ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30o21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479718.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3148 Score = 266 bits (134), Expect = 9e-68 Identities = 305/362 (84%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 2732 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 2673 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 2672 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 2613 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 2612 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 2553 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactggaccctggcaaaattcggagtaatgt 542 |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| Sbjct: 2552 ttctcgggatcgtgctcgaggggatccatgactgagccctggcaaaattcagagtaatgt 2493 Query: 543 ttataagcaccgctgttctcatcttgatcgtatagcagtgctccactgtaccagccattg 602 |||||||| |||||||| ||||||||||| |||| ||||| ||||| ||||||||||| Sbjct: 2492 ttataagccccgctgttttcatcttgatcatatatcagtgttccaccataccagccattc 2433 Query: 603 tctacatccgccgtcgtgaacgctagataccttctgaagttgtcctcctcgcatgaatct 662 ||||| ||||| || ||||| || |||||||||||||| |||||||||||||||| |||| Sbjct: 2432 tctacgtccgctgttgtgaatgcaagataccttctgaaattgtcctcctcgcatgtatct 2373 Query: 663 gc 664 || Sbjct: 2372 gc 2371
>ref|XM_507089.1| PREDICTED Oryza sativa (japonica cultivar-group), P0007D08.10-1 mRNA Length = 3205 Score = 266 bits (134), Expect = 9e-68 Identities = 305/362 (84%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 2735 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 2676 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 2675 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 2616 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 2615 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 2556 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactggaccctggcaaaattcggagtaatgt 542 |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| Sbjct: 2555 ttctcgggatcgtgctcgaggggatccatgactgagccctggcaaaattcagagtaatgt 2496 Query: 543 ttataagcaccgctgttctcatcttgatcgtatagcagtgctccactgtaccagccattg 602 |||||||| |||||||| ||||||||||| |||| ||||| ||||| ||||||||||| Sbjct: 2495 ttataagccccgctgttttcatcttgatcatatatcagtgttccaccataccagccattc 2436 Query: 603 tctacatccgccgtcgtgaacgctagataccttctgaagttgtcctcctcgcatgaatct 662 ||||| ||||| || ||||| || |||||||||||||| |||||||||||||||| |||| Sbjct: 2435 tctacgtccgctgttgtgaatgcaagataccttctgaaattgtcctcctcgcatgtatct 2376 Query: 663 gc 664 || Sbjct: 2375 gc 2374
>ref|XM_479719.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1221 Score = 266 bits (134), Expect = 9e-68 Identities = 305/362 (84%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 1193 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 1134 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 1133 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 1074 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 1073 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 1014 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactggaccctggcaaaattcggagtaatgt 542 |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| Sbjct: 1013 ttctcgggatcgtgctcgaggggatccatgactgagccctggcaaaattcagagtaatgt 954 Query: 543 ttataagcaccgctgttctcatcttgatcgtatagcagtgctccactgtaccagccattg 602 |||||||| |||||||| ||||||||||| |||| ||||| ||||| ||||||||||| Sbjct: 953 ttataagccccgctgttttcatcttgatcatatatcagtgttccaccataccagccattc 894 Query: 603 tctacatccgccgtcgtgaacgctagataccttctgaagttgtcctcctcgcatgaatct 662 ||||| ||||| || ||||| || |||||||||||||| |||||||||||||||| |||| Sbjct: 893 tctacgtccgctgttgtgaatgcaagataccttctgaaattgtcctcctcgcatgtatct 834 Query: 663 gc 664 || Sbjct: 833 gc 832
>dbj|AK121887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105A05, full insert sequence Length = 3205 Score = 266 bits (134), Expect = 9e-68 Identities = 305/362 (84%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 2735 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 2676 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 2675 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 2616 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 2615 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 2556 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactggaccctggcaaaattcggagtaatgt 542 |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| Sbjct: 2555 ttctcgggatcgtgctcgaggggatccatgactgagccctggcaaaattcagagtaatgt 2496 Query: 543 ttataagcaccgctgttctcatcttgatcgtatagcagtgctccactgtaccagccattg 602 |||||||| |||||||| ||||||||||| |||| ||||| ||||| ||||||||||| Sbjct: 2495 ttataagccccgctgttttcatcttgatcatatatcagtgttccaccataccagccattc 2436 Query: 603 tctacatccgccgtcgtgaacgctagataccttctgaagttgtcctcctcgcatgaatct 662 ||||| ||||| || ||||| || |||||||||||||| |||||||||||||||| |||| Sbjct: 2435 tctacgtccgctgttgtgaatgcaagataccttctgaaattgtcctcctcgcatgtatct 2376 Query: 663 gc 664 || Sbjct: 2375 gc 2374
>dbj|AK062002.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D06, full insert sequence Length = 1555 Score = 266 bits (134), Expect = 9e-68 Identities = 305/362 (84%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 1162 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 1103 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 1102 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 1043 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 1042 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 983 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactggaccctggcaaaattcggagtaatgt 542 |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| Sbjct: 982 ttctcgggatcgtgctcgaggggatccatgactgagccctggcaaaattcagagtaatgt 923 Query: 543 ttataagcaccgctgttctcatcttgatcgtatagcagtgctccactgtaccagccattg 602 |||||||| |||||||| ||||||||||| |||| ||||| ||||| ||||||||||| Sbjct: 922 ttataagccccgctgttttcatcttgatcatatatcagtgttccaccataccagccattc 863 Query: 603 tctacatccgccgtcgtgaacgctagataccttctgaagttgtcctcctcgcatgaatct 662 ||||| ||||| || ||||| || |||||||||||||| |||||||||||||||| |||| Sbjct: 862 tctacgtccgctgttgtgaatgcaagataccttctgaaattgtcctcctcgcatgtatct 803 Query: 663 gc 664 || Sbjct: 802 gc 801
>dbj|AK120484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K21, full insert sequence Length = 3148 Score = 258 bits (130), Expect = 2e-65 Identities = 304/362 (83%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 2732 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 2673 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 2672 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 2613 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 2612 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 2553 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactggaccctggcaaaattcggagtaatgt 542 |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| Sbjct: 2552 ttctcgggatcgtgctcgaggggatccatgactgagccctggcaaaattcagagtaatgt 2493 Query: 543 ttataagcaccgctgttctcatcttgatcgtatagcagtgctccactgtaccagccattg 602 |||||||| |||||||| ||||||||||| |||| ||||| ||||| ||||||||||| Sbjct: 2492 ttataagccccgctgttttcatcttgatcatatatcagtgttccaccataccagccattc 2433 Query: 603 tctacatccgccgtcgtgaacgctagataccttctgaagttgtcctcctcgcatgaatct 662 | ||| ||||| || ||||| || |||||||||||||| |||||||||||||||| |||| Sbjct: 2432 tttacgtccgctgttgtgaatgcaagataccttctgaaattgtcctcctcgcatgtatct 2373 Query: 663 gc 664 || Sbjct: 2372 gc 2371
>gb|AY106959.1| Zea mays PCO132352 mRNA sequence Length = 841 Score = 131 bits (66), Expect = 3e-27 Identities = 126/146 (86%) Strand = Plus / Minus Query: 289 gcagcttctcgtccccaatgatccaccttgtcagctggcttgggtcctcagcgagggagc 348 ||||| |||| || |||||||||||||| ||||||||||| |||||||| ||||| | | Sbjct: 613 gcagcctctcatctccaatgatccacctcgtcagctggctcgggtcctctgcgagtgctc 554 Query: 349 cgcacgacgggatgatgctcaggtctgaacctatcacctggtagtcgtccagagccgctt 408 ||||||| ||||||||||||||||| || ||||| ||||||||||| ||||| || || | Sbjct: 553 cgcacgaagggatgatgctcaggtccgaccctatgacctggtagtcatccagcgcggcct 494 Query: 409 tcatttctgcctccactcgtgcatcg 434 |||||| |||||||| ||||||||| Sbjct: 493 gcatttcggcctccacccgtgcatcg 468 Score = 121 bits (61), Expect = 3e-24 Identities = 172/209 (82%) Strand = Plus / Minus Query: 450 tccatgctaagggcctccctgtagtgcccttctttctcggggtcgtgctcgaaaggatcc 509 |||| ||||||||||||| |||||||| |||||||| ||||| ||||| || |||||| Sbjct: 461 tccacgctaagggcctccgcgtagtgccgctctttctcagggtcatgctcaaagggatcc 402 Query: 510 atgactggaccctggcaaaattcggagtaatgtttataagcaccgctgttctcatcttga 569 ||||| | |||||||| | || || || || | ||||| |||||||| |||||| | Sbjct: 401 atgacagctccctggcagagctcagaatagtgcctgtaagccccgctgttttcatctcgg 342 Query: 570 tcgtatagcagtgctccactgtaccagccattgtctacatccgccgtcgtgaacgctaga 629 || |||||||||| ||| | ||||||||||| ||||||||||| |||||||| || || Sbjct: 341 tcatatagcagtgttccgccataccagccattctctacatccgctgtcgtgaatgcaagg 282 Query: 630 taccttctgaagttgtcctcctcgcatga 658 ||||||||||| |||||||||||||||| Sbjct: 281 taccttctgaaaatgtcctcctcgcatga 253
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 117 bits (59), Expect = 5e-23 Identities = 101/115 (87%) Strand = Plus / Minus Query: 520 cctggcaaaattcggagtaatgtttataagcaccgctgttctcatcttgatcgtatagca 579 ||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||| || Sbjct: 451090 cctggcaaaattcagagtaatgtttataagccccgctgttttcatcttgatcatatatca 451031 Query: 580 gtgctccactgtaccagccattgtctacatccgccgtcgtgaacgctagatacct 634 ||| ||||| ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 451030 gtgttccaccataccagccattctctacgtccgctgttgtgaatgcaagatacct 450976 Score = 115 bits (58), Expect = 2e-22 Identities = 175/214 (81%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 451410 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 451351 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 451350 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 451291 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 451290 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 451231 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactg 516 |||||||| |||||||||| ||||||||||||| Sbjct: 451230 ttctcgggatcgtgctcgaggggatccatgactg 451197 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 631 accttctgaagttgtcctcctcgcatgaatctgc 664 |||||||||| |||||||||||||||| |||||| Sbjct: 450896 accttctgaaattgtcctcctcgcatgtatctgc 450863
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 117 bits (59), Expect = 5e-23 Identities = 101/115 (87%) Strand = Plus / Minus Query: 520 cctggcaaaattcggagtaatgtttataagcaccgctgttctcatcttgatcgtatagca 579 ||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||| || Sbjct: 41050 cctggcaaaattcagagtaatgtttataagccccgctgttttcatcttgatcatatatca 40991 Query: 580 gtgctccactgtaccagccattgtctacatccgccgtcgtgaacgctagatacct 634 ||| ||||| ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct: 40990 gtgttccaccataccagccattctctacgtccgctgttgtgaatgcaagatacct 40936 Score = 115 bits (58), Expect = 2e-22 Identities = 175/214 (81%) Strand = Plus / Minus Query: 303 ccaatgatccaccttgtcagctggcttgggtcctcagcgagggagccgcacgacgggatg 362 |||||||||||||| |||||||||||||| || |||||||| || || || || || || Sbjct: 41370 ccaatgatccacctcgtcagctggcttggatcttcagcgagcgatccacaagatggaata 41311 Query: 363 atgctcaggtctgaacctatcacctggtagtcgtccagagccgctttcatttctgcctcc 422 ||||| |||||||||||||| | |||||| |||||||| || |||| ||||||||| || Sbjct: 41310 atgctgaggtctgaacctattatctggtaatcgtccagggcagcttgcatttctgcttct 41251 Query: 423 actcgtgcatcgtccgtgagttccatgtccatgctaagggcctccctgtagtgcccttct 482 || |||||| || |||| || || |||| ||| ||||||||| || ||| |||| Sbjct: 41250 accgttgcatcatcagtgatgtcaatatccacgctgagggcctccgcataatgcatttct 41191 Query: 483 ttctcggggtcgtgctcgaaaggatccatgactg 516 |||||||| |||||||||| ||||||||||||| Sbjct: 41190 ttctcgggatcgtgctcgaggggatccatgactg 41157 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 631 accttctgaagttgtcctcctcgcatgaatctgc 664 |||||||||| |||||||||||||||| |||||| Sbjct: 40856 accttctgaaattgtcctcctcgcatgtatctgc 40823
>ref|XM_467796.1| Oryza sativa (japonica cultivar-group), mRNA Length = 258 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 cgcatgaatctgccgaggagg 672 ||||||||||||||||||||| Sbjct: 85 cgcatgaatctgccgaggagg 105
>gb|AC113589.13| Mus musculus chromosome 9, clone RP23-257A19, complete sequence Length = 213826 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 tattatacatacaccttctca 48 ||||||||||||||||||||| Sbjct: 66060 tattatacatacaccttctca 66080
>gb|AC108211.3| Homo sapiens BAC clone RP11-511I14 from 4, complete sequence Length = 222457 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 172 gaataccttctttttgtacat 192 ||||||||||||||||||||| Sbjct: 79547 gaataccttctttttgtacat 79527
>gb|AC012464.25| Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173765 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 cctctctttgtccagtcctcc 99 ||||||||||||||||||||| Sbjct: 99106 cctctctttgtccagtcctcc 99126
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 cgcatgaatctgccgaggagg 672 ||||||||||||||||||||| Sbjct: 31461515 cgcatgaatctgccgaggagg 31461535
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 cgcatgaatctgccgaggagg 672 ||||||||||||||||||||| Sbjct: 96912 cgcatgaatctgccgaggagg 96932
>emb|Z78542.1|CEF20D1 Caenorhabditis elegans Cosmid F20D1, complete sequence Length = 40600 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ttctttttgtacatttaagc 198 |||||||||||||||||||| Sbjct: 28973 ttctttttgtacatttaagc 28954
>gb|AC122389.2| Mus musculus BAC clone RP24-80N23 from 16, complete sequence Length = 217046 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 aaaccaacaattgacaaatg 237 |||||||||||||||||||| Sbjct: 134090 aaaccaacaattgacaaatg 134071
>ref|XM_651421.1| Entamoeba histolytica HM-1:IMSS acid sphingomyelinase-like phosphodiesterase (11.t00069) partial mRNA Length = 1278 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 82 ctctttgtccagtcctcctatatccatc 109 |||||||||||||| | ||||||||||| Sbjct: 667 ctctttgtccagtctttctatatccatc 640
>gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, complete sequence Length = 121142 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 aaaccaacaattgacaaatg 237 |||||||||||||||||||| Sbjct: 23927 aaaccaacaattgacaaatg 23908
>gb|AE014817.1| Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence Length = 254449 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 atatacacacgatgaaaccaacaa 227 |||||||||||| ||||||||||| Sbjct: 190536 atatacacacgaggaaaccaacaa 190513
>emb|AL161912.15| Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a novel pseudogene and a novel gene, complete sequence Length = 102624 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 aaaccaacaattgacaaatg 237 |||||||||||||||||||| Sbjct: 5135 aaaccaacaattgacaaatg 5116
>gb|AC131231.10| Mus musculus chromosome 19, clone RP24-395L19, complete sequence Length = 181700 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gacgggatgatgctcaggtc 373 |||||||||||||||||||| Sbjct: 55709 gacgggatgatgctcaggtc 55728 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,959,775 Number of Sequences: 3902068 Number of extensions: 4959775 Number of successful extensions: 81894 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81787 Number of HSP's gapped (non-prelim): 107 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
