ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30o09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRH1_YEAST (P53301) Probable glycosidase CRH1 precursor (EC 3.2.... 32 1.4
2YLU2_PICAN (P34735) Hypothetical protein in LEU2 3'region (Fragm... 32 1.4
3LON_MYCGE (P47481) ATP-dependent protease La (EC 3.4.21.53) 30 5.3
4WN10B_MOUSE (P48614) Protein Wnt-10b precursor (Wnt-12) 30 5.3
5A16L1_PONPY (Q5RAC9) Autophagy-related protein 16-1 (APG16-like 1) 30 9.0
6HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6) 30 9.0
7WN10B_HUMAN (O00744) Protein Wnt-10b precursor (Wnt-12) 30 9.0

>CRH1_YEAST (P53301) Probable glycosidase CRH1 precursor (EC 3.2.-.-) (Congo|
           red hypersensitive protein 1)
          Length = 507

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
 Frame = +2

Query: 230 ALSSSTVDKNSCQASMMKDDKYPTTSMLQDDDVVPCSKSESSTIFSNDSISPXXXXXXXX 409
           ++SSS+   ++  +S         +S +        S S SST+ S+ S+S         
Sbjct: 301 SISSSSTSSSTVSSSASSTVSSSVSSTVSSSASSTVSSSVSSTVSSSSSVSSSSSTSPSS 360

Query: 410 XXXXXXXXTPKISLTTSE--PSREQNSGSSDKYMIFPNNVCTA--SFRLKPCSVNPDKSI 577
                       S+TTS    S E+ S SS K  +  ++   +  S    P +V+     
Sbjct: 361 STATSSKTLASSSVTTSSSISSFEKQSSSSSKKTVASSSTSESIISSTKTPATVSSTTRS 420

Query: 578 TIGP 589
           T+ P
Sbjct: 421 TVAP 424



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>YLU2_PICAN (P34735) Hypothetical protein in LEU2 3'region (Fragment)|
          Length = 373

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
 Frame = +2

Query: 227 TALSSSTVDKNSCQASMMKDDKYPTTSMLQDDDVVPCSKSESSTIFSNDSISPXXXXXXX 406
           T  SSS+   +S  +S  K    P +S +   D  P S S S++  +  SIS        
Sbjct: 130 TTSSSSSSLSSSSTSSSSKQSSSPQSSTMSSTDSSPTSSSLSASSTTTSSISSFSFSQSS 189

Query: 407 XXXXXXXXXTP---KISLTTS-EPSREQNS 484
                    TP    + +TTS  P   Q S
Sbjct: 190 SSSSTTSSSTPSSESVRITTSVSPGNMQTS 219



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>LON_MYCGE (P47481) ATP-dependent protease La (EC 3.4.21.53)|
          Length = 795

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
 Frame = -3

Query: 663 KASMLEDNEVAEILNEISRRIVREKGPIVMDLSGFTEQGFKRKLAVQTLFGKI------- 505
           K ++LE+NE+A  L +I +  + +   I         Q + R    +T F K+       
Sbjct: 189 KQAILEENEIANRLEKIIQAGIEDLQKI---------QDYGRSKNKETEFDKLDSKITRK 239

Query: 504 ---MYLSELPEFCSRDGSLVVKEIFGVTDEDADSLRS--RTLSEAGDIESLEKMV--DDS 346
                  +  +F  R+   +++E  G++ +  D + S  + L E    E+++K +  +  
Sbjct: 240 INEQLSRQQRDFYLREKLRIIREEIGISSKKEDEVASIRKKLDENPYPEAIKKRILSELE 299

Query: 345 DFEHGTTSSS*SMLVVGYLSSFIIEAW 265
            +E+ ++SS  S L   Y+ + +   W
Sbjct: 300 HYENSSSSSQESTLTKTYIDTLLNLPW 326



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>WN10B_MOUSE (P48614) Protein Wnt-10b precursor (Wnt-12)|
          Length = 389

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 582 IVMDLSGFTEQGFKRKLAVQTLFGKIMYLSELPEFCSRDGSL 457
           I +D        F+ +L  + L G+++Y  + P+FC RD +L
Sbjct: 283 IFIDTHNRNSGAFQPRLRPRRLSGELVYFEKSPDFCERDPTL 324



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>A16L1_PONPY (Q5RAC9) Autophagy-related protein 16-1 (APG16-like 1)|
          Length = 607

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 26/87 (29%), Positives = 36/87 (41%)
 Frame = -3

Query: 549 GFKRKLAVQTLFGKIMYLSELPEFCSRDGSLVVKEIFGVTDEDADSLRSRTLSEAGDIES 370
           G  R++ +  +FG         E C   GSL      G+T  + DS  S  L+ + D  S
Sbjct: 341 GMDRRVKLWEVFG---------EKCEFKGSLSGSNA-GITSIEFDSAGSYLLAASNDFAS 390

Query: 369 LEKMVDDSDFEHGTTSSS*SMLVVGYL 289
               VDDS   H  T  S  +L   +L
Sbjct: 391 RIWTVDDSRLRHTLTGHSGKVLSAKFL 417



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>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)|
          Length = 5635

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -3

Query: 639  EVAEILNEISRRIVREKGPIVMDLSGFTEQGFKRKLAVQTLFGKIMYLSELPEFCSRDGS 460
            ++  ILN I     +E G  V   +  T   FKR+  V+   G+I+ +S +      DGS
Sbjct: 4925 KIVSILNPIYWTTAKEIGEAVNGFT-LTNAVFKRETQVEFATGEILQMSHIARGLDSDGS 4983

Query: 459  LVV 451
            L++
Sbjct: 4984 LLL 4986



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>WN10B_HUMAN (O00744) Protein Wnt-10b precursor (Wnt-12)|
          Length = 389

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 582 IVMDLSGFTEQGFKRKLAVQTLFGKIMYLSELPEFCSRDGSL 457
           I +D        F+ +L  + L G+++Y  + P+FC RD ++
Sbjct: 283 IFIDTHNRNSGAFQPRLRPRRLSGELVYFEKSPDFCERDPTM 324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,610,642
Number of Sequences: 219361
Number of extensions: 1749587
Number of successful extensions: 5098
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5086
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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