ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 305 1e-79
2dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic D... 305 1e-79
3dbj|AK120599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 1e-79
4dbj|AK103578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 1e-79
5gb|AY107878.1| Zea mays PCO076796 mRNA sequence 86 2e-13
6gb|AC026424.5| Homo sapiens chromosome 5 clone CTD-2174D2, compl... 44 0.57
7gb|AY273797.1| Homo sapiens polymerase (DNA directed) kappa (POL... 44 0.57
8gb|AC010245.4|AC010245 Homo sapiens chromosome 5 clone CTC-366B1... 44 0.57
9gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Can... 42 2.2
10gb|AC168276.3| Mus musculus BAC RP24-485I12 (Roswell Park Cance... 42 2.2
11gb|BC044030.1| Xenopus laevis tubulin beta-2 chain, mRNA (cDNA c... 42 2.2
12gb|AC066590.5| Homo sapiens chromosome 3 clone RP11-324K11 map 3... 42 2.2
13gb|AC161211.21| Mus musculus chromosome 7, clone RP23-74O12, com... 42 2.2
14emb|X15798.1|XLTUBBII Xenopus laevis mRNA for nervous system spe... 42 2.2
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16gb|AC114582.12| Mus musculus chromosome 7, clone RP23-192M19, co... 42 2.2
17gb|AC018730.8| Homo sapiens BAC clone RP11-13J10 from 2, complet... 42 2.2
18gb|AC097231.3| Sus scrofa clone RP44-504L18, complete sequence 42 2.2
19dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
20dbj|AP003755.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
21gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.2
22gb|AC114667.12| Mus musculus chromosome 1, clone RP24-175L10, co... 40 8.9
23gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, comp... 40 8.9
24emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chro... 40 8.9
25emb|AL512643.9| Human DNA sequence from clone RP11-265B7 on chro... 40 8.9
26gb|DQ439977.1| Xenopus laevis silencing mediator for retinoid an... 40 8.9
27emb|CR759889.5| Zebrafish DNA sequence from clone DKEY-172F14 in... 40 8.9
28gb|AC135611.25| Pan troglodytes clone rp43-14h17, complete sequence 40 8.9
29gb|AC118990.2| Homo sapiens chromosome 1 clone RP11-243K11, comp... 40 8.9
30gb|AC020644.7| Homo sapiens chromosome 10 clone RP11-552O21, com... 40 8.9
31gb|AC018980.10| Homo sapiens chromosome 10 clone RP11-476F14, co... 40 8.9
32gb|AC090196.5| Homo sapiens chromosome 8, clone RP11-766A10, com... 40 8.9
33gb|AC016830.5| Homo sapiens chromosome 22 clone b81b3 map 22q11,... 40 8.9
34gb|AC016027.15| Homo sapiens chromosome 22 clone b476c20 map 22q... 40 8.9
35gb|AC026307.16|AC026307 Homo sapiens 12 BAC RP11-753N8 (Roswell ... 40 8.9
36emb|BX248331.8| Zebrafish DNA sequence from clone CH211-236D3 in... 40 8.9
37gb|AC096663.1| Homo sapiens BAC clone RP11-103L19 from 2, comple... 40 8.9
38emb|AL136297.3|CNS01DW1 Human chromosome 14 DNA sequence BAC R-6... 40 8.9
39gb|AC006443.1|AC006443 Homo sapiens chromosome 9, clone hRPK.49... 40 8.9
40dbj|AP003177.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.9
41dbj|AP003055.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.9
42gb|AC005357.1|AC005357 Homo sapiens chromosome 19, cosmid F16593... 40 8.9
43dbj|AP006089.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.9
44dbj|AP004531.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 8.9
45emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2... 40 8.9
46dbj|AP000344.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 40 8.9
47dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  305 bits (154), Expect = 1e-79
 Identities = 386/465 (83%), Gaps = 9/465 (1%)
 Strand = Plus / Minus

                                                                            
Query: 194      aaatcaccatggaggggtggaaccttttctcgccgaaggagaccgtgatcccaagcctgg 253
                ||||||||| |||||||||||||| | ||| | ||| ||||| ||||||||||||| |||
Sbjct: 17595579 aaatcaccagggaggggtggaaccctgtcttgtcgatggagatcgtgatcccaagcttgg 17595520

                                                                            
Query: 254      gtcagttgaaaaccttgtctttggggtgcctgcagatggcgtcgaccctctgtaacttgc 313
                |||  ||||||||||||||||||| |||  ||||||||| || |  |||||||| || ||
Sbjct: 17595519 gtctcttgaaaaccttgtctttggagtggttgcagatggggttgtacctctgtagctcgc 17595460

                                                                            
Query: 314      acggagagactcatcaatggtttgtgtggattttgcgatagcattcctcacaaacttttg 373
                 ||||| ||||||||||||||  | | ||| ||||| || |||||||| |||||||| ||
Sbjct: 17595459 tcggagcgactcatcaatggtacgagaggactttgcaatggcattcctaacaaacttctg 17595400

                                                                            
Query: 374      tgctgcaggagacagattcctggggcttgcactgcctcctctcacaggcgatggtagcgg 433
                |||||||||||| |   |||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 17595399 tgctgcaggagagaaggtccttgggcttgcacttcctcccctcacaggcgatggtagcgg 17595340

                                                                            
Query: 434      tggcttgtgaaacatatgtgttcgtgcctttatcttcttcgcggcgtccctggacagcag 493
                ||||||||| ||||| |  || ||  ||||||||||| | || || ||||| ||||||||
Sbjct: 17595339 tggcttgtggaacattttagtgcgctcctttatcttccttgctgcatcccttgacagcag 17595280

                                                                            
Query: 494      gtgtgccttcacatctcgaacaggtggaggtgggatcttgaaatgtgacctctcactacc 553
                 |||||||| ||||| ||| |||| |||||||||||||||||||| | ||| ||||| ||
Sbjct: 17595279 atgtgcctttacatcccgagcaggcggaggtgggatcttgaaatgcgccctatcacttcc 17595220

                                                                            
Query: 554      ccca---------ggtgtctcatcaggatccaacctcagtggtgttncatcgatatcgcc 604
                ||||         |||||||| || || ||||  |||||||||||| |||| || || ||
Sbjct: 17595219 cccagaaccacccggtgtctcctctgggtccagtctcagtggtgttccatcaatctcacc 17595160

                                                             
Query: 605      ccatgtcatgaacggggactcatcagcgccaggtgctggcgatgg 649
                ||||||||||||||| ||||||||  |||||||||||||||||||
Sbjct: 17595159 ccatgtcatgaacggtgactcatccacgccaggtgctggcgatgg 17595115
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>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score =  305 bits (154), Expect = 1e-79
 Identities = 386/465 (83%), Gaps = 9/465 (1%)
 Strand = Plus / Minus

                                                                         
Query: 194   aaatcaccatggaggggtggaaccttttctcgccgaaggagaccgtgatcccaagcctgg 253
             ||||||||| |||||||||||||| | ||| | ||| ||||| ||||||||||||| |||
Sbjct: 21927 aaatcaccagggaggggtggaaccctgtcttgtcgatggagatcgtgatcccaagcttgg 21868

                                                                         
Query: 254   gtcagttgaaaaccttgtctttggggtgcctgcagatggcgtcgaccctctgtaacttgc 313
             |||  ||||||||||||||||||| |||  ||||||||| || |  |||||||| || ||
Sbjct: 21867 gtctcttgaaaaccttgtctttggagtggttgcagatggggttgtacctctgtagctcgc 21808

                                                                         
Query: 314   acggagagactcatcaatggtttgtgtggattttgcgatagcattcctcacaaacttttg 373
              ||||| ||||||||||||||  | | ||| ||||| || |||||||| |||||||| ||
Sbjct: 21807 tcggagcgactcatcaatggtacgagaggactttgcaatggcattcctaacaaacttctg 21748

                                                                         
Query: 374   tgctgcaggagacagattcctggggcttgcactgcctcctctcacaggcgatggtagcgg 433
             |||||||||||| |   |||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 21747 tgctgcaggagagaaggtccttgggcttgcacttcctcccctcacaggcgatggtagcgg 21688

                                                                         
Query: 434   tggcttgtgaaacatatgtgttcgtgcctttatcttcttcgcggcgtccctggacagcag 493
             ||||||||| ||||| |  || ||  ||||||||||| | || || ||||| ||||||||
Sbjct: 21687 tggcttgtggaacattttagtgcgctcctttatcttccttgctgcatcccttgacagcag 21628

                                                                         
Query: 494   gtgtgccttcacatctcgaacaggtggaggtgggatcttgaaatgtgacctctcactacc 553
              |||||||| ||||| ||| |||| |||||||||||||||||||| | ||| ||||| ||
Sbjct: 21627 atgtgcctttacatcccgagcaggcggaggtgggatcttgaaatgcgccctatcacttcc 21568

                                                                         
Query: 554   ccca---------ggtgtctcatcaggatccaacctcagtggtgttncatcgatatcgcc 604
             ||||         |||||||| || || ||||  |||||||||||| |||| || || ||
Sbjct: 21567 cccagaaccacccggtgtctcctctgggtccagtctcagtggtgttccatcaatctcacc 21508

                                                          
Query: 605   ccatgtcatgaacggggactcatcagcgccaggtgctggcgatgg 649
             ||||||||||||||| ||||||||  |||||||||||||||||||
Sbjct: 21507 ccatgtcatgaacggtgactcatccacgccaggtgctggcgatgg 21463
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>dbj|AK120599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149F09, full
            insert sequence
          Length = 1879

 Score =  305 bits (154), Expect = 1e-79
 Identities = 386/465 (83%), Gaps = 9/465 (1%)
 Strand = Plus / Minus

                                                                        
Query: 194  aaatcaccatggaggggtggaaccttttctcgccgaaggagaccgtgatcccaagcctgg 253
            ||||||||| |||||||||||||| | ||| | ||| ||||| ||||||||||||| |||
Sbjct: 1668 aaatcaccagggaggggtggaaccctgtcttgtcgatggagatcgtgatcccaagcttgg 1609

                                                                        
Query: 254  gtcagttgaaaaccttgtctttggggtgcctgcagatggcgtcgaccctctgtaacttgc 313
            |||  ||||||||||||||||||| |||  ||||||||| || |  |||||||| || ||
Sbjct: 1608 gtctcttgaaaaccttgtctttggagtggttgcagatggggttgtacctctgtagctcgc 1549

                                                                        
Query: 314  acggagagactcatcaatggtttgtgtggattttgcgatagcattcctcacaaacttttg 373
             ||||| ||||||||||||||  | | ||| ||||| || |||||||| |||||||| ||
Sbjct: 1548 tcggagcgactcatcaatggtacgagaggactttgcaatggcattcctaacaaacttctg 1489

                                                                        
Query: 374  tgctgcaggagacagattcctggggcttgcactgcctcctctcacaggcgatggtagcgg 433
            |||||||||||| |   |||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1488 tgctgcaggagagaaggtccttgggcttgcacttcctcccctcacaggcgatggtagcgg 1429

                                                                        
Query: 434  tggcttgtgaaacatatgtgttcgtgcctttatcttcttcgcggcgtccctggacagcag 493
            ||||||||| ||||| |  || ||  ||||||||||| | || || ||||| ||||||||
Sbjct: 1428 tggcttgtggaacattttagtgcgctcctttatcttccttgctgcatcccttgacagcag 1369

                                                                        
Query: 494  gtgtgccttcacatctcgaacaggtggaggtgggatcttgaaatgtgacctctcactacc 553
             |||||||| ||||| ||| |||| |||||||||||||||||||| | ||| ||||| ||
Sbjct: 1368 atgtgcctttacatcccgagcaggcggaggtgggatcttgaaatgcgccctatcacttcc 1309

                                                                        
Query: 554  ccca---------ggtgtctcatcaggatccaacctcagtggtgttncatcgatatcgcc 604
            ||||         |||||||| || || ||||  |||||||||||| |||| || || ||
Sbjct: 1308 cccagaaccacccggtgtctcctctgggtccagtctcagtggtgttccatcaatctcacc 1249

                                                         
Query: 605  ccatgtcatgaacggggactcatcagcgccaggtgctggcgatgg 649
            ||||||||||||||| ||||||||  |||||||||||||||||||
Sbjct: 1248 ccatgtcatgaacggtgactcatccacgccaggtgctggcgatgg 1204
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>dbj|AK103578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132P14, full
            insert sequence
          Length = 2166

 Score =  305 bits (154), Expect = 1e-79
 Identities = 386/465 (83%), Gaps = 9/465 (1%)
 Strand = Plus / Minus

                                                                        
Query: 194  aaatcaccatggaggggtggaaccttttctcgccgaaggagaccgtgatcccaagcctgg 253
            ||||||||| |||||||||||||| | ||| | ||| ||||| ||||||||||||| |||
Sbjct: 1640 aaatcaccagggaggggtggaaccctgtcttgtcgatggagatcgtgatcccaagcttgg 1581

                                                                        
Query: 254  gtcagttgaaaaccttgtctttggggtgcctgcagatggcgtcgaccctctgtaacttgc 313
            |||  ||||||||||||||||||| |||  ||||||||| || |  |||||||| || ||
Sbjct: 1580 gtctcttgaaaaccttgtctttggagtggttgcagatggggttgtacctctgtagctcgc 1521

                                                                        
Query: 314  acggagagactcatcaatggtttgtgtggattttgcgatagcattcctcacaaacttttg 373
             ||||| ||||||||||||||  | | ||| ||||| || |||||||| |||||||| ||
Sbjct: 1520 tcggagcgactcatcaatggtacgagaggactttgcaatggcattcctaacaaacttctg 1461

                                                                        
Query: 374  tgctgcaggagacagattcctggggcttgcactgcctcctctcacaggcgatggtagcgg 433
            |||||||||||| |   |||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1460 tgctgcaggagagaaggtccttgggcttgcacttcctcccctcacaggcgatggtagcgg 1401

                                                                        
Query: 434  tggcttgtgaaacatatgtgttcgtgcctttatcttcttcgcggcgtccctggacagcag 493
            ||||||||| ||||| |  || ||  ||||||||||| | || || ||||| ||||||||
Sbjct: 1400 tggcttgtggaacattttagtgcgctcctttatcttccttgctgcatcccttgacagcag 1341

                                                                        
Query: 494  gtgtgccttcacatctcgaacaggtggaggtgggatcttgaaatgtgacctctcactacc 553
             |||||||| ||||| ||| |||| |||||||||||||||||||| | ||| ||||| ||
Sbjct: 1340 atgtgcctttacatcccgagcaggcggaggtgggatcttgaaatgcgccctatcacttcc 1281

                                                                        
Query: 554  ccca---------ggtgtctcatcaggatccaacctcagtggtgttncatcgatatcgcc 604
            ||||         |||||||| || || ||||  |||||||||||| |||| || || ||
Sbjct: 1280 cccagaaccacccggtgtctcctctgggtccagtctcagtggtgttccatcaatctcacc 1221

                                                         
Query: 605  ccatgtcatgaacggggactcatcagcgccaggtgctggcgatgg 649
            ||||||||||||||| ||||||||  |||||||||||||||||||
Sbjct: 1220 ccatgtcatgaacggtgactcatccacgccaggtgctggcgatgg 1176
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>gb|AY107878.1| Zea mays PCO076796 mRNA sequence
          Length = 928

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 144/178 (80%)
 Strand = Plus / Minus

                                                                       
Query: 474 gcggcgtccctggacagcaggtgtgccttcacatctcgaacaggtggaggtgggatcttg 533
           ||||||||||| || |||||||| ||||| ||||| ||| |||| || ||||| ||||||
Sbjct: 504 gcggcgtccctcgaaagcaggtgcgccttgacatcgcgagcaggaggtggtggcatcttg 445

                                                                       
Query: 534 aaatgtgacctctcactacccccaggtgtctcatcaggatccaacctcagtggtgttnca 593
           ||||| |  ||||| || || || || ||||| || || |||| |||||| |||||| | 
Sbjct: 444 aaatgcgctctctcgctgccgcccggcgtctcgtcggggtccagcctcagcggtgttccg 385

                                                                     
Query: 594 tcgatatcgccccatgtcatgaacggggactcatcagcgccaggtgctggcgatggtg 651
           ||||| || ||||| ||||||||||| ||||| ||  |||| ||||| ||||| ||||
Sbjct: 384 tcgatctcaccccacgtcatgaacggcgactcgtccacgccgggtgccggcgacggtg 327



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 259 ttgaaaaccttgtctttggggtgcctgcagatggcgtcgaccctctgtaacttgcacgga 318
           |||||||||||| ||| || ||||  ||||| || ||||| |||||||| ||||||||||
Sbjct: 728 ttgaaaaccttgacttgggagtgctcgcagacggggtcgagcctctgtagcttgcacgga 669

                          
Query: 319 gagactcatcaatgg 333
           |||| || |||||||
Sbjct: 668 gagattcgtcaatgg 654
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>gb|AC026424.5| Homo sapiens chromosome 5 clone CTD-2174D2, complete sequence
          Length = 123003

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 35    ctgagggagccagccatgcaaa 56
             ||||||||||||||||||||||
Sbjct: 53654 ctgagggagccagccatgcaaa 53633
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>gb|AY273797.1| Homo sapiens polymerase (DNA directed) kappa (POLK) gene, complete cds
          Length = 90905

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    ctgagggagccagccatgcaaa 56
             ||||||||||||||||||||||
Sbjct: 75797 ctgagggagccagccatgcaaa 75818
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>gb|AC010245.4|AC010245 Homo sapiens chromosome 5 clone CTC-366B18, complete sequence
          Length = 117840

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    ctgagggagccagccatgcaaa 56
             ||||||||||||||||||||||
Sbjct: 19812 ctgagggagccagccatgcaaa 19833
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>gb|AC168275.4| Mus musculus 10 BAC RP23-350O21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 188458

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    ctgagggagccagccatgcaa 55
             |||||||||||||||||||||
Sbjct: 29912 ctgagggagccagccatgcaa 29932
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>gb|AC168276.3| Mus musculus  BAC RP24-485I12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186675

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 35     ctgagggagccagccatgcaa 55
              |||||||||||||||||||||
Sbjct: 143815 ctgagggagccagccatgcaa 143835
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>gb|BC044030.1| Xenopus laevis tubulin beta-2 chain, mRNA (cDNA clone MGC:53436
           IMAGE:5571885), complete cds
          Length = 1768

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 251 tgggtcagttgaaaaccttgt 271
           |||||||||||||||||||||
Sbjct: 523 tgggtcagttgaaaaccttgt 503
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>gb|AC066590.5| Homo sapiens chromosome 3 clone RP11-324K11 map 3p, complete sequence
          Length = 185895

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     aaatgaagaatagtttaatga 74
              |||||||||||||||||||||
Sbjct: 105468 aaatgaagaatagtttaatga 105448
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>gb|AC161211.21| Mus musculus chromosome 7, clone RP23-74O12, complete sequence
          Length = 188863

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   ctgaaaaaactaccatcattt 122
             |||||||||||||||||||||
Sbjct: 66305 ctgaaaaaactaccatcattt 66285
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>emb|X15798.1|XLTUBBII Xenopus laevis mRNA for nervous system specific,class II
           beta-tubulin isotype
          Length = 1744

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 251 tgggtcagttgaaaaccttgt 271
           |||||||||||||||||||||
Sbjct: 498 tgggtcagttgaaaaccttgt 478
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 487     acagcaggtgtgccttcacat 507
               |||||||||||||||||||||
Sbjct: 9050091 acagcaggtgtgccttcacat 9050111
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>gb|AC114582.12| Mus musculus chromosome 7, clone RP23-192M19, complete sequence
          Length = 201839

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 383    agacagattcctggggcttgc 403
              |||||||||||||||||||||
Sbjct: 159384 agacagattcctggggcttgc 159404
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>gb|AC018730.8| Homo sapiens BAC clone RP11-13J10 from 2, complete sequence
          Length = 154728

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    ggagacagattcctggggctt 401
              |||||||||||||||||||||
Sbjct: 146502 ggagacagattcctggggctt 146482
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>gb|AC097231.3| Sus scrofa clone RP44-504L18, complete sequence
          Length = 161823

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     atattttagtaagacctttgc 21
             |||||||||||||||||||||
Sbjct: 46568 atattttagtaagacctttgc 46548
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>dbj|AP003756.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1370_E02
          Length = 128326

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 487   acagcaggtgtgccttcacat 507
             |||||||||||||||||||||
Sbjct: 40498 acagcaggtgtgccttcacat 40518
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>dbj|AP003755.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1354_H07
          Length = 157974

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 487    acagcaggtgtgccttcacat 507
              |||||||||||||||||||||
Sbjct: 101534 acagcaggtgtgccttcacat 101554
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 628     cagcgccaggtgctggcgatg 648
               |||||||||||||||||||||
Sbjct: 2348989 cagcgccaggtgctggcgatg 2348969
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>gb|AC114667.12| Mus musculus chromosome 1, clone RP24-175L10, complete sequence
          Length = 171306

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 383    agacagattcctggggcttg 402
              ||||||||||||||||||||
Sbjct: 116390 agacagattcctggggcttg 116409
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>gb|AC163440.3| Mus musculus chromosome 1, clone RP23-445K8, complete sequence
          Length = 194714

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    agacagattcctggggcttg 402
              ||||||||||||||||||||
Sbjct: 170308 agacagattcctggggcttg 170289
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>emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chromosome X, complete
            sequence
          Length = 112366

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  ttgaaaaccttgtctttggg 278
            ||||||||||||||||||||
Sbjct: 4498 ttgaaaaccttgtctttggg 4517
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>emb|AL512643.9| Human DNA sequence from clone RP11-265B7 on chromosome 9 Contains the 5'
              end of a novel gene (FLJ25416), the 3' end of a novel gene
              and a novel gene, complete sequence
          Length = 116806

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     catgcaaatgaagaatagtt 68
              ||||||||||||||||||||
Sbjct: 114282 catgcaaatgaagaatagtt 114301
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>gb|DQ439977.1| Xenopus laevis silencing mediator for retinoid and thyroid hormone
           receptor (SMRT) mRNA, complete cds
          Length = 7374

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  agatttccaagctgaaaaaa 110
           ||||||||||||||||||||
Sbjct: 560 agatttccaagctgaaaaaa 579
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>emb|CR759889.5| Zebrafish DNA sequence from clone DKEY-172F14 in linkage group 5,
             complete sequence
          Length = 129171

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    gggagccagccatgcaaatg 58
             ||||||||||||||||||||
Sbjct: 27340 gggagccagccatgcaaatg 27359
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>gb|AC135611.25| Pan troglodytes clone rp43-14h17, complete sequence
          Length = 215721

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 623    ctcatcagcgccaggtgctg 642
              ||||||||||||||||||||
Sbjct: 146094 ctcatcagcgccaggtgctg 146113
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>gb|AC118990.2| Homo sapiens chromosome 1 clone RP11-243K11, complete sequence
          Length = 48385

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    gagggagccagccatgcaaa 56
             ||||||||||||||||||||
Sbjct: 35827 gagggagccagccatgcaaa 35808
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>gb|AC020644.7| Homo sapiens chromosome 10 clone RP11-552O21, complete sequence
          Length = 197720

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 165    ctggatatatataacattgggatttact 192
              ||||||| |||| |||||||||||||||
Sbjct: 172504 ctggataaatattacattgggatttact 172477
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>gb|AC018980.10| Homo sapiens chromosome 10 clone RP11-476F14, complete sequence
          Length = 197709

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 165    ctggatatatataacattgggatttact 192
              ||||||| |||| |||||||||||||||
Sbjct: 172493 ctggataaatattacattgggatttact 172466
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>gb|AC090196.5| Homo sapiens chromosome 8, clone RP11-766A10, complete sequence
          Length = 175708

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    ctggcaagccctctaagatttcca 99
             |||| |||||||||||||||||||
Sbjct: 39099 ctgggaagccctctaagatttcca 39122
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>gb|AC016830.5| Homo sapiens chromosome 22 clone b81b3 map 22q11, complete sequence
          Length = 192720

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 623   ctcatcagcgccaggtgctg 642
             ||||||||||||||||||||
Sbjct: 59293 ctcatcagcgccaggtgctg 59312
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>gb|AC016027.15| Homo sapiens chromosome 22 clone b476c20 map 22q11, complete sequence
          Length = 174991

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 623   ctcatcagcgccaggtgctg 642
             ||||||||||||||||||||
Sbjct: 54574 ctcatcagcgccaggtgctg 54593
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>gb|AC026307.16|AC026307 Homo sapiens 12 BAC RP11-753N8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166357

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aagccctctaagatttccaa 100
             ||||||||||||||||||||
Sbjct: 60796 aagccctctaagatttccaa 60777
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>emb|BX248331.8| Zebrafish DNA sequence from clone CH211-236D3 in linkage group 11,
             complete sequence
          Length = 174071

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   aaacttttgtgctgcaggag 384
             ||||||||||||||||||||
Sbjct: 17222 aaacttttgtgctgcaggag 17203
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>gb|AC096663.1| Homo sapiens BAC clone RP11-103L19 from 2, complete sequence
          Length = 152416

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    tgagggagccagccatgcaaatga 59
             ||||||||||||||||||| ||||
Sbjct: 42996 tgagggagccagccatgcagatga 42973
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>emb|AL136297.3|CNS01DW1 Human chromosome 14 DNA sequence BAC R-60K23 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163918

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ttgaaaaccttgtctttggg 278
             ||||||||||||||||||||
Sbjct: 37349 ttgaaaaccttgtctttggg 37368
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>gb|AC006443.1|AC006443 Homo sapiens chromosome 9, clone  hRPK.494_N_15, complete sequence
          Length = 210636

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 514    caggtggaggtgggatcttg 533
              ||||||||||||||||||||
Sbjct: 124302 caggtggaggtgggatcttg 124283
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>dbj|AP003177.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-314C6, complete
              sequence
          Length = 171621

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    gctgcaggagacagattcct 394
              ||||||||||||||||||||
Sbjct: 129824 gctgcaggagacagattcct 129805
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>dbj|AP003055.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-201M22,
           complete sequence
          Length = 83000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 gctgcaggagacagattcct 394
           ||||||||||||||||||||
Sbjct: 625 gctgcaggagacagattcct 606
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>gb|AC005357.1|AC005357 Homo sapiens chromosome 19, cosmid F16593, complete sequence
          Length = 38717

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   atggtttgtgtggattttgc 349
             ||||||||||||||||||||
Sbjct: 11954 atggtttgtgtggattttgc 11973
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>dbj|AP006089.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT28L17, TM0153b,
             complete sequence
          Length = 92148

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   cagcaggtgtgccttcacat 507
             ||||||||||||||||||||
Sbjct: 63038 cagcaggtgtgccttcacat 63019
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>dbj|AP004531.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT13M14, TM0059,
             complete sequence
          Length = 94884

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 488   cagcaggtgtgccttcacat 507
             ||||||||||||||||||||
Sbjct: 56707 cagcaggtgtgccttcacat 56688
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>emb|AL356802.5|CNS05TDK Human chromosome 14 DNA sequence BAC C-2137E9 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 137883

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ttgaaaaccttgtctttggg 278
             ||||||||||||||||||||
Sbjct: 45045 ttgaaaaccttgtctttggg 45026
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>dbj|AP000344.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1269D1
          Length = 186421

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 623    ctcatcagcgccaggtgctg 642
              ||||||||||||||||||||
Sbjct: 100320 ctcatcagcgccaggtgctg 100339
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>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete
              sequence
          Length = 187735

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 443    aaacatatgtgttcgtgcctttat 466
              ||||||||||||||||| ||||||
Sbjct: 161895 aaacatatgtgttcgtgtctttat 161918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,875,591
Number of Sequences: 3902068
Number of extensions: 5875591
Number of successful extensions: 113513
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113317
Number of HSP's gapped (non-prelim): 192
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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