ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30n24 |
|---|---|
| Clone Library Name | barley_pub |
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 62.0 bits (149), Expect = 1e-09 Identities = 24/70 (34%), Positives = 42/70 (60%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G F+ L+ + W + G VFF FWV+ HLYPF KG++G+ +TP +V++W Sbjct: 895 GVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLA 954 Query: 299 VITAVLYINI 270 + +++++ I Sbjct: 955 SVFSLVWVRI 964
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 62.0 bits (149), Expect = 1e-09 Identities = 23/70 (32%), Positives = 42/70 (60%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G + ++ + W + G +FF+FWV+ HLYPF KG++G+ +TP +V++W Sbjct: 938 GVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLA 997 Query: 299 VITAVLYINI 270 I ++L++ I Sbjct: 998 SIFSLLWVRI 1007
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 61.6 bits (148), Expect = 1e-09 Identities = 25/70 (35%), Positives = 39/70 (55%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G V + + + W + G +FF FWV+ HLYPF KG+LGK + P ++LVW Sbjct: 981 GVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLA 1040 Query: 299 VITAVLYINI 270 I +L++ + Sbjct: 1041 SILTLLWVRV 1050
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 60.5 bits (145), Expect = 3e-09 Identities = 25/70 (35%), Positives = 41/70 (58%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G + ++ + W + G + F FWV+ HLYPF KG+LG+ +TP +V+VW A Sbjct: 979 GIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLA 1038 Query: 299 VITAVLYINI 270 I ++L++ I Sbjct: 1039 SIFSLLWVRI 1048
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 60.5 bits (145), Expect = 3e-09 Identities = 24/70 (34%), Positives = 41/70 (58%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G + ++ + W + G +FF FWV+ HLYPF KG++G+ +TP +V+VW Sbjct: 977 GVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLA 1036 Query: 299 VITAVLYINI 270 I ++L++ I Sbjct: 1037 SIFSLLWVRI 1046
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 59.3 bits (142), Expect = 6e-09 Identities = 24/70 (34%), Positives = 39/70 (55%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G V + ++ + W + G +FF WV+ HLYPF KG+LGK + P ++LVW Sbjct: 999 GVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLA 1058 Query: 299 VITAVLYINI 270 I +L++ + Sbjct: 1059 SILTLLWVRV 1068
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 58.5 bits (140), Expect = 1e-08 Identities = 24/70 (34%), Positives = 40/70 (57%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G + ++ + W + G +FF WV+ HLYPF KG+LG+ +TP +V+VW Sbjct: 992 GIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLA 1051 Query: 299 VITAVLYINI 270 I ++L++ I Sbjct: 1052 SIFSLLWVRI 1061
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 58.2 bits (139), Expect = 1e-08 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G V + + + W + G +FF WV+ HLYPF KG+LGK K P +++VW Sbjct: 995 GVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLA 1054 Query: 299 VITAVLYINI 270 I +L++ + Sbjct: 1055 SILTLLWVRV 1064
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 57.8 bits (138), Expect = 2e-08 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G V + + + W + G +FF WV+ HLYPF KG+LGK + P +++VW Sbjct: 996 GVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLA 1055 Query: 299 VITAVLYINI 270 I +L++ + Sbjct: 1056 SILTLLWVRV 1065
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 57.8 bits (138), Expect = 2e-08 Identities = 22/70 (31%), Positives = 41/70 (58%) Frame = -2 Query: 479 GSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTF 300 G + ++ + W + G +FF FWV+ HLYPF KG++G+ +TP +V++W Sbjct: 961 GVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLA 1020 Query: 299 VITAVLYINI 270 I +++++ I Sbjct: 1021 SIFSLVWVRI 1030
>CXA10_MOUSE (Q9WUS4) Gap junction alpha-10 protein (Connexin-57) (Cx57)| Length = 505 Score = 33.5 bits (75), Expect = 0.36 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = -1 Query: 252 GRQAHNGAWSPWQEVGRHRALWLAPLMTLPGQDDLRQETTHPLNSQCMHPSHREAEPA 79 G +G W+ G +A +L+ LM+ GQ ++ LNS C+ SH E P+ Sbjct: 411 GSARESGVWTDRLGPGSRKASFLSRLMSEKGQRHSDSGSSRSLNSSCLDFSHGENSPS 468
>WIF1_HUMAN (Q9Y5W5) Wnt inhibitory factor 1 precursor (WIF-1)| Length = 379 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%) Frame = +2 Query: 140 SCLRSSCPGKVINGA--SHRALCR-PTSCHGDHAPLCACLPR 256 +C ++ CPG NG + R +C P HG H C PR Sbjct: 176 TCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPR 217
>ZN473_HUMAN (Q8WTR7) Zinc finger protein 473 (Zinc finger protein 100 homolog)| (Zfp-100) Length = 871 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = +1 Query: 67 NSNFGGLCFSMRWMHALTVEWMSCFLSQVVLSGQ------SHQWSQP*SPVST 207 NSNFG C W+ +L + S S + +G+ SH+ + SPVST Sbjct: 109 NSNFGEACIEDTWLDSLLGDPESLLRSDIATNGESPTECKSHELKRGLSPVST 161
>DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1551 Score = 30.8 bits (68), Expect = 2.4 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = -2 Query: 407 FFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYI 276 F FW+ HLY F +L HG ++ + + F++ A++Y+ Sbjct: 1218 FRGFWLTHHLYIFLYILLIIHGSFALIQMPRFHIFFLVPAIIYV 1261
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 30.0 bits (66), Expect = 4.0 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = +1 Query: 355 RMPLAKG*RWKSTQKLKKTPPATLSQCVHSPSRTLAKATA---DPMMLTKMMMMGVIMS 522 +MP+ + W +++ L P A CV P +T KA A DP K + ++S Sbjct: 2482 KMPVLESSSWPASKGLGHMPRAVEKGCVSDPLQTSGKAAAPSEDPWQAVKSLTQARLLS 2540
>DUOX2_RAT (Q9ES45) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-)| (NADH/NADPH thyroid oxidase THOX2) (Thyroid oxidase 2) (Large NOX 2) (Long NOX 2) Length = 1517 Score = 30.0 bits (66), Expect = 4.0 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = -2 Query: 407 FFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYI 276 F FW+ HLY ++ HG ++ L + F++ A++Y+ Sbjct: 1184 FRGFWLTHHLYVVLYALIIIHGSYALIQLPSFHIYFLVPAIIYV 1227
>DUOX2_HUMAN (Q9NRD8) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2) (Thyroid oxidase 2) (NADH/NADPH thyroid oxidase p138-tox) (p138 thyroid oxidase) (Large NOX 2) (Long NOX 2) Length = 1548 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = -2 Query: 407 FFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLY 279 F FW+ HLY +L HG ++ L + F++ A++Y Sbjct: 1215 FRGFWLTHHLYILLYALLIIHGSYALIQLPTFHIYFLVPAIIY 1257
>Y1025_METJA (Q58431) Hypothetical protein MJ1025| Length = 388 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = -2 Query: 428 LKVAGGVFFNFWVLFHLYPFAKGILGKHGK 339 LK+A GVF + LF P+ GI+GK K Sbjct: 331 LKIASGVFAIYLSLFSKVPYTNGIVGKDFK 360
>MRIP_RAT (Q9ERE6) Myosin phosphatase Rho-interacting protein| (Rho-interacting protein 3) (p116Rip) (RIP3) Length = 1029 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = +1 Query: 319 TSTTTGVFPCFPRMPLAKG*RWKSTQKLKKTPPATLSQCVHSPSRTLAKATADP 480 +S+++ P ++P K W+ + K P T V SPS++ A P Sbjct: 189 SSSSSSSIPSAEKVPTTKSTLWQEEMRAKDQPDGTSLSPVQSPSQSQPPAACTP 242
>NORB_PSEST (P98008) Nitric-oxide reductase subunit B (EC 1.7.99.7) (Nitric| oxide reductase cytochrome b subunit) (NOR large subunit) Length = 473 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 479 GSAVAFAKVLDG-EWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVV 324 G+A++F D WL+ GVFF ++ +LY F + G+ PVVV Sbjct: 420 GAAMSFMNTADQLAIFFWLRFIAGVFFLIGLVCYLYSFR-----QRGRVPVVV 467
>BRE3_CAEEL (Q03562) Beta 1,4-mannosyltransferase bre-3 (EC 2.4.1.-) (Bt toxin| resistant-3 protein) Length = 455 Score = 28.9 bits (63), Expect = 9.0 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Frame = +1 Query: 112 ALTVEWMSCFLSQVVLSGQSHQWSQP*SPVSTNFLPW*PC-------TVVCLPPEVCMWG 270 A+ V W+ CF + + + S P SPV++ L W C ++ LP +C G Sbjct: 12 AVLVAWIVCFAYFCGVFTEPVEGSVPESPVASYGLIWTVCLYLLRFTALLVLPQCLCNLG 71 Query: 271 MLM*STAVMTKVNAHQTSTTTGVFPCF 351 LM A KV + + F CF Sbjct: 72 GLMMFNAFREKVQL-KAAPLLSPFVCF 97
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -2 Query: 407 FFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYI 276 F FW+ HLY +L HG ++ L + F++ A++Y+ Sbjct: 1220 FRGFWLTHHLYILLYMLLIIHGSFALIQLPRFHIFFLVPALIYV 1263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,677,068 Number of Sequences: 219361 Number of extensions: 965101 Number of successful extensions: 2711 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2633 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2711 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
