| Clone Name | rbags30n18 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1... | 97 | 3e-20 | 2 | PDR6_YEAST (P32767) Pleiotropic drug resistance regulatory prote... | 32 | 1.3 | 3 | EFTU_STAWA (Q93PU8) Elongation factor Tu (EF-Tu) (Fragment) | 30 | 3.7 | 4 | CR1HB_BACTM (Q45718) Pesticidal crystal protein cry1Hb (Insectic... | 30 | 6.4 | 5 | ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2) | 30 | 6.4 | 6 | FWDA_METJA (Q58569) Protein fwdA | 30 | 6.4 |
|---|
>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)| (MURUS3 protein) Length = 619 Score = 97.1 bits (240), Expect = 3e-20 Identities = 51/89 (57%), Positives = 64/89 (71%), Gaps = 7/89 (7%) Frame = -3 Query: 571 VSVSAIINKVTQLRRDIISDSEDKD-FIEENSWKYELL--GQRTIGPHEWDPFFSKPKPK 401 VSV A+I+KVT+LR+++I + D F+EENSWKY LL GQR G H WDPFFSKPKP Sbjct: 529 VSVQAVIDKVTRLRKNMIEGRTEYDYFVEENSWKYALLEEGQREAGGHVWDPFFSKPKPG 588 Query: 400 DMGADSGNS----SAEAAKNSWKIERGDQ 326 + G+ GN SA+AAKNSWK E+ D+ Sbjct: 589 EDGSSDGNGGTTISADAAKNSWKSEQRDK 617
>PDR6_YEAST (P32767) Pleiotropic drug resistance regulatory protein 6| Length = 1081 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = +1 Query: 310 VVRSNSGLLVRFSKNSWLLQLMNY 381 VVR +SG+ +KNSW+LQ MNY Sbjct: 329 VVRPDSGITDISNKNSWMLQYMNY 352
>EFTU_STAWA (Q93PU8) Elongation factor Tu (EF-Tu) (Fragment)| Length = 270 Score = 30.4 bits (67), Expect = 3.7 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 284 GSNTAVLADGALMQIRGKESLDAVVLVIMYVLDDPVPT 171 G + V+A AL + G E + +L +M +DD +PT Sbjct: 64 GDDVPVIAGSALKALEGDEKYEEKILELMQAVDDYIPT 101
>CR1HB_BACTM (Q45718) Pesticidal crystal protein cry1Hb (Insecticidal| delta-endotoxin CryIH(b)) (Crystaline entomocidal protoxin) (131 kDa crystal protein) Length = 1155 Score = 29.6 bits (65), Expect = 6.4 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Frame = +1 Query: 145 LVVPLLTPAVGTGSSRTYMI------TKTTASKDSLPRICIRAPSARTAVLLPSSHL*EQ 306 L P+ + + G +RT + T + +SLP + + S + LP E Sbjct: 355 LSAPIYSVSGGISPNRTRAVEGVRFLTARDNNLNSLPFLYRKEGSLDSFTELPPEDENEP 414 Query: 307 PVVRSNSGLL-VRFSKNSWLLQLMNYQNLHPCLWAWASRRMDPTHEVRLSAVLTV 468 P + + L RF+++S +L+ N+ + +++W R PT+EV S + + Sbjct: 415 PYIGYSHRLCHARFARSSVVLEPSNFARIP--VFSWTHRSAGPTNEVSSSRITQI 467
>ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2)| Length = 610 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/72 (29%), Positives = 33/72 (45%) Frame = -1 Query: 531 EEISSPTAKIKILLKRIAGSMNC*DSGQSDLMSGIHSSRSPSPKTWVQILVIHQLKQPRI 352 E +S+ K +LL + M ++ QS M H+ S T ++H KQ Sbjct: 514 EHLSTMKRKNVVLLYDLLLEMLDANTSQSSRMLAAHTKASLRMDTQQTTEILHTSKQQPA 573 Query: 351 LGKSNEETRIRP 316 L +SN++TR P Sbjct: 574 LKESNQDTRHSP 585
>FWDA_METJA (Q58569) Protein fwdA| Length = 567 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +2 Query: 35 RIYISLLSKQNK*KF*YEKVYMWRQSKGHVSYSLKDFWWY 154 R+ L+SK+ + ++ Y KV+ W Q + HV+ + K++ Y Sbjct: 396 RVIAWLMSKKYRDEWLYNKVHKWAQQRSHVADADKEYDLY 435 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,190,362 Number of Sequences: 219361 Number of extensions: 1638686 Number of successful extensions: 4344 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4260 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4340 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)