e-41 Identities = 199/236 (84%) Strand = Plus / Minus Query: 382 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 441 ||||||||||| | ||||||||||||||||||||| | | |||||| | | | ||| Sbjct: 2049 ttctgcttcttggtcttggttgtggagaggaccacggccgcgtccttcacgcctgatggc 1990 Query: 442 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtag 501 || | |||||| ||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 1989 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtggacattgtac 1930 Query: 502 aggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaactgcttgatc 561 |||||||||||||||||| ||||||| |||||||| ||||| || ||||||||||| | | Sbjct: 1929 aggttgttgggctccttggtgaactgcaccttggcattgctattcccgaactgcttcacc 1870 Query: 562 aggaagnngttgttcttcctgaccagctcccagaccagagaatccgaaaccgtcgc 617 |||||| |||||||||| |||| | |||||||| || || |||| ||||||||| Sbjct: 1869 aggaagcagttgttcttcttgacaatctcccagatcaaaggctccggaaccgtcgc 1814
>dbj|AK062099.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-A03, full insert sequence Length = 669 Score = 230 bits (116), Expect = 4e-57 Identities = 158/172 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 266 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 207 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggtt 311 || ||||||||||| || ||||||| || |||||||||||||||||||| |||||||| Sbjct: 206 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctggtt 147 Query: 312 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 146 cttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 95 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 382 ttctgcttctttgacttggttgtggagaggaccacag 418 ||||||||||| | |||||| |||||||||||||||| Sbjct: 76 ttctgcttcttggtcttggtcgtggagaggaccacag 40
>dbj|AK066599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069H24, full insert sequence Length = 2403 Score = 178 bits (90), Expect = 1e-41 Identities = 199/236 (84%) Strand = Plus / Minus Query: 382 ttctgcttctttgacttggttgtggagaggaccacagtcatctccttctcagcagcaggc 441 ||||||||||| | ||||||||||||||||||||| | | |||||| | | | ||| Sbjct: 315 ttctgcttcttggtcttggttgtggagaggaccacggccgcgtccttcacgcctgatggc 256 Query: 442 tgcaccgtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtag 501 || | |||||| ||||||||||| |||| |||||||| ||||||||||||||||||||| Sbjct: 255 tggatcgtcacggtcttcttgttcgccaagccagagtgcttgtaggagtggacattgtac 196 Query: 502 aggttgttgggctccttgctgaactgaaccttggcgttgctgttgccgaactgcttgatc 561 |||||||||||||||||| ||||||| |||||||| ||||| || ||||||||||| | | Sbjct: 195 aggttgttgggctccttggtgaactgcaccttggcattgctattcccgaactgcttcacc 136 Query: 562 aggaagnngttgttcttcctgaccagctcccagaccagagaatccgaaaccgtcgc 617 |||||| |||||||||| |||| | |||||||| || || |||| ||||||||| Sbjct: 135 aggaagcagttgttcttcttgacaatctcccagatcaaaggctccggaaccgtcgc 80 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 2143 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 2084 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 || || |||||||| |||||||||| |||||||||||||||||||||||| ||||| Sbjct: 2083 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctg 2027 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Minus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 393 acctggttcttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 334
>gb|BT016863.1| Zea mays clone Contig696 mRNA sequence Length = 1007 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 191 actgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgc 250 ||||||||||||||||||||||||| |||||||||||||||||||||||||| || | || Sbjct: 192 actgcctgttcttcttcttgacaccggacttggcaacctggaggctgcggtacaccgagc 251 Query: 251 tcagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctggt 310 | || || |||||||| |||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 252 ttagcctagcaagagctggcttggtcagatcaggcctgtagtagttgtcactaacctggt 311 Query: 311 tcttgacagccttgg 325 | || |||||||||| Sbjct: 312 ttttcacagccttgg 326
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 1e-35 Identities = 114/126 (90%) Strand = Plus / Minus Query: 480 cttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaaccttggcgtt 539 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 29308775 cttgtaagagtggacattgtacaggttgttgggctccttgctgaactgaaccttggcatt 29308716 Query: 540 gctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcccagaccag 599 || |||||||||||||||| |||||| ||||||||| |||| |||||||||||||| Sbjct: 29308715 gccattgccgaactgcttgaccaggaatgaattgttcttcttgacaagctcccagaccag 29308656 Query: 600 agaatc 605 |||||| Sbjct: 29308655 agaatc 29308650 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 29309050 acctggttcttgacagccttggccattttgcggaactccttgcgcatgacagacttgtgg 29308991 Query: 364 gtgaaggccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatc 423 || | ||||||||||||||||||| || ||||||||| ||||||||||| | | | Sbjct: 29308990 tagaggctagcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtt 29308931 Query: 424 tccttctcagcagcaggctgcaccgtcacagtcttcttgtttgccaggcc 473 ||||| || |||||||| |||||||| || ||||||||||||||||| Sbjct: 29308930 tccttaccactggcaggctggaccgtcacggttttcttgtttgccaggcc 29308881 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 29309860 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 29309801 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 ||| |||||||| || |||||||| | |||||||| |||||||||||| |||||||| Sbjct: 29309800 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctg 29309744
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 159 bits (80), Expect = 1e-35 Identities = 114/126 (90%) Strand = Plus / Minus Query: 480 cttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaaccttggcgtt 539 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 87638 cttgtaagagtggacattgtacaggttgttgggctccttgctgaactgaaccttggcatt 87579 Query: 540 gctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcccagaccag 599 || |||||||||||||||| |||||| ||||||||| |||| |||||||||||||| Sbjct: 87578 gccattgccgaactgcttgaccaggaatgaattgttcttcttgacaagctcccagaccag 87519 Query: 600 agaatc 605 |||||| Sbjct: 87518 agaatc 87513 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 87913 acctggttcttgacagccttggccattttgcggaactccttgcgcatgacagacttgtgg 87854 Query: 364 gtgaaggccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatc 423 || | ||||||||||||||||||| || ||||||||| ||||||||||| | | | Sbjct: 87853 tagaggctagcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtt 87794 Query: 424 tccttctcagcagcaggctgcaccgtcacagtcttcttgtttgccaggcc 473 ||||| || |||||||| |||||||| || ||||||||||||||||| Sbjct: 87793 tccttaccactggcaggctggaccgtcacggttttcttgtttgccaggcc 87744 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 88723 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 88664 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 ||| |||||||| || |||||||| | |||||||| |||||||||||| |||||||| Sbjct: 88663 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctg 88607
>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F09 Length = 138277 Score = 159 bits (80), Expect = 1e-35 Identities = 114/126 (90%) Strand = Plus / Minus Query: 480 cttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaaccttggcgtt 539 |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 3837 cttgtaagagtggacattgtacaggttgttgggctccttgctgaactgaaccttggcatt 3778 Query: 540 gctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcccagaccag 599 || |||||||||||||||| |||||| ||||||||| |||| |||||||||||||| Sbjct: 3777 gccattgccgaactgcttgaccaggaatgaattgttcttcttgacaagctcccagaccag 3718 Query: 600 agaatc 605 |||||| Sbjct: 3717 agaatc 3712 Score = 155 bits (78), Expect = 2e-34 Identities = 147/170 (86%) Strand = Plus / Minus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 4112 acctggttcttgacagccttggccattttgcggaactccttgcgcatgacagacttgtgg 4053 Query: 364 gtgaaggccgcaggcttgttctgcttctttgacttggttgtggagaggaccacagtcatc 423 || | ||||||||||||||||||| || ||||||||| ||||||||||| | | | Sbjct: 4052 tagaggctagcaggcttgttctgcttctctgtcttggttgtagagaggaccactgccgtt 3993 Query: 424 tccttctcagcagcaggctgcaccgtcacagtcttcttgtttgccaggcc 473 ||||| || |||||||| |||||||| || ||||||||||||||||| Sbjct: 3992 tccttaccactggcaggctggaccgtcacggttttcttgtttgccaggcc 3943 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 4922 ctgcctgttcttctttttgacaccagatttggcaacctggaggctgcggtagactgcgct 4863 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 ||| |||||||| || |||||||| | |||||||| |||||||||||| |||||||| Sbjct: 4862 cagccttgcaagtgctggcttggtaaggtcaggccggtagtagttgtcgctgacctg 4806
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Plus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 76479 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 76538 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 || || |||||||| |||||||||| |||||||||||||||||||||||| ||||| Sbjct: 76539 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctg 76595 Score = 143 bits (72), Expect = 8e-31 Identities = 127/146 (86%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| ||| Sbjct: 78499 ccagagtgcttgtaggagtggacattgtacaggttgttgggctccttggtgaactgcacc 78558 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcc 591 ||||| ||||| || ||||||||||| | ||||||| |||||||||| |||| | |||| Sbjct: 78559 ttggcattgctattcccgaactgcttcaccaggaagcagttgttcttcttgacaatctcc 78618 Query: 592 cagaccagagaatccgaaaccgtcgc 617 |||| || || |||| ||||||||| Sbjct: 78619 cagatcaaaggctccggaaccgtcgc 78644 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 78228 acctggttcttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 78287 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 382 ttctgcttctttgacttggttgtggagaggaccac 416 ||||||||||| | ||||||||||||||||||||| Sbjct: 78306 ttctgcttcttggtcttggttgtggagaggaccac 78340
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 153 bits (77), Expect = 8e-34 Identities = 107/117 (91%) Strand = Plus / Plus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| Sbjct: 26695482 ctgcctgttcttcttcttggcaccagacttggaaacctggaggctgcggtacactgagct 26695541 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 || || |||||||| |||||||||| |||||||||||||||||||||||| ||||| Sbjct: 26695542 aagcctcgcaagagccggcttggtcaggtcaggcctgtagtagttgtcactcacctg 26695598 Score = 143 bits (72), Expect = 8e-31 Identities = 127/146 (86%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| ||| Sbjct: 26697502 ccagagtgcttgtaggagtggacattgtacaggttgttgggctccttggtgaactgcacc 26697561 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcc 591 ||||| ||||| || ||||||||||| | ||||||| |||||||||| |||| | |||| Sbjct: 26697562 ttggcattgctattcccgaactgcttcaccaggaagcagttgttcttcttgacaatctcc 26697621 Query: 592 cagaccagagaatccgaaaccgtcgc 617 |||| || || |||| ||||||||| Sbjct: 26697622 cagatcaaaggctccggaaccgtcgc 26697647 Score = 87.7 bits (44), Expect = 4e-14 Identities = 56/60 (93%) Strand = Plus / Plus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||| Sbjct: 26697231 acctggttcttgacagccttagccattttgcggaactccttgcgcatcacagacttgtgg 26697290 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 382 ttctgcttctttgacttggttgtggagaggaccac 416 ||||||||||| | ||||||||||||||||||||| Sbjct: 26697309 ttctgcttcttggtcttggttgtggagaggaccac 26697343
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 35275065 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 35275124 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 || ||||||||||| || ||||||| || |||||||||||||||||||| ||||| Sbjct: 35275125 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctg 35275181 Score = 119 bits (60), Expect = 1e-23 Identities = 124/146 (84%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| ||| Sbjct: 35275968 ccagagtgcttgtaggagtgaacattgtacaggttgttgggctccttggtgaactgcacc 35276027 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcc 591 ||||| |||||||| || |||||||| | |||||| |||||||||| | || | |||| Sbjct: 35276028 ttggcattgctgtttccaaactgcttcacgaggaagcagttgttcttcttcacaatctcc 35276087 Query: 592 cagaccagagaatccgaaaccgtcgc 617 |||| || || |||| ||||||||| Sbjct: 35276088 cagaacaaaggctccggaaccgtcgc 35276113 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 35275699 acctggttcttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 35275758 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 382 ttctgcttctttgacttggttgtggagaggaccacag 418 ||||||||||| | |||||| |||||||||||||||| Sbjct: 35275777 ttctgcttcttggtcttggtcgtggagaggaccacag 35275813
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 25399 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 25458 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 || ||||||||||| || ||||||| || |||||||||||||||||||| ||||| Sbjct: 25459 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctg 25515 Score = 119 bits (60), Expect = 1e-23 Identities = 124/146 (84%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| ||| Sbjct: 26302 ccagagtgcttgtaggagtgaacattgtacaggttgttgggctccttggtgaactgcacc 26361 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcc 591 ||||| |||||||| || |||||||| | |||||| |||||||||| | || | |||| Sbjct: 26362 ttggcattgctgtttccaaactgcttcacgaggaagcagttgttcttcttcacaatctcc 26421 Query: 592 cagaccagagaatccgaaaccgtcgc 617 |||| || || |||| ||||||||| Sbjct: 26422 cagaacaaaggctccggaaccgtcgc 26447 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 26033 acctggttcttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 26092 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 382 ttctgcttctttgacttggttgtggagaggaccacag 418 ||||||||||| | |||||| |||||||||||||||| Sbjct: 26111 ttctgcttcttggtcttggtcgtggagaggaccacag 26147
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 145 bits (73), Expect = 2e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtaaactgcgct 251 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct: 87115 ctgcctgttcttcttcttcacaccagacttggcaacctggaggctgcggtacactgagct 87174 Query: 252 cagtcttgcaagagcaggcttggtcaagtcaggcctgtagtagttgtcactgacctg 308 || ||||||||||| || ||||||| || |||||||||||||||||||| ||||| Sbjct: 87175 aagccttgcaagagccggtttggtcagatctggcctgtagtagttgtcactaacctg 87231 Score = 119 bits (60), Expect = 1e-23 Identities = 124/146 (84%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| ||| Sbjct: 88018 ccagagtgcttgtaggagtgaacattgtacaggttgttgggctccttggtgaactgcacc 88077 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcctgaccagctcc 591 ||||| |||||||| || |||||||| | |||||| |||||||||| | || | |||| Sbjct: 88078 ttggcattgctgtttccaaactgcttcacgaggaagcagttgttcttcttcacaatctcc 88137 Query: 592 cagaccagagaatccgaaaccgtcgc 617 |||| || || |||| ||||||||| Sbjct: 88138 cagaacaaaggctccggaaccgtcgc 88163 Score = 95.6 bits (48), Expect = 2e-16 Identities = 57/60 (95%) Strand = Plus / Plus Query: 304 acctggttcttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgg 363 |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| Sbjct: 87749 acctggttcttgacagccttagccatcttgcggaactccttgcgcatcacagacttgtgg 87808 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 382 ttctgcttctttgacttggttgtggagaggaccacag 418 ||||||||||| | |||||| |||||||||||||||| Sbjct: 87827 ttctgcttcttggtcttggtcgtggagaggaccacag 87863
>gb|DQ427271.1| Sorghum propinquum locus C2782 genomic sequence Length = 724 Score = 127 bits (64), Expect = 5e-26 Identities = 98/110 (89%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 652 ccagagtgcttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 593 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 ||||| |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 592 ttggcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 543
>gb|DQ427270.1| Sorghum bicolor voucher PI585454 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427269.1| Sorghum bicolor voucher PI267539 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427268.1| Sorghum bicolor voucher PI267408 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427267.1| Sorghum bicolor voucher PI221607 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427266.1| Sorghum bicolor voucher PI152702 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427265.1| Sorghum bicolor voucher NSL92371 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427264.1| Sorghum bicolor voucher NSL87902 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427263.1| Sorghum bicolor voucher NSL87666 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427262.1| Sorghum bicolor voucher NSL77217 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427261.1| Sorghum bicolor voucher NSL77034 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427260.1| Sorghum bicolor voucher NSL56174 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427259.1| Sorghum bicolor voucher NSL56003 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427258.1| Sorghum bicolor voucher NSL55243 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427257.1| Sorghum bicolor voucher NSL51365 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427256.1| Sorghum bicolor voucher NSL51030 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427255.1| Sorghum bicolor voucher NSL50875 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>gb|DQ427254.1| Sorghum bicolor voucher BTx623 locus C2782 genomic sequence Length = 708 Score = 111 bits (56), Expect = 3e-21 Identities = 96/110 (87%) Strand = Plus / Minus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| Sbjct: 634 ccagagtgtttgtaggagtggacgttgtagaggttgttgggctccttggtgaactgcacc 575 Query: 532 ttggcgttgctgttgccgaactgcttgatcaggaagnngttgttcttcct 581 || || |||| |||||| |||||||| | |||||| |||||||||||| Sbjct: 574 ttagcattgccgttgccaaactgcttcacaaggaaggagttgttcttcct 525
>ref|NM_127531.2| Arabidopsis thaliana structural constituent of ribosome AT2G19730 transcript variant AT2G19730.1 mRNA, complete cds Length = 717 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| ||||||| Sbjct: 232 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 173 Query: 508 ttgggctccttgctgaactgaacctt 533 || | |||||||||||| |||||||| Sbjct: 172 ttagtctccttgctgaattgaacctt 147 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 ||||||| ||||||||||||||||| Sbjct: 402 tcaagtccggcctgtagtagttgtc 378
>ref|NM_001036297.1| Arabidopsis thaliana structural constituent of ribosome AT2G19730 transcript variant AT2G19730.2 mRNA, complete cds Length = 721 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| ||||||| Sbjct: 236 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 177 Query: 508 ttgggctccttgctgaactgaacctt 533 || | |||||||||||| |||||||| Sbjct: 176 ttagtctccttgctgaattgaacctt 151 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 ||||||| ||||||||||||||||| Sbjct: 406 tcaagtccggcctgtagtagttgtc 382
>gb|AY079378.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730) mRNA, complete cds Length = 463 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| ||||||| Sbjct: 173 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 114 Query: 508 ttgggctccttgctgaactgaacctt 533 || | |||||||||||| |||||||| Sbjct: 113 ttagtctccttgctgaattgaacctt 88 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 ||||||| ||||||||||||||||| Sbjct: 343 tcaagtccggcctgtagtagttgtc 319
>gb|AY050769.1| Arabidopsis thaliana putative ribosomal protein L28 (At2g19730) mRNA, complete cds Length = 647 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| ||||||| Sbjct: 232 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 173 Query: 508 ttgggctccttgctgaactgaacctt 533 || | |||||||||||| |||||||| Sbjct: 172 ttagtctccttgctgaattgaacctt 147 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 ||||||| ||||||||||||||||| Sbjct: 402 tcaagtccggcctgtagtagttgtc 378
>emb|BX820934.1|CNS0A8QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZG10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 695 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| ||||||| Sbjct: 218 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 159 Query: 508 ttgggctccttgctgaactgaacctt 533 || | |||||||||||| |||||||| Sbjct: 158 ttagtctccttgctgaattgaacctt 133 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 ||||||| ||||||||||||||||| Sbjct: 388 tcaagtccggcctgtagtagttgtc 364
>emb|BX821549.1|CNS0A8EE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZB05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 701 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||||||||| |||||||| || ||||||| |||||| ||||| || ||| ||||||| Sbjct: 220 gtcacagtctttttgtttgcaagaccagagtgcttgtaagagtgaacgttggtgaggttg 161 Query: 508 ttgggctccttgctgaactgaacctt 533 || | |||||||||||| |||||||| Sbjct: 160 ttagtctccttgctgaattgaacctt 135 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 ||||||| ||||||||||||||||| Sbjct: 390 tcaagtccggcctgtagtagttgtc 366
>gb|DQ200370.1| Solanum tuberosum clone 057E05 unknown mRNA Length = 611 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| |||||||||||||| |||||||||| |||||||||||| | ||| |||| ||| Sbjct: 194 gtcactgtcttcttgtttgctaggccagagtgcttgtaggagtgaaggttgcagagattg 135 Query: 508 ttgggctccttgctgaa 524 || || || |||||||| Sbjct: 134 ttaggttctttgctgaa 118 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 283 ggcctgtagtagttgtcactgacctggttcttgacagccttggccatcttgcggaactcc 342 ||||||||||||||||| | |||||||| | |||||||||||||| ||||||||||| Sbjct: 356 ggcctgtagtagttgtctccaacctggtttgttacagccttggccattctgcggaactcc 297 Query: 343 tt 344 || Sbjct: 296 tt 295
>gb|DQ200369.1| Solanum tuberosum clone 057D08 unknown mRNA Length = 610 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| |||||||||||||| |||||||||| |||||||||||| | ||| |||| ||| Sbjct: 193 gtcactgtcttcttgtttgctaggccagagtgcttgtaggagtgaaggttgcagagattg 134 Query: 508 ttgggctccttgctgaa 524 || || || |||||||| Sbjct: 133 ttaggttctttgctgaa 117 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 283 ggcctgtagtagttgtcactgacctggttcttgacagccttggccatcttgcggaactcc 342 ||||||||||||||||| | |||||||| | |||||||||||||| ||||||||||| Sbjct: 355 ggcctgtagtagttgtctccaacctggtttgttacagccttggccattctgcggaactcc 296 Query: 343 tt 344 || Sbjct: 295 tt 294
>ref|NM_119086.3| Arabidopsis thaliana structural constituent of ribosome AT4G29410 mRNA, complete cds Length = 709 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| ||||||| Sbjct: 255 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 196 Query: 508 ttgggctccttgctgaactgaaccttggc 536 ||| ||| |||||||||||||||||||| Sbjct: 195 ttgctctctttgctgaactgaaccttggc 167 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 425 tcaaatcaggcctgtagtagttgtc 401
>gb|BT000047.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete cds Length = 556 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| ||||||| Sbjct: 173 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 114 Query: 508 ttgggctccttgctgaactgaaccttggc 536 ||| ||| |||||||||||||||||||| Sbjct: 113 ttgctctctttgctgaactgaaccttggc 85 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 343 tcaaatcaggcctgtagtagttgtc 319
>gb|AY072328.1| Arabidopsis thaliana putative protein (At4g29410) mRNA, complete cds Length = 660 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| ||||||| Sbjct: 250 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 191 Query: 508 ttgggctccttgctgaactgaaccttggc 536 ||| ||| |||||||||||||||||||| Sbjct: 190 ttgctctctttgctgaactgaaccttggc 162 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 420 tcaaatcaggcctgtagtagttgtc 396
>emb|BX829363.1|CNS0A3JN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL95ZC06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 675 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| ||||||| Sbjct: 240 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 181 Query: 508 ttgggctccttgctgaactgaaccttggc 536 ||| ||| |||||||||||||||||||| Sbjct: 180 ttgctctctttgctgaactgaaccttggc 152 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 410 tcaaatcaggcctgtagtagttgtc 386
>emb|BX828625.1|CNS0A2F6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL22ZH11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 691 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| ||||||| Sbjct: 237 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 178 Query: 508 ttgggctccttgctgaactgaaccttggc 536 ||| ||| |||||||||||||||||||| Sbjct: 177 ttgctctctttgctgaactgaaccttggc 149 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 407 tcaaatcaggcctgtagtagttgtc 383
>gb|AY088304.1| Arabidopsis thaliana clone 5426 mRNA, complete sequence Length = 665 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 448 gtcacagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttg 507 ||||| ||||| ||||| |||| ||||||| |||||| |||| || ||| ||||||| Sbjct: 255 gtcactgtctttttgttggccaaaccagagtgcttgtacgagttgatgttgacgaggttg 196 Query: 508 ttgggctccttgctgaactgaaccttggc 536 ||| ||| |||||||||||||||||||| Sbjct: 195 ttgctctctttgctgaactgaaccttggc 167 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 425 tcaaatcaggcctgtagtagttgtc 401
>gb|BT013039.1| Lycopersicon esculentum clone 114289R, mRNA sequence Length = 708 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 451 acagtcttcttgtttgccaggccagagtacttgtaggagtggacattgtagaggttgttg 510 ||||| ||||||||||| |||||||||| |||||| ||||| | |||| | || ||||| Sbjct: 216 acagttttcttgtttgctaggccagagtgcttgtaagagtgaagattgcaaagattgtta 157 Query: 511 ggctccttgct 521 ||||| ||||| Sbjct: 156 ggctctttgct 146 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 192 ctgcctgttcttcttcttgacaccagacttggcaacc 228 |||||||||| ||||||| || ||||||||||||||| Sbjct: 472 ctgcctgttcctcttcttcacgccagacttggcaacc 436
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence Length = 126386 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||| ||||| || ||| ||||||||| | |||||||||||| |||||| Sbjct: 111495 ccagagtgcttgtaagagtgaacgttggtgaggttgttagtctccttgctgaattgaacc 111554 Query: 532 tt 533 || Sbjct: 111555 tt 111556 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tcaagtcaggcctgtagtagttgtc 299 ||||||| ||||||||||||||||| Sbjct: 110489 tcaagtccggcctgtagtagttgtc 110513 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 375 aggcttgttctgcttctttgacttggttgtgg 406 |||||||||||||||||| | |||||| |||| Sbjct: 110931 aggcttgttctgcttcttggtcttggtggtgg 110962
>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71 Length = 200001 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||| |||| || ||| |||||||||| ||| ||||||||||||||| Sbjct: 4467 ccagagtgcttgtacgagttgatgttgacgaggttgttgctctctttgctgaactgaacc 4526 Query: 532 ttggc 536 ||||| Sbjct: 4527 ttggc 4531 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 3179 tcaaatcaggcctgtagtagttgtc 3203
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 50.1 bits (25), Expect = 0.009 Identities = 55/65 (84%) Strand = Plus / Plus Query: 472 ccagagtacttgtaggagtggacattgtagaggttgttgggctccttgctgaactgaacc 531 ||||||| |||||| |||| || ||| |||||||||| ||| ||||||||||||||| Sbjct: 197896 ccagagtgcttgtacgagttgatgttgacgaggttgttgctctctttgctgaactgaacc 197955 Query: 532 ttggc 536 ||||| Sbjct: 197956 ttggc 197960 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tcaagtcaggcctgtagtagttgtc 299 |||| |||||||||||||||||||| Sbjct: 196608 tcaaatcaggcctgtagtagttgtc 196632
>emb|AL034380.26|HS50O24 Human DNA sequence from clone RP1-50O24 on chromosome 1p35.1-35.3 Contains the 3' end of the SMARCF1 gene for SWI/SNF related, matrix associated, actin dependent regulator of chromatin (subfamily f, member 1), a novel gene (FLJ20477), the ZDHHC18 gene for zinc finger, DHHC domain containing 18, the SFN gene for stratifin, two novel genes, a novel gene (FLJ10349), the 3' end of a novel gene (FLJ12455) and two CpG islands, complete sequence Length = 157435 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 aagtcaggcctgtagtagttgt 298 |||||||||||||||||||||| Sbjct: 89352 aagtcaggcctgtagtagttgt 89373
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 375 aggcttgttctgcttctttgac 396 |||||||||||||||||||||| Sbjct: 765882 aggcttgttctgcttctttgac 765861
>gb|AC118596.7| Mus musculus chromosome 1, clone RP24-199M24, complete sequence Length = 149611 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 491 ggacattgtagaggttgttggg 512 |||||||||||||||||||||| Sbjct: 82302 ggacattgtagaggttgttggg 82281
>emb|AL353685.23| Human DNA sequence from clone RP11-31J20 on chromosome 9 Contains part of the ABCA1 gene for ATP-binding cassette sub-family A (ABC1) member 1, complete sequence Length = 129608 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 cataaaccaacgcatccacaa 163 ||||||||||||||||||||| Sbjct: 73140 cataaaccaacgcatccacaa 73160
>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence Length = 188519 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 acttggcaacctggaggctgc 238 ||||||||||||||||||||| Sbjct: 110381 acttggcaacctggaggctgc 110361
>gb|AF287262.1|AF287262 Homo sapiens ATP-binding cassette 1 sub-family A member 1 (ABCA1) and SNAP protein genes, complete cds Length = 201144 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 cataaaccaacgcatccacaa 163 ||||||||||||||||||||| Sbjct: 106420 cataaaccaacgcatccacaa 106400
>gb|AF400192.1| Spodoptera frugiperda ribosomal protein L28 mRNA, complete cds Length = 540 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 505 ttgttgggctccttgctgaac 525 ||||||||||||||||||||| Sbjct: 168 ttgttgggctccttgctgaac 148
>gb|AF275948.1|AF275948 Homo sapiens ABCA1 (ABCA1) gene, complete cds Length = 149034 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 cataaaccaacgcatccacaa 163 ||||||||||||||||||||| Sbjct: 73099 cataaaccaacgcatccacaa 73079
>dbj|AB180416.1| Plutella xylostella mRNA for Ribosomal protein L28, complete cds Length = 514 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 505 ttgttgggctccttgctgaac 525 ||||||||||||||||||||| Sbjct: 174 ttgttgggctccttgctgaac 154
>emb|AJ234454.1|HVU234454 Hordeum vulgare genomic DNA fragment; clone MWG0010 Length = 287 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 479 acttgtaggagtggacattgtagaggttg 507 ||||||||||| || |||||||||||||| Sbjct: 210 acttgtaggagcggccattgtagaggttg 238
>dbj|AP006462.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-813O18, complete sequence Length = 98815 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 acttggcaacctggaggctgc 238 ||||||||||||||||||||| Sbjct: 82205 acttggcaacctggaggctgc 82225
>gb|AC164111.4| Mus musculus BAC clone RP23-267E11 from chromosome 6, complete sequence Length = 179265 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tcatcatattcaacctccat 112 |||||||||||||||||||| Sbjct: 106726 tcatcatattcaacctccat 106745
>gb|AF177668.1| Mus musculus Irf6 (Irf6) gene, exons 2 through 6 and partial cds Length = 10579 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 377 gcttgttctgcttctttgacttggttgt 404 |||| |||||||||||||| |||||||| Sbjct: 5666 gcttcttctgcttctttgagttggttgt 5639
>gb|AC118255.32| Mus musculus chromosome 8, clone RP24-89A4, complete sequence Length = 200858 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 19032 agaacctagtgagaatactt 19051
>ref|XM_367987.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07891.4) partial mRNA Length = 1458 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 tttgccaggccagagtactt 482 |||||||||||||||||||| Sbjct: 1288 tttgccaggccagagtactt 1307
>gb|DQ440103.1| Aedes aegypti clone AE-439 ribosomal protein L28 mRNA, complete cds Length = 459 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 aggttgttgggctccttgctgaac 525 ||||||||||||||| |||||||| Sbjct: 110 aggttgttgggctccgtgctgaac 87
>gb|AC183432.1| Ornithorhynchus anatinus BAC clone OABb-35B8 from chromosome unknown, complete sequence Length = 142253 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ctagcccctcagtgcttact 193 |||||||||||||||||||| Sbjct: 112715 ctagcccctcagtgcttact 112734
>ref|XR_004076.1| PREDICTED: Mus musculus similar to interferon regulatory factor 2 binding protein 2 (LOC672960), mRNA Length = 4398 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 2761 agaacctagtgagaatactt 2780
>ref|XM_001002526.1| PREDICTED: Mus musculus interferon regulatory factor 2 binding protein 2 (Irf2bp2), mRNA Length = 4290 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 2653 agaacctagtgagaatactt 2672
>ref|XM_902821.2| PREDICTED: Mus musculus interferon regulatory factor 2 binding protein 2, transcript variant 2 (Irf2bp2), mRNA Length = 3900 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 2263 agaacctagtgagaatactt 2282
>ref|XM_284454.5| PREDICTED: Mus musculus interferon regulatory factor 2 binding protein 2, transcript variant 1 (Irf2bp2), mRNA Length = 4532 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 2895 agaacctagtgagaatactt 2914
>gb|AC111117.15| Mus musculus chromosome 1, clone RP23-214P23, complete sequence Length = 201442 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 ctccttgctgaactgaacct 532 |||||||||||||||||||| Sbjct: 139019 ctccttgctgaactgaacct 139038
>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence Length = 210092 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tcatcatattcaacctccat 112 |||||||||||||||||||| Sbjct: 24680 tcatcatattcaacctccat 24699
>emb|AL354683.12| Human DNA sequence from clone RP11-259K11 on chromosome 20, complete sequence Length = 11882 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ttctttgacttggttgtgga 407 |||||||||||||||||||| Sbjct: 1488 ttctttgacttggttgtgga 1469
>emb|CR937652.1| Single read from an extremity of a cDNA clone made from Aedes aegypti total adult females. 3-prime end of clone KW0AAB1YJ17BBM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 640 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 aggttgttgggctccttgctgaac 525 ||||||||||||||| |||||||| Sbjct: 482 aggttgttgggctccgtgctgaac 505
>emb|CR937144.1| Single read from an extremity of a cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAB2YM17AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 667 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 aggttgttgggctccttgctgaac 525 ||||||||||||||| |||||||| Sbjct: 153 aggttgttgggctccgtgctgaac 130
>gb|AC024651.13| Homo sapiens chromosome 15, clone RP11-753A21, complete sequence Length = 212185 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ctccatactcttagaacaaa 126 |||||||||||||||||||| Sbjct: 149114 ctccatactcttagaacaaa 149095
>dbj|AK168884.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920062H08 product:unclassifiable, full insert sequence Length = 2794 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 1161 agaacctagtgagaatactt 1180
>dbj|AK168861.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920061J23 product:unclassifiable, full insert sequence Length = 2794 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 1161 agaacctagtgagaatactt 1180
>dbj|AK163095.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530065E07 product:unclassifiable, full insert sequence Length = 990 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 141 agaacctagtgagaatactt 160
>gb|AC137157.3| Mus musculus BAC clone RP23-377M11 from chromosome 8, complete sequence Length = 187666 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 148868 agaacctagtgagaatactt 148887
>dbj|AK087491.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130305N23 product:BRAIN MY039 PROTEIN homolog [Homo sapiens], full insert sequence Length = 3248 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 1612 agaacctagtgagaatactt 1631
>dbj|AK045307.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130064H07 product:unclassifiable, full insert sequence Length = 2723 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 agaacctagtgagaatactt 69 |||||||||||||||||||| Sbjct: 1091 agaacctagtgagaatactt 1110
>dbj|AK037932.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130064P06 product:interferon regulatory factor 6, full insert sequence Length = 2185 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 377 gcttgttctgcttctttgacttggttgt 404 |||| |||||||||||||| |||||||| Sbjct: 963 gcttcttctgcttctttgagttggttgt 936
>emb|BX935932.2| Gallus gallus finished cDNA, clone ChEST429o3 Length = 1048 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 gctccttgctgaactgaacc 531 |||||||||||||||||||| Sbjct: 784 gctccttgctgaactgaacc 765
>emb|BX933512.2| Gallus gallus finished cDNA, clone ChEST659n17 Length = 1045 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 gctccttgctgaactgaacc 531 |||||||||||||||||||| Sbjct: 784 gctccttgctgaactgaacc 765
>gb|AC007879.4| Homo sapiens BAC clone RP11-309L6 from 2, complete sequence Length = 158841 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 cacagtcatctccttctcag 433 |||||||||||||||||||| Sbjct: 4625 cacagtcatctccttctcag 4644
>emb|AL805898.11| Mouse DNA sequence from clone RP23-432F24 on chromosome 4, complete sequence Length = 215828 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 423 ctccttctcagcagcaggctgcac 446 ||||||||||||||||||| |||| Sbjct: 100690 ctccttctcagcagcaggcagcac 100667
>dbj|AB028621.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUJ8 Length = 78921 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 aaaaagtcggaaacataaac 149 |||||||||||||||||||| Sbjct: 55941 aaaaagtcggaaacataaac 55922
>dbj|AP003080.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-223E3, complete sequence Length = 151349 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 aaaccaacgcatccacaaaataag 169 ||||||| |||||||||||||||| Sbjct: 55872 aaaccaatgcatccacaaaataag 55895
>dbj|AP003079.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-141E21, complete sequence Length = 166045 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 aaaccaacgcatccacaaaataag 169 ||||||| |||||||||||||||| Sbjct: 153780 aaaccaatgcatccacaaaataag 153803
>dbj|AP001271.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-826F13, complete sequence Length = 210402 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 tcttcctgaccagctcccag 594 |||||||||||||||||||| Sbjct: 89493 tcttcctgaccagctcccag 89512
>gb|AF031241.1|AF031241 Glycine max endoplasmic reticulum HSC70-cognate binding protein precursor (BIP) mRNA, complete cds Length = 2180 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ttgtcactgacctggttctt 314 |||||||||||||||||||| Sbjct: 1792 ttgtcactgacctggttctt 1773
>emb|AL365322.10| Mouse DNA sequence from clone RP23-282D4 on chromosome 1, complete sequence Length = 259487 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 377 gcttgttctgcttctttgacttggttgt 404 |||| |||||||||||||| |||||||| Sbjct: 71130 gcttcttctgcttctttgagttggttgt 71157 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,990,570 Number of Sequences: 3902068 Number of extensions: 5990570 Number of successful extensions: 99437 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99165 Number of HSP's gapped (non-prelim): 261 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
