ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30n18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1... 97 3e-20
2PDR6_YEAST (P32767) Pleiotropic drug resistance regulatory prote... 32 1.3
3EFTU_STAWA (Q93PU8) Elongation factor Tu (EF-Tu) (Fragment) 30 3.7
4CR1HB_BACTM (Q45718) Pesticidal crystal protein cry1Hb (Insectic... 30 6.4
5ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2) 30 6.4
6FWDA_METJA (Q58569) Protein fwdA 30 6.4

>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)|
           (MURUS3 protein)
          Length = 619

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 51/89 (57%), Positives = 64/89 (71%), Gaps = 7/89 (7%)
 Frame = -3

Query: 571 VSVSAIINKVTQLRRDIISDSEDKD-FIEENSWKYELL--GQRTIGPHEWDPFFSKPKPK 401
           VSV A+I+KVT+LR+++I    + D F+EENSWKY LL  GQR  G H WDPFFSKPKP 
Sbjct: 529 VSVQAVIDKVTRLRKNMIEGRTEYDYFVEENSWKYALLEEGQREAGGHVWDPFFSKPKPG 588

Query: 400 DMGADSGNS----SAEAAKNSWKIERGDQ 326
           + G+  GN     SA+AAKNSWK E+ D+
Sbjct: 589 EDGSSDGNGGTTISADAAKNSWKSEQRDK 617



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>PDR6_YEAST (P32767) Pleiotropic drug resistance regulatory protein 6|
          Length = 1081

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +1

Query: 310 VVRSNSGLLVRFSKNSWLLQLMNY 381
           VVR +SG+    +KNSW+LQ MNY
Sbjct: 329 VVRPDSGITDISNKNSWMLQYMNY 352



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>EFTU_STAWA (Q93PU8) Elongation factor Tu (EF-Tu) (Fragment)|
          Length = 270

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 284 GSNTAVLADGALMQIRGKESLDAVVLVIMYVLDDPVPT 171
           G +  V+A  AL  + G E  +  +L +M  +DD +PT
Sbjct: 64  GDDVPVIAGSALKALEGDEKYEEKILELMQAVDDYIPT 101



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>CR1HB_BACTM (Q45718) Pesticidal crystal protein cry1Hb (Insecticidal|
           delta-endotoxin CryIH(b)) (Crystaline entomocidal
           protoxin) (131 kDa crystal protein)
          Length = 1155

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
 Frame = +1

Query: 145 LVVPLLTPAVGTGSSRTYMI------TKTTASKDSLPRICIRAPSARTAVLLPSSHL*EQ 306
           L  P+ + + G   +RT  +      T    + +SLP +  +  S  +   LP     E 
Sbjct: 355 LSAPIYSVSGGISPNRTRAVEGVRFLTARDNNLNSLPFLYRKEGSLDSFTELPPEDENEP 414

Query: 307 PVVRSNSGLL-VRFSKNSWLLQLMNYQNLHPCLWAWASRRMDPTHEVRLSAVLTV 468
           P +  +  L   RF+++S +L+  N+  +   +++W  R   PT+EV  S +  +
Sbjct: 415 PYIGYSHRLCHARFARSSVVLEPSNFARIP--VFSWTHRSAGPTNEVSSSRITQI 467



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>ESRB2_CARAU (Q9IAL9) Estrogen receptor beta-2 (ER-beta-2)|
          Length = 610

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -1

Query: 531 EEISSPTAKIKILLKRIAGSMNC*DSGQSDLMSGIHSSRSPSPKTWVQILVIHQLKQPRI 352
           E +S+   K  +LL  +   M   ++ QS  M   H+  S    T     ++H  KQ   
Sbjct: 514 EHLSTMKRKNVVLLYDLLLEMLDANTSQSSRMLAAHTKASLRMDTQQTTEILHTSKQQPA 573

Query: 351 LGKSNEETRIRP 316
           L +SN++TR  P
Sbjct: 574 LKESNQDTRHSP 585



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>FWDA_METJA (Q58569) Protein fwdA|
          Length = 567

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 35  RIYISLLSKQNK*KF*YEKVYMWRQSKGHVSYSLKDFWWY 154
           R+   L+SK+ + ++ Y KV+ W Q + HV+ + K++  Y
Sbjct: 396 RVIAWLMSKKYRDEWLYNKVHKWAQQRSHVADADKEYDLY 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,190,362
Number of Sequences: 219361
Number of extensions: 1638686
Number of successful extensions: 4344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4340
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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