Clone Information

BLAST Search Result

Clone Name	rbags31d09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009392.1\| Triticum aestivum clone wlm96.pk037.f18:fis, full...	1035	0.0
2	ref\|NM_197149.1\| Oryza sativa (japonica cultivar-group) putative...	432	e-118
3	dbj\|AK071544.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	426	e-116
4	gb\|AY108206.1\| Zea mays PCO093732 mRNA sequence	339	7e-90
5	gb\|BT017894.1\| Zea mays clone EL01N0515C03.c mRNA sequence	307	3e-80
6	gb\|AC107206.4\| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom...	155	2e-34
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	155	2e-34
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	155	2e-34
9	gb\|AC068950.11\| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen...	147	6e-32
10	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	147	6e-32
11	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	147	6e-32
12	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	50	0.010
13	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	44	0.60
14	gb\|AE000666.1\| Methanothermobacter thermautotrophicus str. Delta...	44	0.60
15	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	44	0.60
16	emb\|AL354833.9\| Human DNA sequence from clone RP11-157L14 on chr...	42	2.4
17	emb\|AL080274.21\|HS1012F16 Human DNA sequence from clone RP5-1012...	42	2.4
18	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.4
19	dbj\|AP004615.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.4
20	gb\|AE001439.1\| Helicobacter pylori J99, complete genome	42	2.4
21	gb\|AE000511.1\| Helicobacter pylori 26695, complete genome	42	2.4
22	gb\|AC147383.4\| Pan troglodytes BAC clone RP43-157C2 from 7, comp...	40	9.4
23	gb\|AC123860.4\| Mus musculus BAC clone RP23-349N13 from chromosom...	40	9.4
24	gb\|AC002540.1\| Homo sapiens BAC clone GS1-25M2 from 7, complete ...	40	9.4
25	gb\|AC132324.3\| Mus musculus BAC clone RP24-270C24 from chromosom...	40	9.4
26	emb\|BX649466.19\| Zebrafish DNA sequence from clone DKEY-31C8 in ...	40	9.4
27	emb\|AL137005.6\| Human DNA sequence from clone RP1-230L10 on chro...	40	9.4
28	emb\|AL939112.1\|SCO939112 Streptomyces coelicolor A3(2) complete ...	40	9.4
29	emb\|AJ009897.1\|TNAJ9897 Thermotoga neapolitana argC, argJ genes ...	40	9.4
30	gb\|AC108487.2\| Homo sapiens chromosome 3 clone RP11-733E24, comp...	40	9.4
31	gb\|AC025946.9\| Homo sapiens chromosome 10 clone RP11-543F8, comp...	40	9.4
32	gb\|AC152954.1\| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cance...	40	9.4
33	gb\|AC006986.3\|AC006986 Homo sapiens BAC clone RP11-155J5 from Y,...	40	9.4
34	gb\|AC025812.11\|AC025812 Homo sapiens chromosome 3 clone RP11-182...	40	9.4
35	gb\|AC087653.6\| Homo sapiens chromosome 11, clone RP1-259N9, comp...	40	9.4
36	gb\|AC011286.7\| Homo sapiens BAC clone RP11-4H21 from 2, complete...	40	9.4
37	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	40	9.4
38	gb\|AF152365.1\|AF152365 Homo sapiens constitutive fragile region ...	40	9.4
39	gb\|AF115103.1\|AF115103 Streptococcus thermophilus bacteriophage ...	40	9.4
40	emb\|BX005050.6\| Zebrafish DNA sequence from clone CH211-11A11, c...	40	9.4
41	emb\|CT025570.7\| Mouse DNA sequence from clone RP24-82O4 on chrom...	40	9.4

>gb|BT009392.1| Triticum aestivum clone wlm96.pk037.f18:fis, full insert mRNA
            sequence
          Length = 1654

 Score = 1035 bits (522), Expect = 0.0
 Identities = 621/653 (95%), Gaps = 2/653 (0%)
 Strand = Plus / Minus

                                                                        
Query: 36   tgtctctgaatcgggttttacactgctttattgatctcatgacaacaatgcaatgtagaa 95
            ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct: 1637 tgtctctgaatcgggttttacactgctttattgatctcatgacaacaatccactgtagga 1578

                                                                        
Query: 96   tgtaacagccttcggactttcattacaccaagccgctcagttcatactcttattcaactg 155
            | ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1577 tataatagcctttggactttcattacaccaagccactcagttcatactcttattcaactg 1518

                                                                        
Query: 156  ctaattgctgctcaactctaaatactacaccagcataaaccaagttttgattttgagaga 215
            ||||||| |||||  |||||||||||||||||||| ||||||||||||| | ||||| ||
Sbjct: 1517 ctaattgttgctcctctctaaatactacaccagcacaaaccaagttttgctgttgagcga 1458

                                                                        
Query: 216  gtttggttacattccaacattcagctctttgcttctcaatggaaaacagagatgggtgct 275
            ||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1457 gtttggttacactccgacattcagctctttgcttctcaacggaaaacagagatgggtgct 1398

                                                                        
Query: 276  taactccaaagcatcatcgagacagaacacaacaaaggcacaa--tatcaaggaaatagg 333
            |||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||
Sbjct: 1397 taactccaaagcatcatcgagaaagagcacaacaaaggcacaacatatcaaggaaatagg 1338

                                                                        
Query: 334  ggctgatattgcagtcccatgttctcaggcagtcccatcatcagattgaggttctgcacg 393
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 ggctgatattgcagccccatgttctcaggcagtcccatcatcagattgaggttctgcacg 1278

                                                                        
Query: 394  gcctggccagatgcccccttcacaagattgtctatgacagagatgatgatggcccttccg 453
            |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| 
Sbjct: 1277 gcctggccagatgctccctttacaagattgtctatgacagagatgatgattgcccttcca 1218

                                                                        
Query: 454  ggaattctgtcctcgaagacattcatgaagcagtaattcgatccaacaacatggcgtgtg 513
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1217 ggaattctgtcctcgaagacattcatgaagcagtaatttgatccaacaacatggcgtgtg 1158

                                                                        
Query: 514  tgaggaacattgctgtcatttaacaacttcacaaattcttcaccctcataagtagacttc 573
            ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| 
Sbjct: 1157 tgaggaacattgctgccatttaacagcttgacaaattcttcaccctcataagtagacttg 1098

                                                                        
Query: 574  agatgctgatacaaatcactgacagtcactccaggtgccatttcaacaaacatagtagat 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 agatgctgatacaaatcactgacagtcactccaggtgccatttcaacaaacatagtagat 1038

                                                                 
Query: 634  tgcatgccacgtttcatgcagataagatttggagtgaagctgatagtaacttt 686
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 tgcatcccacgtttcatgcagataagatttggagtgaagctgatagtaacttt 985

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>ref|NM_197149.1| Oryza sativa (japonica cultivar-group) putative
            N-acetyl-gamma-glutamyl-phosphate reductase
            (OSJNBa0041P03.17), mRNA
          Length = 1251

 Score =  432 bits (218), Expect = e-118
 Identities = 326/362 (90%)
 Strand = Plus / Minus

                                                                        
Query: 325  ggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagattgagg 384
            ||||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||
Sbjct: 1247 ggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagattgagg 1188

                                                                        
Query: 385  ttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatgatgatg 444
            ||||| || ||||| ||||| || |||||||||||||| ||||| |||||||||||||||
Sbjct: 1187 ttctggacagcctgaccagacgctcccttcacaagattatctataacagagatgatgatg 1128

                                                                        
Query: 445  gcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaacaaca 504
            |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 1127 gcccttccaggaatcctgtcctcgaagacattcatgaagcagtaatttgatcccacgaca 1068

                                                                        
Query: 505  tggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccctcataa 564
            ||||| |||||||||||| ||||| ||| ||| | ||| ||||| ||||| |||||||||
Sbjct: 1067 tggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaactcttcgccctcataa 1008

                                                                        
Query: 565  gtagacttcagatgctgatacaaatcactgacagtcactccaggtgccatttcaacaaac 624
            |||||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct: 1007 gtagacttgagatgctggtacaaatcaccggcagtcactccaggtgccatttcaacaaac 948

                                                                        
Query: 625  atagtagattgcatgccacgtttcatgcagataagatttggagtgaagctgatagtaact 684
            || ||||||||||| ||||||||||| ||||| ||||||||||| || |||||||| |||
Sbjct: 947  atggtagattgcattccacgtttcatacagatcagatttggagtaaaactgatagtgact 888

              
Query: 685  tt 686
            ||
Sbjct: 887  tt 886

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>dbj|AK071544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100D05, full
            insert sequence
          Length = 1901

 Score =  426 bits (215), Expect = e-116
 Identities = 329/367 (89%)
 Strand = Plus / Minus

                                                                        
Query: 320  atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
            |||||||||||||||| ||||||||||| ||  ||||||| ||||| |||||||||||||
Sbjct: 1512 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 1453

                                                                        
Query: 380  tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 439
            | |||||||| || ||||| || ||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 1452 taaggttctgaacagcctgacctgatgctcccttcacaagattatctataacagatatga 1393

                                                                        
Query: 440  tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 499
            ||||||| | ||| |||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 1392 tgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaatttgatccca 1333

                                                                        
Query: 500  caacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 559
            ||||||||||||||||||||||  ||||  |||||||||  |||||||||||||||||||
Sbjct: 1332 caacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaattcttcaccct 1273

                                                                        
Query: 560  cataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccatttcaa 619
            |||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1272 catatgtagacttgagatgctgatacaaatcattggcagtcactccaggtgccatttcaa 1213

                                                                        
Query: 620  caaacatagtagattgcatgccacgtttcatgcagataagatttggagtgaagctgatag 679
            | ||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||
Sbjct: 1212 cgaacatagtagattgcatcccacgtttcatacaaatcagatttggagtaaagctgatag 1153

                   
Query: 680  taacttt 686
            | |||||
Sbjct: 1152 tgacttt 1146

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>gb|AY108206.1| Zea mays PCO093732 mRNA sequence
          Length = 1830

 Score =  339 bits (171), Expect = 7e-90
 Identities = 318/367 (86%)
 Strand = Plus / Minus

                                                                        
Query: 320  atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
            ||||||| || |||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct: 1497 atcaagggaacaggggctggtattgcagccccatattctcaggcagtcccatcatcagat 1438

                                                                        
Query: 380  tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 439
            | || || ||||  ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1437 taagattttgcaaagcctgaccagatgctcccttcacaagattatctatgacagagatga 1378

                                                                        
Query: 440  tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 499
            ||||||||||||| || ||||| |||||  |||||||||||||||||||||| ||||| |
Sbjct: 1377 tgatggcccttccaggtattctatcctcatagacattcatgaagcagtaatttgatccca 1318

                                                                        
Query: 500  caacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 559
            ||||||||| ||||  ||||||||||||  ||| ||||| ||| ||||||||||||  ||
Sbjct: 1317 caacatggcttgtgcaaggaacattgctaccatgtaacagcttgacaaattcttcattct 1258

                                                                        
Query: 560  cataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccatttcaa 619
            | ||||||||||| || || | ||||||||| |||  ||||||||||| ||||| |||||
Sbjct: 1257 cgtaagtagactttaggtgttcatacaaatccctgggagtcactccagatgccaattcaa 1198

                                                                        
Query: 620  caaacatagtagattgcatgccacgtttcatgcagataagatttggagtgaagctgatag 679
            || ||| |||||||||||| ||||||||||| || || | || |||||| ||||||||||
Sbjct: 1197 catacacagtagattgcatcccacgtttcatacacatcaaatgtggagtaaagctgatag 1138

                   
Query: 680  taacttt 686
            |||||||
Sbjct: 1137 taacttt 1131

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>gb|BT017894.1| Zea mays clone EL01N0515C03.c mRNA sequence
          Length = 1436

 Score =  307 bits (155), Expect = 3e-80
 Identities = 314/367 (85%)
 Strand = Plus / Minus

                                                                        
Query: 320  atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
            ||||||| || |||||||| |||||||| ||||| |||| ||||||||||||||||| ||
Sbjct: 1058 atcaagggaacaggggctggtattgcagccccatattcttaggcagtcccatcatcaaat 999

                                                                        
Query: 380  tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 439
            | || || ||||  ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 998  taagattttgcaaagcctgaccagatgctcccttcacaagattatctatgacagagatga 939

                                                                        
Query: 440  tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 499
            ||||||||||||| || ||||| |||||  |||||||||||||||||||||| |||||  
Sbjct: 938  tgatggcccttccaggtattctatcctcatagacattcatgaagcagtaatttgatcccc 879

                                                                        
Query: 500  caacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 559
            ||||||||| ||||  ||||||||||||  ||| ||||| ||| |||| |||||||  ||
Sbjct: 878  caacatggcttgtgcaaggaacattgctaccatgtaacagcttgacaatttcttcattct 819

                                                                        
Query: 560  cataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccatttcaa 619
            | ||||||||||| || || | ||||||||| |||  ||||||||||| ||||| |||||
Sbjct: 818  cgtaagtagactttaggtgttcatacaaatccctgggagtcactccagatgccaattcaa 759

                                                                        
Query: 620  caaacatagtagattgcatgccacgtttcatgcagataagatttggagtgaagctgatag 679
            || ||| |||||||||||| ||||||||||| || || | || |||||| ||||||||||
Sbjct: 758  catacacagtagattgcatcccacgtttcatacacatcaaatgtggagtaaagctgatag 699

                   
Query: 680  taacttt 686
            |||||||
Sbjct: 698  taacttt 692

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>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score =  155 bits (78), Expect = 2e-34
 Identities = 117/130 (90%)
 Strand = Plus / Plus

                                                                         
Query: 430   acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 489
             ||||| ||||||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 82772 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 82831

                                                                         
Query: 490   ttcgatccaacaacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaat 549
             || ||||| |||||||||||||||||||||||  ||||  |||||||||  |||||||||
Sbjct: 82832 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 82891

                       
Query: 550   tcttcaccct 559
             ||||||||||
Sbjct: 82892 tcttcaccct 82901



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                         
Query: 557   cctcataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccattt 616
             ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 83072 cctcatatgtagacttgagatgctgatacaaatcattggcagtcactccaggtgccattt 83131

                                             
Query: 617   caacaaacatagtagattgcatgccacgtttc 648
             |||| ||||||||||||||||| |||||||||
Sbjct: 83132 caacgaacatagtagattgcatcccacgtttc 83163



 Score =  113 bits (57), Expect = 8e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 320   atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
             |||||||||||||||| ||||||||||| ||  ||||||| ||||| |||||||||||||
Sbjct: 82566 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 82625

                                                              
Query: 380   tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 428
             | |||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 82626 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 82674



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 658   agatttggagtgaagctgatagtaacttt 686
             ||||||||||| ||||||||||| |||||
Sbjct: 83290 agatttggagtaaagctgatagtgacttt 83318

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 117/130 (90%)
 Strand = Plus / Plus

                                                                            
Query: 430      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 489
                ||||| ||||||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 23246291 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 23246350

                                                                            
Query: 490      ttcgatccaacaacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaat 549
                || ||||| |||||||||||||||||||||||  ||||  |||||||||  |||||||||
Sbjct: 23246351 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 23246410

                          
Query: 550      tcttcaccct 559
                ||||||||||
Sbjct: 23246411 tcttcaccct 23246420



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                            
Query: 557      cctcataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccattt 616
                ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 23246591 cctcatatgtagacttgagatgctgatacaaatcattggcagtcactccaggtgccattt 23246650

                                                
Query: 617      caacaaacatagtagattgcatgccacgtttc 648
                |||| ||||||||||||||||| |||||||||
Sbjct: 23246651 caacgaacatagtagattgcatcccacgtttc 23246682



 Score =  113 bits (57), Expect = 8e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 320      atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
                |||||||||||||||| ||||||||||| ||  ||||||| ||||| |||||||||||||
Sbjct: 23246085 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 23246144

                                                                 
Query: 380      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 428
                | |||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 23246145 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 23246193



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 658      agatttggagtgaagctgatagtaacttt 686
                ||||||||||| ||||||||||| |||||
Sbjct: 23246809 agatttggagtaaagctgatagtgacttt 23246837

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 2e-34
 Identities = 117/130 (90%)
 Strand = Plus / Plus

                                                                            
Query: 430      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 489
                ||||| ||||||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 23239319 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 23239378

                                                                            
Query: 490      ttcgatccaacaacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaat 549
                || ||||| |||||||||||||||||||||||  ||||  |||||||||  |||||||||
Sbjct: 23239379 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 23239438

                          
Query: 550      tcttcaccct 559
                ||||||||||
Sbjct: 23239439 tcttcaccct 23239448



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                            
Query: 557      cctcataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccattt 616
                ||||||| |||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct: 23239619 cctcatatgtagacttgagatgctgatacaaatcattggcagtcactccaggtgccattt 23239678

                                                
Query: 617      caacaaacatagtagattgcatgccacgtttc 648
                |||| ||||||||||||||||| |||||||||
Sbjct: 23239679 caacgaacatagtagattgcatcccacgtttc 23239710



 Score =  113 bits (57), Expect = 8e-22
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                            
Query: 320      atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
                |||||||||||||||| ||||||||||| ||  ||||||| ||||| |||||||||||||
Sbjct: 23239113 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 23239172

                                                                 
Query: 380      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 428
                | |||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 23239173 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 23239221



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 658      agatttggagtgaagctgatagtaacttt 686
                ||||||||||| ||||||||||| |||||
Sbjct: 23239837 agatttggagtaaagctgatagtgacttt 23239865

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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score =  147 bits (74), Expect = 6e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                         
Query: 430   acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 489
             ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 89424 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 89483

                                                                         
Query: 490   ttcgatccaacaacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaat 549
             || ||||| || |||||||| |||||||||||| ||||| ||| ||| | ||| ||||| 
Sbjct: 89484 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 89543

                       
Query: 550   tcttcaccct 559
             ||||| ||||
Sbjct: 89544 tcttcgccct 89553



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                         
Query: 557   cctcataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccattt 616
             |||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 89715 cctcataagtagacttgagatgctggtacaaatcaccggcagtcactccaggtgccattt 89774

                                             
Query: 617   caacaaacatagtagattgcatgccacgtttc 648
             |||||||||| ||||||||||| |||||||||
Sbjct: 89775 caacaaacatggtagattgcattccacgtttc 89806



 Score =  129 bits (65), Expect = 1e-26
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                         
Query: 320   atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
             |||| ||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||
Sbjct: 89218 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 89277

                                                              
Query: 380   tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 428
             |||||||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct: 89278 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 89326

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  147 bits (74), Expect = 6e-32
 Identities = 116/130 (89%)
 Strand = Plus / Minus

                                                                            
Query: 430      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 489
                ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 18261746 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 18261687

                                                                            
Query: 490      ttcgatccaacaacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaat 549
                || ||||| || |||||||| |||||||||||| ||||| ||| ||| | ||| ||||| 
Sbjct: 18261686 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 18261627

                          
Query: 550      tcttcaccct 559
                ||||| ||||
Sbjct: 18261626 tcttcgccct 18261617



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Minus

                                                                            
Query: 557      cctcataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccattt 616
                |||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 18261455 cctcataagtagacttgagatgctggtacaaatcaccggcagtcactccaggtgccattt 18261396

                                                
Query: 617      caacaaacatagtagattgcatgccacgtttc 648
                |||||||||| ||||||||||| |||||||||
Sbjct: 18261395 caacaaacatggtagattgcattccacgtttc 18261364



 Score =  129 bits (65), Expect = 1e-26
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                            
Query: 320      atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
                |||| ||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||
Sbjct: 18261952 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 18261893

                                                                 
Query: 380      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 428
                |||||||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct: 18261892 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 18261844

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  147 bits (74), Expect = 6e-32
 Identities = 116/130 (89%)
 Strand = Plus / Minus

                                                                            
Query: 430      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 489
                ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 18270999 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 18270940

                                                                            
Query: 490      ttcgatccaacaacatggcgtgtgtgaggaacattgctgtcatttaacaacttcacaaat 549
                || ||||| || |||||||| |||||||||||| ||||| ||| ||| | ||| ||||| 
Sbjct: 18270939 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 18270880

                          
Query: 550      tcttcaccct 559
                ||||| ||||
Sbjct: 18270879 tcttcgccct 18270870



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Minus

                                                                            
Query: 557      cctcataagtagacttcagatgctgatacaaatcactgacagtcactccaggtgccattt 616
                |||||||||||||||| |||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 18270708 cctcataagtagacttgagatgctggtacaaatcaccggcagtcactccaggtgccattt 18270649

                                                
Query: 617      caacaaacatagtagattgcatgccacgtttc 648
                |||||||||| ||||||||||| |||||||||
Sbjct: 18270648 caacaaacatggtagattgcattccacgtttc 18270617



 Score =  129 bits (65), Expect = 1e-26
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                            
Query: 320      atcaaggaaataggggctgatattgcagtcccatgttctcaggcagtcccatcatcagat 379
                |||| ||||||||||||||||||||||| ||  ||||||||||||| |||||||||||||
Sbjct: 18271205 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 18271146

                                                                 
Query: 380      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 428
                |||||||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct: 18271145 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 18271097

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 356     tctcaggcagtcccatcatcagattgaggttctgcacggcctggc 400
               |||| |||||||||| |||  ||||||||||||| ||||||||||
Sbjct: 2749111 tctccggcagtcccagcatgcgattgaggttctggacggcctggc 2749067

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 378     attgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgac 431
               ||||||||||||||| |||||||| || || ||||| || || ||||| |||||
Sbjct: 6393078 attgaggttctgcaccgcctggcccgaagcgcccttgaccaggttgtcgatgac 6393131

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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 384    gttctgcacggcctggccagatgcccccttcacaagattgtctatg 429
              |||||| | |||||| || ||||| ||||||||||| |||||||||
Sbjct: 769635 gttctggatggcctgaccggatgcgcccttcacaaggttgtctatg 769590

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 372     catcagattgaggttctgcacggcctggcc 401
               ||||||||| ||||||||||| ||||||||
Sbjct: 3994410 catcagattcaggttctgcaccgcctggcc 3994439

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>emb|AL354833.9| Human DNA sequence from clone RP11-157L14 on chromosome 13 Contains an
              olfactory receptor pseudogene,  a novel gene (RGC32), the
              3' end of a novel gene (contains KIAA0564 and FLJ21779)
              possible ortholog of RIKEN cDNA 1300010F03 gene, and 2 CpG
              islands, complete sequence
          Length = 158871

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 302    acacaacaaaggcacaatatcaaggaaat 330
              |||||| ||||| ||||||||||||||||
Sbjct: 144377 acacaaaaaaggaacaatatcaaggaaat 144349

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>emb|AL080274.21|HS1012F16 Human DNA sequence from clone RP5-1012F16 on chromosome 20 Contains a
             novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 74539

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   tgcttctcaatggaaaacaga 265
             |||||||||||||||||||||
Sbjct: 61210 tgcttctcaatggaaaacaga 61190

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 23       cagcaatggttgatgtctctg 43
                |||||||||||||||||||||
Sbjct: 24326262 cagcaatggttgatgtctctg 24326242

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>dbj|AP004615.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0414C05
          Length = 123105

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    cagcaatggttgatgtctctg 43
             |||||||||||||||||||||
Sbjct: 50892 cagcaatggttgatgtctctg 50872

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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 200     ttttgattttgagagagtttg 220
               |||||||||||||||||||||
Sbjct: 1105500 ttttgattttgagagagtttg 1105520

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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 200    ttttgattttgagagagtttg 220
              |||||||||||||||||||||
Sbjct: 396330 ttttgattttgagagagtttg 396310

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>gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, complete sequence
          Length = 190266

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    atgacagagatgatgatggc 446
              ||||||||||||||||||||
Sbjct: 125865 atgacagagatgatgatggc 125884

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>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     cactgctttattgatctcat 75
              ||||||||||||||||||||
Sbjct: 181012 cactgctttattgatctcat 181031

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>gb|AC002540.1| Homo sapiens BAC clone GS1-25M2 from 7, complete sequence
          Length = 70851

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   atgacagagatgatgatggc 446
             ||||||||||||||||||||
Sbjct: 46892 atgacagagatgatgatggc 46911

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>gb|AC132324.3| Mus musculus BAC clone RP24-270C24 from chromosome 13, complete
             sequence
          Length = 169258

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     taacttatccattctgacag 25
             ||||||||||||||||||||
Sbjct: 43653 taacttatccattctgacag 43672

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>emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in linkage group 12,
             complete sequence
          Length = 101015

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gtttggttacattccaacat 235
             ||||||||||||||||||||
Sbjct: 89011 gtttggttacattccaacat 88992

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>emb|AL137005.6| Human DNA sequence from clone RP1-230L10 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 103679

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 586   aaatcactgacagtcactccaggtgcca 613
             ||||||||| |||||||||||| |||||
Sbjct: 11711 aaatcactgtcagtcactccagctgcca 11684

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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    ttgaggttctgcacggcctg 398
              ||||||||||||||||||||
Sbjct: 162032 ttgaggttctgcacggcctg 162051

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>emb|AJ009897.1|TNAJ9897 Thermotoga neapolitana argC, argJ genes and partial argH, argB genes
          Length = 3250

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 394  gcctggccagatgcccccttcacaagattgtctatg 429
            ||||| || |||||||||||||| || |||||||||
Sbjct: 1800 gcctgacccgatgcccccttcacgaggttgtctatg 1765

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>gb|AC108487.2| Homo sapiens chromosome 3 clone RP11-733E24, complete sequence
          Length = 180925

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    ggcacaatatcaaggaaata 331
              ||||||||||||||||||||
Sbjct: 136559 ggcacaatatcaaggaaata 136578

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>gb|AC025946.9| Homo sapiens chromosome 10 clone RP11-543F8, complete sequence
          Length = 197191

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    tcagattgaggttctgcacg 393
              ||||||||||||||||||||
Sbjct: 102671 tcagattgaggttctgcacg 102652

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>gb|AC152954.1| Mus musculus 6 BAC RP23-296N5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203474

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 244    ttgcttctcaatggaaaacagaga 267
              ||||||||||||||||| ||||||
Sbjct: 119877 ttgcttctcaatggaaagcagaga 119900

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>gb|AC006986.3|AC006986 Homo sapiens BAC clone RP11-155J5 from Y, complete sequence
          Length = 173957

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    tcaggcagtcccatcatcag 377
              ||||||||||||||||||||
Sbjct: 146957 tcaggcagtcccatcatcag 146938

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>gb|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182G24, complete sequence
          Length = 149006

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ggcacaatatcaaggaaata 331
             ||||||||||||||||||||
Sbjct: 76008 ggcacaatatcaaggaaata 76027

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>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence
          Length = 138141

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 424    tctatgacagagatgatgatggcc 447
              |||||||||||| |||||||||||
Sbjct: 120009 tctatgacagaggtgatgatggcc 120032

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>gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete sequence
          Length = 168863

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 604    ccaggtgccatttcaacaaa 623
              ||||||||||||||||||||
Sbjct: 117112 ccaggtgccatttcaacaaa 117131

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 367     cccatcatcagattgaggttctgcacggcctg 398
               |||| |||||| |||||||||||||| |||||
Sbjct: 1141652 cccagcatcaggttgaggttctgcaccgcctg 1141683

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>gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 246546

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    ggcacaatatcaaggaaata 331
              ||||||||||||||||||||
Sbjct: 110166 ggcacaatatcaaggaaata 110185

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>gb|AF115103.1|AF115103 Streptococcus thermophilus bacteriophage Sfi21, complete genome
          Length = 40739

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 532   tttaacaacttcacaaattc 551
             ||||||||||||||||||||
Sbjct: 38116 tttaacaacttcacaaattc 38097

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>emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, complete sequence
          Length = 166695

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   cattcagctctttgcttctc 252
             ||||||||||||||||||||
Sbjct: 26750 cattcagctctttgcttctc 26731

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>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cactgctttattgatctcat 75
              ||||||||||||||||||||
Sbjct: 148896 cactgctttattgatctcat 148877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,411,054
Number of Sequences: 3902068
Number of extensions: 6411054
Number of successful extensions: 117350
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117039
Number of HSP's gapped (non-prelim): 310
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result