Clone Information

BLAST Search Result

Clone Name	rbags30o23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK065200.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	539	e-150
2	dbj\|AK065034.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	539	e-150
3	ref\|NM_196425.1\| Oryza sativa (japonica cultivar-group) unknown ...	509	e-141
4	gb\|AC021893.18\|AC021893 Genomic Sequence for Oryza sativa, Nippo...	165	2e-37
5	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	165	2e-37
6	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	165	2e-37
7	ref\|NM_101296.3\| Arabidopsis thaliana unknown protein AT1G14300 ...	66	2e-07
8	gb\|BT024729.1\| Arabidopsis thaliana At1g14300 mRNA, complete cds	66	2e-07
9	emb\|BX816048.1\|CNS0ADVB Arabidopsis thaliana Full-length cDNA Co...	66	2e-07
10	emb\|BX815542.1\|CNS0ACZL Arabidopsis thaliana Full-length cDNA Co...	66	2e-07
11	emb\|BX815675.1\|CNS0ACZ3 Arabidopsis thaliana Full-length cDNA Co...	66	2e-07
12	emb\|BX816431.1\|CNS0AAP5 Arabidopsis thaliana Full-length cDNA Co...	66	2e-07
13	dbj\|AK117381.1\| Arabidopsis thaliana At1g14300 mRNA for unknown ...	66	2e-07
14	gb\|AC149290.1\| Solanum demissum chromosome 5 clone PGEC093P17 ma...	58	4e-05
15	gb\|AC149291.1\| Solanum demissum chromosome 5 clone PGEC568H16 ma...	58	4e-05
16	gb\|AC149301.1\| Solanum demissum chromosome 5 clone PGEC517A09 ma...	58	4e-05
17	gb\|CP000111.1\| Prochlorococcus marinus str. MIT 9312, complete g...	44	0.60
18	emb\|AL161747.5\|CNS01RHF Human chromosome 14 DNA sequence BAC R-6...	44	0.60
19	gb\|AC127554.4\| Mus musculus BAC clone RP24-323K23 from chromosom...	42	2.4
20	gb\|AC157802.8\| Mus musculus chromosome 1, clone RP24-297D18, com...	42	2.4
21	dbj\|AB223676.1\| Aspergillus oryzae cDNA, contig sequence: AoEST0516	42	2.4
22	dbj\|AP007155.1\| Aspergillus oryzae RIB40 genomic DNA, SC003	42	2.4
23	gb\|AC097347.6\| Homo sapiens X BAC RP11-1M18 (Roswell Park Cancer...	42	2.4
24	emb\|AL806528.14\| Mouse DNA sequence from clone RP23-190C17 on ch...	42	2.4
25	gb\|AC120370.9\| Mus musculus chromosome 1, clone RP24-441N3, comp...	42	2.4
26	ref\|XM_323700.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.4
27	ref\|XM_951236.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.4
28	emb\|CR956399.4\| M.truncatula DNA sequence from clone MTH2-7L7 on...	40	9.4
29	gb\|AC016885.16\| Homo sapiens chromosome 8, clone RP11-388K12, co...	40	9.4
30	emb\|BX842629.1\| Neurospora crassa DNA linkage group I BAC contig...	40	9.4
31	emb\|CR933018.9\| Zebrafish DNA sequence from clone CH211-224H1 in...	40	9.4
32	emb\|BX511143.4\| Zebrafish DNA sequence from clone DKEY-258H10 in...	40	9.4
33	gb\|AC022825.9\| Homo sapiens chromosome 8, clone RP11-88J22, comp...	40	9.4
34	emb\|BX664714.16\| Zebrafish DNA sequence from clone DKEY-204C3 in...	40	9.4
35	emb\|BX088598.7\| Zebrafish DNA sequence from clone CH211-197J3 in...	40	9.4
36	gb\|AC012188.2\|F14L17 Sequence of BAC F14L17 from Arabidopsis tha...	40	9.4
37	emb\|AL929161.10\| Zebrafish DNA sequence from clone CH211-93A19, ...	40	9.4
38	dbj\|AB231882.1\| Scolionema suvaense gene for zinc finger protein...	40	9.4

>dbj|AK065200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E22, full
            insert sequence
          Length = 1341

 Score =  539 bits (272), Expect = e-150
 Identities = 444/500 (88%), Gaps = 1/500 (0%)
 Strand = Plus / Minus

                                                                        
Query: 185  ctccttgctcttgatcttgttcaatttcacccttgccaacaagcaaagaaccaatcaact 244
            ||||||| ||||||||||| |||   ||||||||||||||||||| ||| ||||| ||||
Sbjct: 1081 ctccttgttcttgatcttgctcatcatcacccttgccaacaagcagagatccaattaact 1022

                                                                        
Query: 245  catatgctcccatcactttcaagtcctcttcgtcttcataaccaacctgcagtatccgtg 304
            | |||||| ||||||||||   |||||| |||||||||||||||||||||||||| || |
Sbjct: 1021 cgtatgcttccatcacttttgggtcctcctcgtcttcataaccaacctgcagtattcgcg 962

                                                                        
Query: 305  gcccattgactgaccaaaaggcctttcgtccatcatcctgcatcacgatcatataaatag 364
            | ||||||||||||||||| ||| ||||||| |||||||| |  || |||||||||||||
Sbjct: 961  gaccattgactgaccaaaaagcccttcgtccttcatcctgaaggacaatcatataaatag 902

                                                                        
Query: 365  cctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgttcatgagaaagtg 424
            |||| |||||| |||  ||||||||||| |  |||||||  ||||||||||| || ||||
Sbjct: 901  cctcaagtgcctgttgccgaatttcagagttctcaacagcctctcgttcatgggagagtg 842

                                                                        
Query: 425  cattcgcaagctcgggaggcattttc-gaagtatcttcttcgctgtagatcttctttcca 483
            |||| |||||||| |||||||||||  ||  |||||||||| ||||||||||||||||||
Sbjct: 841  catttgcaagctcaggaggcattttttgatctatcttcttcactgtagatcttctttcca 782

                                                                        
Query: 484  gctacaggcaaaagtagagctggccaaagatattctgctatagaaagcaaattttgtatc 543
            ||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||| 
Sbjct: 781  gctacgggcaaaagtagagctggccaaatatattctgctagagagagcaaattttgtatt 722

                                                                        
Query: 544  tgggtatcagcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagt 603
            ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 721  tgggtatcagcttcaaagcaacagttacggatggtgctaacaacccctttctttctaagt 662

                                                                        
Query: 604  tggtttgttgaatcaaattgccctataatctgctttagaagacctctcttaggttccatc 663
            ||||||||||||||| |||||| ||||||||| |||| ||| ||||||||||||||||||
Sbjct: 661  tggtttgttgaatcagattgccgtataatctgttttaaaaggcctctcttaggttccatc 602

                                
Query: 664  agtattctccgtccagcttc 683
            |||||||||| |||||||||
Sbjct: 601  agtattctccttccagcttc 582

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>dbj|AK065034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H04, full
            insert sequence
          Length = 1216

 Score =  539 bits (272), Expect = e-150
 Identities = 444/500 (88%), Gaps = 1/500 (0%)
 Strand = Plus / Minus

                                                                        
Query: 185  ctccttgctcttgatcttgttcaatttcacccttgccaacaagcaaagaaccaatcaact 244
            ||||||| ||||||||||| |||   ||||||||||||||||||| ||| ||||| ||||
Sbjct: 1081 ctccttgttcttgatcttgctcatcatcacccttgccaacaagcagagatccaattaact 1022

                                                                        
Query: 245  catatgctcccatcactttcaagtcctcttcgtcttcataaccaacctgcagtatccgtg 304
            | |||||| ||||||||||   |||||| |||||||||||||||||||||||||| || |
Sbjct: 1021 cgtatgcttccatcacttttgggtcctcctcgtcttcataaccaacctgcagtattcgcg 962

                                                                        
Query: 305  gcccattgactgaccaaaaggcctttcgtccatcatcctgcatcacgatcatataaatag 364
            | ||||||||||||||||| ||| ||||||| |||||||| |  || |||||||||||||
Sbjct: 961  gaccattgactgaccaaaaagcccttcgtccttcatcctgaaggacaatcatataaatag 902

                                                                        
Query: 365  cctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgttcatgagaaagtg 424
            |||| |||||| |||  ||||||||||| |  |||||||  ||||||||||| || ||||
Sbjct: 901  cctcaagtgcctgttgccgaatttcagagttctcaacagcctctcgttcatgggagagtg 842

                                                                        
Query: 425  cattcgcaagctcgggaggcattttc-gaagtatcttcttcgctgtagatcttctttcca 483
            |||| |||||||| |||||||||||  ||  |||||||||| ||||||||||||||||||
Sbjct: 841  catttgcaagctcaggaggcattttttgatctatcttcttcactgtagatcttctttcca 782

                                                                        
Query: 484  gctacaggcaaaagtagagctggccaaagatattctgctatagaaagcaaattttgtatc 543
            ||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||||||| 
Sbjct: 781  gctacgggcaaaagtagagctggccaaatatattctgctagagagagcaaattttgtatt 722

                                                                        
Query: 544  tgggtatcagcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagt 603
            ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 721  tgggtatcagcttcaaagcaacagttacggatggtgctaacaacccctttctttctaagt 662

                                                                        
Query: 604  tggtttgttgaatcaaattgccctataatctgctttagaagacctctcttaggttccatc 663
            ||||||||||||||| |||||| ||||||||| |||| ||| ||||||||||||||||||
Sbjct: 661  tggtttgttgaatcagattgccgtataatctgttttaaaaggcctctcttaggttccatc 602

                                
Query: 664  agtattctccgtccagcttc 683
            |||||||||| |||||||||
Sbjct: 601  agtattctccttccagcttc 582

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>ref|NM_196425.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0060A14.15), mRNA
          Length = 1281

 Score =  509 bits (257), Expect = e-141
 Identities = 401/449 (89%)
 Strand = Plus / Minus

                                                                        
Query: 235  ccaatcaactcatatgctcccatcactttcaagtcctcttcgtcttcataaccaacctgc 294
            ||||| ||||| |||||| ||||||||||   |||||| |||||||||||||||||||||
Sbjct: 1052 ccaattaactcgtatgcttccatcacttttgggtcctcctcgtcttcataaccaacctgc 993

                                                                        
Query: 295  agtatccgtggcccattgactgaccaaaaggcctttcgtccatcatcctgcatcacgatc 354
            ||||| || || ||||||||||||||||| ||| ||||||| |||||||| |  || |||
Sbjct: 992  agtattcgcggaccattgactgaccaaaaagcccttcgtccttcatcctgaaggacaatc 933

                                                                        
Query: 355  atataaatagcctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgttca 414
            |||||||||||||| |||||| |||  ||||||||||| |  |||||||  |||||||||
Sbjct: 932  atataaatagcctcaagtgcctgttgccgaatttcagagttctcaacagcctctcgttca 873

                                                                        
Query: 415  tgagaaagtgcattcgcaagctcgggaggcattttcgaagtatcttcttcgctgtagatc 474
            || || |||||||| |||||||| ||||||||||| ||  |||||||||| |||||||||
Sbjct: 872  tgggagagtgcatttgcaagctcaggaggcatttttgatctatcttcttcactgtagatc 813

                                                                        
Query: 475  ttctttccagctacaggcaaaagtagagctggccaaagatattctgctatagaaagcaaa 534
            |||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 812  ttctttccagctacgggcaaaagtagagctggccaaatatattctgctagagagagcaaa 753

                                                                        
Query: 535  ttttgtatctgggtatcagcttcaaagcaacaattacggatggtgccagcaacccctttc 594
            |||||||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct: 752  ttttgtatttgggtatcagcttcaaagcaacagttacggatggtgctaacaacccctttc 693

                                                                        
Query: 595  tttctaagttggtttgttgaatcaaattgccctataatctgctttagaagacctctctta 654
            |||||||||||||||||||||||| |||||| ||||||||| |||| ||| |||||||||
Sbjct: 692  tttctaagttggtttgttgaatcagattgccgtataatctgttttaaaaggcctctctta 633

                                         
Query: 655  ggttccatcagtattctccgtccagcttc 683
            ||||||||||||||||||| |||||||||
Sbjct: 632  ggttccatcagtattctccttccagcttc 604

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>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0060A14, from chromosome 10, complete sequence
          Length = 151343

 Score =  165 bits (83), Expect = 2e-37
 Identities = 101/107 (94%)
 Strand = Plus / Minus

                                                                          
Query: 474    cttctttccagctacaggcaaaagtagagctggccaaagatattctgctatagaaagcaa 533
              ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 100044 cttctttccagctacgggcaaaagtagagctggccaaatatattctgctagagagagcaa 99985

                                                             
Query: 534    attttgtatctgggtatcagcttcaaagcaacaattacggatggtgc 580
              ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 99984  attttgtatttgggtatcagcttcaaagcaacagttacggatggtgc 99938



 Score =  147 bits (74), Expect = 6e-32
 Identities = 92/98 (93%)
 Strand = Plus / Minus

                                                                         
Query: 586   acccctttctttctaagttggtttgttgaatcaaattgccctataatctgctttagaaga 645
             ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| 
Sbjct: 99390 acccctttctttctaagttggtttgttgaatcagattgccgtataatctgttttaaaagg 99331

                                                   
Query: 646   cctctcttaggttccatcagtattctccgtccagcttc 683
             |||||||||||||||||||||||||||| |||||||||
Sbjct: 99330 cctctcttaggttccatcagtattctccttccagcttc 99293



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                          
Query: 235    ccaatcaactcatatgctcccatcactttcaagtcctcttcgtcttcataaccaacctgc 294
              ||||| ||||| |||||| ||||||||||   |||||| |||||||||||||||||||||
Sbjct: 101626 ccaattaactcgtatgcttccatcacttttgggtcctcctcgtcttcataaccaacctgc 101567

                                                                
Query: 295    agtatccgtggcccattgactgaccaaaaggcctttcgtccatcatcctg 344
              ||||| || || ||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 101566 agtattcgcggaccattgactgaccaaaaagcccttcgtccttcatcctg 101517



 Score =  111 bits (56), Expect = 3e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                          
Query: 352    atcatataaatagcctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgt 411
              ||||||||||||||||| |||||| |||  ||||||||||| |  |||||||  ||||||
Sbjct: 100694 atcatataaatagcctcaagtgcctgttgccgaatttcagagttctcaacagcctctcgt 100635

                                                                          
Query: 412    tcatgagaaagtgcattcgcaagctcgggaggcattttcgaagtatcttcttcgctgtag 471
              ||||| || |||||||| |||||||| ||||||||||| ||  |||||||||| ||||||
Sbjct: 100634 tcatgggagagtgcatttgcaagctcaggaggcatttttgatctatcttcttcactgtag 100575

                  
Query: 472    atct 475
              ||||
Sbjct: 100574 atct 100571



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 185    ctccttgctcttgatcttgttcaatttcacccttgccaacaagc 228
              ||||||| ||||||||||| |||   ||||||||||||||||||
Sbjct: 102447 ctccttgttcttgatcttgctcatcatcacccttgccaacaagc 102404

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  165 bits (83), Expect = 2e-37
 Identities = 101/107 (94%)
 Strand = Plus / Minus

                                                                            
Query: 474      cttctttccagctacaggcaaaagtagagctggccaaagatattctgctatagaaagcaa 533
                ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 13407667 cttctttccagctacgggcaaaagtagagctggccaaatatattctgctagagagagcaa 13407608

                                                               
Query: 534      attttgtatctgggtatcagcttcaaagcaacaattacggatggtgc 580
                ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 13407607 attttgtatttgggtatcagcttcaaagcaacagttacggatggtgc 13407561



 Score =  147 bits (74), Expect = 6e-32
 Identities = 92/98 (93%)
 Strand = Plus / Minus

                                                                            
Query: 586      acccctttctttctaagttggtttgttgaatcaaattgccctataatctgctttagaaga 645
                ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| 
Sbjct: 13407013 acccctttctttctaagttggtttgttgaatcagattgccgtataatctgttttaaaagg 13406954

                                                      
Query: 646      cctctcttaggttccatcagtattctccgtccagcttc 683
                |||||||||||||||||||||||||||| |||||||||
Sbjct: 13406953 cctctcttaggttccatcagtattctccttccagcttc 13406916



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                            
Query: 235      ccaatcaactcatatgctcccatcactttcaagtcctcttcgtcttcataaccaacctgc 294
                ||||| ||||| |||||| ||||||||||   |||||| |||||||||||||||||||||
Sbjct: 13409249 ccaattaactcgtatgcttccatcacttttgggtcctcctcgtcttcataaccaacctgc 13409190

                                                                  
Query: 295      agtatccgtggcccattgactgaccaaaaggcctttcgtccatcatcctg 344
                ||||| || || ||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 13409189 agtattcgcggaccattgactgaccaaaaagcccttcgtccttcatcctg 13409140



 Score =  111 bits (56), Expect = 3e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                            
Query: 352      atcatataaatagcctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgt 411
                ||||||||||||||||| |||||| |||  ||||||||||| |  |||||||  ||||||
Sbjct: 13408317 atcatataaatagcctcaagtgcctgttgccgaatttcagagttctcaacagcctctcgt 13408258

                                                                            
Query: 412      tcatgagaaagtgcattcgcaagctcgggaggcattttcgaagtatcttcttcgctgtag 471
                ||||| || |||||||| |||||||| ||||||||||| ||  |||||||||| ||||||
Sbjct: 13408257 tcatgggagagtgcatttgcaagctcaggaggcatttttgatctatcttcttcactgtag 13408198

                    
Query: 472      atct 475
                ||||
Sbjct: 13408197 atct 13408194



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 185      ctccttgctcttgatcttgttcaatttcacccttgccaacaagc 228
                ||||||| ||||||||||| |||   ||||||||||||||||||
Sbjct: 13410070 ctccttgttcttgatcttgctcatcatcacccttgccaacaagc 13410027

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  165 bits (83), Expect = 2e-37
 Identities = 101/107 (94%)
 Strand = Plus / Minus

                                                                            
Query: 474      cttctttccagctacaggcaaaagtagagctggccaaagatattctgctatagaaagcaa 533
                ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 13415007 cttctttccagctacgggcaaaagtagagctggccaaatatattctgctagagagagcaa 13414948

                                                               
Query: 534      attttgtatctgggtatcagcttcaaagcaacaattacggatggtgc 580
                ||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 13414947 attttgtatttgggtatcagcttcaaagcaacagttacggatggtgc 13414901



 Score =  147 bits (74), Expect = 6e-32
 Identities = 92/98 (93%)
 Strand = Plus / Minus

                                                                            
Query: 586      acccctttctttctaagttggtttgttgaatcaaattgccctataatctgctttagaaga 645
                ||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| 
Sbjct: 13414353 acccctttctttctaagttggtttgttgaatcagattgccgtataatctgttttaaaagg 13414294

                                                      
Query: 646      cctctcttaggttccatcagtattctccgtccagcttc 683
                |||||||||||||||||||||||||||| |||||||||
Sbjct: 13414293 cctctcttaggttccatcagtattctccttccagcttc 13414256



 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                            
Query: 235      ccaatcaactcatatgctcccatcactttcaagtcctcttcgtcttcataaccaacctgc 294
                ||||| ||||| |||||| ||||||||||   |||||| |||||||||||||||||||||
Sbjct: 13416589 ccaattaactcgtatgcttccatcacttttgggtcctcctcgtcttcataaccaacctgc 13416530

                                                                  
Query: 295      agtatccgtggcccattgactgaccaaaaggcctttcgtccatcatcctg 344
                ||||| || || ||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 13416529 agtattcgcggaccattgactgaccaaaaagcccttcgtccttcatcctg 13416480



 Score =  111 bits (56), Expect = 3e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                            
Query: 352      atcatataaatagcctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgt 411
                ||||||||||||||||| |||||| |||  ||||||||||| |  |||||||  ||||||
Sbjct: 13415657 atcatataaatagcctcaagtgcctgttgccgaatttcagagttctcaacagcctctcgt 13415598

                                                                            
Query: 412      tcatgagaaagtgcattcgcaagctcgggaggcattttcgaagtatcttcttcgctgtag 471
                ||||| || |||||||| |||||||| ||||||||||| ||  |||||||||| ||||||
Sbjct: 13415597 tcatgggagagtgcatttgcaagctcaggaggcatttttgatctatcttcttcactgtag 13415538

                    
Query: 472      atct 475
                ||||
Sbjct: 13415537 atct 13415534



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 185      ctccttgctcttgatcttgttcaatttcacccttgccaacaagc 228
                ||||||| ||||||||||| |||   ||||||||||||||||||
Sbjct: 13417410 ctccttgttcttgatcttgctcatcatcacccttgccaacaagc 13417367

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>ref|NM_101296.3| Arabidopsis thaliana unknown protein AT1G14300 mRNA, complete cds
          Length = 1397

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 553 gcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagttggtttgtt 612
           |||||||| ||||| ||||| || || |||||||||||||||||||  | ||| ||||||
Sbjct: 734 gcttcaaaacaacagttacgaatagtcccagcaacccctttctttcgcaattgatttgtt 675

                        
Query: 613 gaatcaaattgcc 625
           |||||||| ||||
Sbjct: 674 gaatcaaactgcc 662

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>gb|BT024729.1| Arabidopsis thaliana At1g14300 mRNA, complete cds
          Length = 1020

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 553 gcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagttggtttgtt 612
           |||||||| ||||| ||||| || || |||||||||||||||||||  | ||| ||||||
Sbjct: 635 gcttcaaaacaacagttacgaatagtcccagcaacccctttctttcgcaattgatttgtt 576

                        
Query: 613 gaatcaaattgcc 625
           |||||||| ||||
Sbjct: 575 gaatcaaactgcc 563

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>emb|BX816048.1|CNS0ADVB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH25ZA01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1396

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 553 gcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagttggtttgtt 612
           |||||||| ||||| ||||| || || |||||||||||||||||||  | ||| ||||||
Sbjct: 734 gcttcaaaacaacagttacgaatagtcccagcaacccctttctttcgcaattgatttgtt 675

                        
Query: 613 gaatcaaattgcc 625
           |||||||| ||||
Sbjct: 674 gaatcaaactgcc 662

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>emb|BX815542.1|CNS0ACZL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZD07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1288

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 553 gcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagttggtttgtt 612
           |||||||| ||||| ||||| || || |||||||||||||||||||  | ||| ||||||
Sbjct: 702 gcttcaaaacaacagttacgaatagtcccagcaacccctttctttcgcaattgatttgtt 643

                        
Query: 613 gaatcaaattgcc 625
           |||||||| ||||
Sbjct: 642 gaatcaaactgcc 630

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>emb|BX815675.1|CNS0ACZ3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS82ZE07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1392

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 553 gcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagttggtttgtt 612
           |||||||| ||||| ||||| || || |||||||||||||||||||  | ||| ||||||
Sbjct: 734 gcttcaaaacaacagttacgaatagtcccagcaacccctttctttcgcaattgatttgtt 675

                        
Query: 613 gaatcaaattgcc 625
           |||||||| ||||
Sbjct: 674 gaatcaaactgcc 662

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>emb|BX816431.1|CNS0AAP5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH48ZA09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1258

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 553 gcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagttggtttgtt 612
           |||||||| ||||| ||||| || || |||||||||||||||||||  | ||| ||||||
Sbjct: 694 gcttcaaaacaacagttacgaatagtcccagcaacccctttctttcgcaattgatttgtt 635

                        
Query: 613 gaatcaaattgcc 625
           |||||||| ||||
Sbjct: 634 gaatcaaactgcc 622

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>dbj|AK117381.1| Arabidopsis thaliana At1g14300 mRNA for unknown protein, complete
           cds, clone: RAFL16-96-K21
          Length = 1347

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 553 gcttcaaagcaacaattacggatggtgccagcaacccctttctttctaagttggtttgtt 612
           |||||||| ||||| ||||| || || |||||||||||||||||||  | ||| ||||||
Sbjct: 703 gcttcaaaacaacagttacgaatagtcccagcaacccctttctttcgcaattgatttgtt 644

                        
Query: 613 gaatcaaattgcc 625
           |||||||| ||||
Sbjct: 643 gaatcaaactgcc 631

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>gb|AC149290.1| Solanum demissum chromosome 5 clone PGEC093P17 map MAP_LOC, complete
            sequence
          Length = 200238

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                     
Query: 357  ataaatagcctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgttc 413
            |||||||||||| |||||| || |||||||||||| ||||  ||||| |||||||||
Sbjct: 5477 ataaatagcctctagtgcctgtacacgaatttcaggatcagtaacaggttctcgttc 5533

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>gb|AC149291.1| Solanum demissum chromosome 5 clone PGEC568H16 map MAP_LOC, complete
              sequence
          Length = 146091

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 357    ataaatagcctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgttc 413
              |||||||||||| |||||| || |||||||||||| ||||  ||||| |||||||||
Sbjct: 139926 ataaatagcctctagtgcctgtacacgaatttcaggatcagtaacaggttctcgttc 139982

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>gb|AC149301.1| Solanum demissum chromosome 5 clone PGEC517A09 map MAP_LOC, complete
             sequence
          Length = 133983

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 357   ataaatagcctcgagtgcccgttcacgaatttcagaatcatcaacagattctcgttc 413
             |||||||||||| |||||| || |||||||||||| ||||  ||||| |||||||||
Sbjct: 75908 ataaatagcctctagtgcctgtacacgaatttcaggatcagtaacaggttctcgttc 75964

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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 178    ttatcttctccttgctcttgatcttg 203
              ||||||||| ||||||||||||||||
Sbjct: 278866 ttatcttcttcttgctcttgatcttg 278841

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>emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-689J19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170588

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 407   ctcgttcatgagaaagtgcatt 428
             ||||||||||||||||||||||
Sbjct: 96097 ctcgttcatgagaaagtgcatt 96118

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>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence
          Length = 178416

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 440   gaggcattttcgaagtatctt 460
             |||||||||||||||||||||
Sbjct: 45383 gaggcattttcgaagtatctt 45363

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>gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, complete sequence
          Length = 154309

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 591    tttctttctaagttggtttgt 611
              |||||||||||||||||||||
Sbjct: 151827 tttctttctaagttggtttgt 151847

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>dbj|AB223676.1| Aspergillus oryzae cDNA, contig sequence: AoEST0516
          Length = 372

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 461 cttcgctgtagatcttctttc 481
           |||||||||||||||||||||
Sbjct: 208 cttcgctgtagatcttctttc 188

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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 461     cttcgctgtagatcttctttc 481
               |||||||||||||||||||||
Sbjct: 3123957 cttcgctgtagatcttctttc 3123977

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>gb|AC097347.6| Homo sapiens X BAC RP11-1M18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160325

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 591    tttctttctaagttggtttgttgaa 615
              |||||||||||||| ||||||||||
Sbjct: 104942 tttctttctaagtttgtttgttgaa 104918

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>emb|AL806528.14| Mouse DNA sequence from clone RP23-190C17 on chromosome 2, complete
              sequence
          Length = 214642

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    cttgctcttgatcttgttcaa 208
              |||||||||||||||||||||
Sbjct: 143207 cttgctcttgatcttgttcaa 143187

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>gb|AC120370.9| Mus musculus chromosome 1, clone RP24-441N3, complete sequence
          Length = 163929

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 591   tttctttctaagttggtttgt 611
             |||||||||||||||||||||
Sbjct: 49747 tttctttctaagttggtttgt 49727

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>ref|XM_323700.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial
            mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  tcttctccttgctcttgatc 200
            ||||||||||||||||||||
Sbjct: 3397 tcttctccttgctcttgatc 3378

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>ref|XM_951236.1| Neurospora crassa OR74A hypothetical protein (NCU04348.1) partial
            mRNA
          Length = 3483

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  tcttctccttgctcttgatc 200
            ||||||||||||||||||||
Sbjct: 3397 tcttctccttgctcttgatc 3378

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>emb|CR956399.4| M.truncatula DNA sequence from clone MTH2-7L7 on chromosome 3, complete
             sequence
          Length = 142604

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 170   attgaggcttatcttctccttgct 193
             ||||| ||||||||||||||||||
Sbjct: 80114 attgacgcttatcttctccttgct 80091

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>gb|AC016885.16| Homo sapiens chromosome 8, clone RP11-388K12, complete sequence
          Length = 210008

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 597 tctaagttggtttgttgaat 616
           ||||||||||||||||||||
Sbjct: 697 tctaagttggtttgttgaat 678

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>emb|BX842629.1| Neurospora crassa DNA linkage group I BAC contig B20J13
          Length = 126048

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   tttcgaagtatcttcttcgc 466
             ||||||||||||||||||||
Sbjct: 91453 tttcgaagtatcttcttcgc 91434

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>emb|CR933018.9| Zebrafish DNA sequence from clone CH211-224H1 in linkage group 4,
            complete sequence
          Length = 181431

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 522  tatagaaagcaaattttgtatctg 545
            |||| |||||||||||||||||||
Sbjct: 6967 tatacaaagcaaattttgtatctg 6990

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>emb|BX511143.4| Zebrafish DNA sequence from clone DKEY-258H10 in linkage group 7,
             complete sequence
          Length = 88364

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 583   gcaacccctttctttctaag 602
             ||||||||||||||||||||
Sbjct: 35265 gcaacccctttctttctaag 35284

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>gb|AC022825.9| Homo sapiens chromosome 8, clone RP11-88J22, complete sequence
          Length = 191772

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 597    tctaagttggtttgttgaat 616
              ||||||||||||||||||||
Sbjct: 165217 tctaagttggtttgttgaat 165198

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>emb|BX664714.16| Zebrafish DNA sequence from clone DKEY-204C3 in linkage group 7, complete
              sequence
          Length = 159633

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 481    ccagctacaggcaaaagtagagct 504
              |||||||||||||||| |||||||
Sbjct: 120856 ccagctacaggcaaaactagagct 120879

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>emb|BX088598.7| Zebrafish DNA sequence from clone CH211-197J3 in linkage group 5,
             complete sequence
          Length = 214842

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   aaactacaaattgcacaaag 158
             ||||||||||||||||||||
Sbjct: 27928 aaactacaaattgcacaaag 27947

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>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111686

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 586   acccctttctttctaagttggtttgttgaatcaaattgcc 625
             |||||||||||||  | ||| |||||||||||||| ||||
Sbjct: 14569 acccctttctttcgcaattgatttgttgaatcaaactgcc 14608

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>emb|AL929161.10| Zebrafish DNA sequence from clone CH211-93A19, complete sequence
          Length = 197027

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 481    ccagctacaggcaaaagtagagct 504
              |||||||||||||||| |||||||
Sbjct: 140767 ccagctacaggcaaaactagagct 140790

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>dbj|AB231882.1| Scolionema suvaense gene for zinc finger protein Ssu-Zic, complete cds
          Length = 46150

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   gctatagaaagcaaattttg 539
             ||||||||||||||||||||
Sbjct: 42140 gctatagaaagcaaattttg 42159


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,675,901
Number of Sequences: 3902068
Number of extensions: 6675901
Number of successful extensions: 128191
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127975
Number of HSP's gapped (non-prelim): 214
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result