ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIT1_SCHPO (O14132) Sporulation protein kinase pit1 (EC 2.7.11.1) 30 4.9
2YG22_YEAST (P53235) Hypothetical 71.3 kDa protein in SCM4-MUP1 i... 30 8.3
3PPNK_CAMJR (Q5HVD0) Probable inorganic polyphosphate/ATP-NAD kin... 30 8.3
4PPNK_CAMJE (Q9PHM6) Probable inorganic polyphosphate/ATP-NAD kin... 30 8.3

>PIT1_SCHPO (O14132) Sporulation protein kinase pit1 (EC 2.7.11.1)|
          Length = 650

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 614 ESCQSIGDASGGSFSSSELNGQPLNDALLDMESSSFGFLSQIPRNFSFSDL 462
           E  Q+ GD  GG +  +EL    L  +L  M    FG L   P N +F+ +
Sbjct: 262 EQSQNTGDKGGGIWDRAELLANKLGISLPKMAPLDFGDLFSPPWNLAFASM 312



to top

>YG22_YEAST (P53235) Hypothetical 71.3 kDa protein in SCM4-MUP1 intergenic|
           region
          Length = 642

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -1

Query: 659 DSSNADFAFCGNAFLESCQSIGDASGGSFSSSELNGQPLNDALLDMESSSFGFLS-QIPR 483
           DSSN  +      +L S Q +    GG+     L   P++D      S  FG ++  +P 
Sbjct: 256 DSSNKSYYGENTLYLLSFQGVNGTLGGNSVRVSLTTGPVHDFTWSPTSRQFGVIAGYMPA 315

Query: 482 NFSFSDL 462
             SF DL
Sbjct: 316 TISFFDL 322



to top

>PPNK_CAMJR (Q5HVD0) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 286

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 51  QYLRQXNITATNGGSYSHNINVQGRHNYNTFGKQPGGRTTACSHQVTTHPILL 209
           +Y     I AT  GS ++N++  G   Y     Q    T  CSH +T  PI+L
Sbjct: 174 EYFGDGLIVATPAGSTAYNLSANGPIVYTL--AQAFILTPVCSHSLTQRPIVL 224



to top

>PPNK_CAMJE (Q9PHM6) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 286

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 51  QYLRQXNITATNGGSYSHNINVQGRHNYNTFGKQPGGRTTACSHQVTTHPILL 209
           +Y     I AT  GS ++N++  G   Y     Q    T  CSH +T  PI+L
Sbjct: 174 EYFGDGLIVATPAGSTAYNLSANGPIVYTL--AQAFILTPVCSHSLTQRPIVL 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,021,940
Number of Sequences: 219361
Number of extensions: 2075980
Number of successful extensions: 5641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5639
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top