| Clone Name | rbags30o21 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein | 31 | 4.0 | 2 | CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candid... | 31 | 4.0 | 3 | VNFD_AZOVI (P16855) Nitrogenase vanadium-iron protein alpha chai... | 30 | 5.2 | 4 | PPCK_COREF (Q8FM16) Phosphoenolpyruvate carboxykinase [GTP] (EC ... | 30 | 6.7 | 5 | ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot... | 30 | 6.7 |
|---|
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 30.8 bits (68), Expect = 4.0 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 2/102 (1%) Frame = -3 Query: 613 ADVDNGWYSGALLYDQDENSGAYKHYSEFCQGPVMDPFEHDPEKEGHYRE--ALSMDMEL 440 +D+ NGW + +EN G Y + P E D +E RE A + E+ Sbjct: 243 SDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTV-PLEKDNSEEFRQRELRAAQLAREI 301 Query: 439 TDDARVEAEMKAALDDYQVIGSDLSIIPSCGSLAEDPSQLTR 314 + + DD + S + GS E PS ++R Sbjct: 302 ESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSR 343
>CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candidate gene 5| protein) (ALL1-fused gene from chromosome 15q14) (AF15q14) (D40/AF15q14 protein) Length = 2342 Score = 30.8 bits (68), Expect = 4.0 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%) Frame = -3 Query: 451 DMELTDDARVEAEMKAAL---DDYQVIGSDLSIIPSCGSLAEDPSQLTR 314 DM++T VE + ++AL +D+ + G+ +I+ SCG +D ++TR Sbjct: 1111 DMDITQSCMVEIDNESALEDKEDFHLAGASKTILYSCG---QDDMEITR 1156
>VNFD_AZOVI (P16855) Nitrogenase vanadium-iron protein alpha chain (EC| 1.18.6.1) (Nitrogenase component I) (Dinitrogenase 2 alpha subunit) Length = 473 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Frame = -3 Query: 193 NVQKEGIRPFFSSVGSKQTGNH-------SWRPLCDGYRRTGQREAYTGWAGKPRMRRCM 35 N EGIR + G ++ G W+P D Y+ Q + W G PR+ Sbjct: 284 NYMAEGIRKICAFFGIEEKGEELIAEEYAKWKPKLDWYKERLQGKKMAIWTGGPRLWHWT 343 Query: 34 YNIHD 20 ++ D Sbjct: 344 KSVED 348
>PPCK_COREF (Q8FM16) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 612 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Frame = -3 Query: 529 FCQGPVMDPFEHDPEKEGHYREALSMDMELTDDARVEAEM-------KAALDDYQVIGSD 371 FC GP+ DP +P+ + ++LTD A V M K ALD GS Sbjct: 131 FCMGPITDP---EPK----------LGVQLTDSAYVVMSMRIMTRMGKDALDKIGENGSF 177 Query: 370 LSIIPSCGSLAEDPSQLTRWIIGDEK 293 + + S G+ E+ + W D K Sbjct: 178 VRCLHSVGAPLEEGQEDVAWPCNDTK 203
>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)| (Ataxin-2-related protein) Length = 1075 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 2/102 (1%) Frame = -3 Query: 613 ADVDNGWYSGALLYDQDENSGAYKHYSEFCQGPVMDPFEHDPEKEGHYRE--ALSMDMEL 440 +D+ NGW + +EN G Y + P E D +E RE A + E+ Sbjct: 245 SDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTV-PLEKDNSEEFRQRELRAAQLAREI 303 Query: 439 TDDARVEAEMKAALDDYQVIGSDLSIIPSCGSLAEDPSQLTR 314 + + DD + S + GS E PS +R Sbjct: 304 ESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLASR 345 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,244,742 Number of Sequences: 219361 Number of extensions: 2025105 Number of successful extensions: 6043 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5867 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6041 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)