ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30o21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein 31 4.0
2CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candid... 31 4.0
3VNFD_AZOVI (P16855) Nitrogenase vanadium-iron protein alpha chai... 30 5.2
4PPCK_COREF (Q8FM16) Phosphoenolpyruvate carboxykinase [GTP] (EC ... 30 6.7
5ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot... 30 6.7

>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
 Frame = -3

Query: 613 ADVDNGWYSGALLYDQDENSGAYKHYSEFCQGPVMDPFEHDPEKEGHYRE--ALSMDMEL 440
           +D+ NGW    +    +EN G    Y        + P E D  +E   RE  A  +  E+
Sbjct: 243 SDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTV-PLEKDNSEEFRQRELRAAQLAREI 301

Query: 439 TDDARVEAEMKAALDDYQVIGSDLSIIPSCGSLAEDPSQLTR 314
               +    +    DD +      S +   GS  E PS ++R
Sbjct: 302 ESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSR 343



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>CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candidate gene 5|
            protein) (ALL1-fused gene from chromosome 15q14)
            (AF15q14) (D40/AF15q14 protein)
          Length = 2342

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = -3

Query: 451  DMELTDDARVEAEMKAAL---DDYQVIGSDLSIIPSCGSLAEDPSQLTR 314
            DM++T    VE + ++AL   +D+ + G+  +I+ SCG   +D  ++TR
Sbjct: 1111 DMDITQSCMVEIDNESALEDKEDFHLAGASKTILYSCG---QDDMEITR 1156



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>VNFD_AZOVI (P16855) Nitrogenase vanadium-iron protein alpha chain (EC|
           1.18.6.1) (Nitrogenase component I) (Dinitrogenase 2
           alpha subunit)
          Length = 473

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
 Frame = -3

Query: 193 NVQKEGIRPFFSSVGSKQTGNH-------SWRPLCDGYRRTGQREAYTGWAGKPRMRRCM 35
           N   EGIR   +  G ++ G          W+P  D Y+   Q +    W G PR+    
Sbjct: 284 NYMAEGIRKICAFFGIEEKGEELIAEEYAKWKPKLDWYKERLQGKKMAIWTGGPRLWHWT 343

Query: 34  YNIHD 20
            ++ D
Sbjct: 344 KSVED 348



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>PPCK_COREF (Q8FM16) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 612

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
 Frame = -3

Query: 529 FCQGPVMDPFEHDPEKEGHYREALSMDMELTDDARVEAEM-------KAALDDYQVIGSD 371
           FC GP+ DP   +P+          + ++LTD A V   M       K ALD     GS 
Sbjct: 131 FCMGPITDP---EPK----------LGVQLTDSAYVVMSMRIMTRMGKDALDKIGENGSF 177

Query: 370 LSIIPSCGSLAEDPSQLTRWIIGDEK 293
           +  + S G+  E+  +   W   D K
Sbjct: 178 VRCLHSVGAPLEEGQEDVAWPCNDTK 203



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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
 Frame = -3

Query: 613 ADVDNGWYSGALLYDQDENSGAYKHYSEFCQGPVMDPFEHDPEKEGHYRE--ALSMDMEL 440
           +D+ NGW    +    +EN G    Y        + P E D  +E   RE  A  +  E+
Sbjct: 245 SDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTV-PLEKDNSEEFRQRELRAAQLAREI 303

Query: 439 TDDARVEAEMKAALDDYQVIGSDLSIIPSCGSLAEDPSQLTR 314
               +    +    DD +      S +   GS  E PS  +R
Sbjct: 304 ESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLASR 345


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,244,742
Number of Sequences: 219361
Number of extensions: 2025105
Number of successful extensions: 6043
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6041
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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