ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31c17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
2dbj|AK064803.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
4dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
5gb|AY107192.1| Zea mays PCO124577 mRNA sequence 141 3e-30
6ref|XM_464059.1| Oryza sativa (japonica cultivar-group), mRNA 139 1e-29
7dbj|AK073353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
8gb|BT024013.1| Zea mays clone EL01N0401G10 mRNA sequence 137 5e-29
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
10dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
11dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
12dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
13dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
14gb|AC055758.23| Homo sapiens 3 BAC RP11-88H10 (Roswell Park Canc... 42 2.3
15gb|AC092976.5| Homo sapiens 3q BAC RP11-297C5 (Roswell Park Canc... 42 2.3
16gb|AC078957.16| Homo sapiens Xp BAC RP11-339E16 (Roswell Park Ca... 42 2.3
17emb|Z24357.1|HS319ZF1 H. sapiens (D3S1608) DNA segment containin... 42 2.3
18gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, com... 40 9.0
19gb|AY329623.1| Mus musculus cellular nucleic acid binding protei... 40 9.0
20gb|AY329615.1| Mus musculus Cnbp gene, intron 1 and DM2 repeat r... 40 9.0
21gb|AC094900.9| Rattus norvegicus 4 BAC CH230-6J7 (Children's Hos... 40 9.0
22gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosom... 40 9.0
23gb|AC129023.4| Mus musculus BAC clone RP23-430E12 from chromosom... 40 9.0
24gb|AC092788.3| Homo sapiens BAC clone RP11-333G13 from 7, comple... 40 9.0
25gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete s... 40 9.0
26gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosom... 40 9.0
27gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, comple... 40 9.0
28gb|AC126695.4| Mus musculus BAC clone RP23-313D2 from 18, comple... 40 9.0
29emb|AL355358.9| Human DNA sequence from clone RP11-536L15 on chr... 40 9.0
30emb|BX548247.6| Zebrafish DNA sequence from clone DKEY-177G18 in... 40 9.0
31gb|AC104333.2| Homo sapiens chromosome 1 clone RP11-348H3, compl... 40 9.0
32gb|AC103921.2| Homo sapiens chromosome 3 clone RP11-131O21, comp... 40 9.0
33gb|AC103587.2| Homo sapiens chromosome 3 clone RP11-164G20, comp... 40 9.0
34gb|AC090736.5| Homo sapiens chromosome 8, clone RP11-1126C1, com... 40 9.0
35gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer... 40 9.0
36gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosom... 40 9.0
37gb|AY176064.1| Mus musculus cellular nucleic acid binding protei... 40 9.0
38gb|AC020603.4|AC020603 Homo sapiens BAC clone RP11-534K13 from 8... 40 9.0
39gb|AC153872.2| Mus musculus 6 BAC RP23-226O20 (Roswell Park Canc... 40 9.0
40gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, com... 40 9.0
41gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, r... 40 9.0
42gb|AC079807.5| Homo sapiens BAC clone RP11-760G15 from 2, comple... 40 9.0
43gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, comp... 40 9.0
44gb|AC012500.7| Homo sapiens BAC clone RP11-434M17 from 2, comple... 40 9.0
45gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chrom... 40 9.0
46dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 9.0
47gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 9.0
48emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chro... 40 9.0
49emb|Z92833.1|CEF38A6 Caenorhabditis elegans Cosmid F38A6, comple... 40 9.0
50gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68... 40 9.0
51emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, co... 40 9.0 
>dbj|AK121711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076O20, full
            insert sequence
          Length = 4769

 Score =  222 bits (112), Expect = 1e-54
 Identities = 258/306 (84%), Gaps = 3/306 (0%)
 Strand = Plus / Minus

                                                                        
Query: 353  ctgtatgttctccacctgtagaatctgagaagttatttggctcagatgagagaaatggtg 412
            |||| ||||| ||||||||||||||||| ||||||||| ||||||| | ||| || ||||
Sbjct: 4473 ctgtgtgttcaccacctgtagaatctgaaaagttattttgctcagaagggaggaacggtg 4414

                                                                        
Query: 413  acctgctataattgtccaatacttctgtattttggttgaacccctctgttaagtctgaaa 472
            || ||| ||||||||| |||| ||||||  ||||  ||||  |||||| || ||||||||
Sbjct: 4413 acttgccataattgtctaatatttctgtgctttgactgaaatcctctggtaggtctgaaa 4354

                                                                        
Query: 473  aactgaaattccggggaatctggctcaagaagccaaatgacgatgactccatatccaaaa 532
            ||   ||||| ||||||| ||| |||||||||||||| || ||||| || ||||||||||
Sbjct: 4353 aa---aaatttcggggaagctgactcaagaagccaaacgatgatgattcaatatccaaaa 4297

                                                                        
Query: 533  gtgcatcattcagtggttgtccgttcaactctgagctgctaaaggaaccacccgaggcat 592
             || ||||| ||| ||||| || ||||||||||| ||||||||||| ||||| || ||||
Sbjct: 4296 ttgaatcatccagaggttgcccattcaactctgaactgctaaaggatccaccagatgcat 4237

                                                                        
Query: 593  caccaattgattggcatgattcaaggaaagcattcccacagaaagcaaaatcagcgttgc 652
            |||| ||||| ||||||||||| |||||||||||||| |||||| |||||| | | ||||
Sbjct: 4236 cacctattgactggcatgattccaggaaagcattcccgcagaaaccaaaattaccattgc 4177

                  
Query: 653  tcgaat 658
            ||||||
Sbjct: 4176 tcgaat 4171
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>dbj|AK064803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D12, full
            insert sequence
          Length = 1395

 Score =  222 bits (112), Expect = 1e-54
 Identities = 258/306 (84%), Gaps = 3/306 (0%)
 Strand = Plus / Minus

                                                                        
Query: 353  ctgtatgttctccacctgtagaatctgagaagttatttggctcagatgagagaaatggtg 412
            |||| ||||| ||||||||||||||||| ||||||||| ||||||| | ||| || ||||
Sbjct: 1099 ctgtgtgttcaccacctgtagaatctgaaaagttattttgctcagaagggaggaacggtg 1040

                                                                        
Query: 413  acctgctataattgtccaatacttctgtattttggttgaacccctctgttaagtctgaaa 472
            || ||| ||||||||| |||| ||||||  ||||  ||||  |||||| || ||||||||
Sbjct: 1039 acttgccataattgtctaatatttctgtgctttgactgaaatcctctggtaggtctgaaa 980

                                                                        
Query: 473  aactgaaattccggggaatctggctcaagaagccaaatgacgatgactccatatccaaaa 532
            ||   ||||| ||||||| ||| |||||||||||||| || ||||| || ||||||||||
Sbjct: 979  aa---aaatttcggggaagctgactcaagaagccaaacgatgatgattcaatatccaaaa 923

                                                                        
Query: 533  gtgcatcattcagtggttgtccgttcaactctgagctgctaaaggaaccacccgaggcat 592
             || ||||| ||| ||||| || ||||||||||| ||||||||||| ||||| || ||||
Sbjct: 922  ttgaatcatccagaggttgcccattcaactctgaactgctaaaggatccaccagatgcat 863

                                                                        
Query: 593  caccaattgattggcatgattcaaggaaagcattcccacagaaagcaaaatcagcgttgc 652
            |||| ||||| ||||||||||| |||||||||||||| |||||| |||||| | | ||||
Sbjct: 862  cacctattgactggcatgattccaggaaagcattcccgcagaaaccaaaattaccattgc 803

                  
Query: 653  tcgaat 658
            ||||||
Sbjct: 802  tcgaat 797
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  163 bits (82), Expect = 9e-37
 Identities = 174/204 (85%), Gaps = 3/204 (1%)
 Strand = Plus / Plus

                                                                            
Query: 455      cctctgttaagtctgaaaaactgaaattccggggaatctggctcaagaagccaaatgacg 514
                |||||| || ||||||||||   ||||| ||||||| ||| |||||||||||||| || |
Sbjct: 29282931 cctctggtaggtctgaaaaa---aaatttcggggaagctgactcaagaagccaaacgatg 29282987

                                                                            
Query: 515      atgactccatatccaaaagtgcatcattcagtggttgtccgttcaactctgagctgctaa 574
                |||| || |||||||||| || ||||| ||| ||||| || ||||||||||| |||||||
Sbjct: 29282988 atgattcaatatccaaaattgaatcatccagaggttgcccattcaactctgaactgctaa 29283047

                                                                            
Query: 575      aggaaccacccgaggcatcaccaattgattggcatgattcaaggaaagcattcccacaga 634
                |||| ||||| || |||||||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct: 29283048 aggatccaccagatgcatcacctattgactggcatgattccaggaaagcattcccgcaga 29283107

                                        
Query: 635      aagcaaaatcagcgttgctcgaat 658
                || |||||| | | ||||||||||
Sbjct: 29283108 aaccaaaattaccattgctcgaat 29283131



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                            
Query: 353      ctgtatgttctccacctgtagaatctgagaagttatttggctcagatgagagaaatggtg 412
                |||| ||||| ||||||||||||||||| ||||||||| ||||||| | ||| || ||||
Sbjct: 29282727 ctgtgtgttcaccacctgtagaatctgaaaagttattttgctcagaagggaggaacggtg 29282786

                                           
Query: 413      acctgctataattgtccaatacttctg 439
                || ||| ||||||||| |||| |||||
Sbjct: 29282787 acttgccataattgtctaatatttctg 29282813
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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0018H04
          Length = 142053

 Score =  163 bits (82), Expect = 9e-37
 Identities = 174/204 (85%), Gaps = 3/204 (1%)
 Strand = Plus / Plus

                                                                         
Query: 455   cctctgttaagtctgaaaaactgaaattccggggaatctggctcaagaagccaaatgacg 514
             |||||| || ||||||||||   ||||| ||||||| ||| |||||||||||||| || |
Sbjct: 45729 cctctggtaggtctgaaaaa---aaatttcggggaagctgactcaagaagccaaacgatg 45785

                                                                         
Query: 515   atgactccatatccaaaagtgcatcattcagtggttgtccgttcaactctgagctgctaa 574
             |||| || |||||||||| || ||||| ||| ||||| || ||||||||||| |||||||
Sbjct: 45786 atgattcaatatccaaaattgaatcatccagaggttgcccattcaactctgaactgctaa 45845

                                                                         
Query: 575   aggaaccacccgaggcatcaccaattgattggcatgattcaaggaaagcattcccacaga 634
             |||| ||||| || |||||||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct: 45846 aggatccaccagatgcatcacctattgactggcatgattccaggaaagcattcccgcaga 45905

                                     
Query: 635   aagcaaaatcagcgttgctcgaat 658
             || |||||| | | ||||||||||
Sbjct: 45906 aaccaaaattaccattgctcgaat 45929



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                         
Query: 353   ctgtatgttctccacctgtagaatctgagaagttatttggctcagatgagagaaatggtg 412
             |||| ||||| ||||||||||||||||| ||||||||| ||||||| | ||| || ||||
Sbjct: 45525 ctgtgtgttcaccacctgtagaatctgaaaagttattttgctcagaagggaggaacggtg 45584

                                        
Query: 413   acctgctataattgtccaatacttctg 439
             || ||| ||||||||| |||| |||||
Sbjct: 45585 acttgccataattgtctaatatttctg 45611
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>gb|AY107192.1| Zea mays PCO124577 mRNA sequence
          Length = 1371

 Score =  141 bits (71), Expect = 3e-30
 Identities = 142/165 (86%), Gaps = 3/165 (1%)
 Strand = Plus / Minus

                                                                       
Query: 497 tcaagaagccaaatgacgatgactccatatccaaaagtgcatcattcagtggttgtccgt 556
           ||||||||| |||||||||||| |||||||||| || || ||| || |||||||| ||||
Sbjct: 904 tcaagaagctaaatgacgatgattccatatccagaattgaatcgtttagtggttgcccgt 845

                                                                       
Query: 557 tcaactctgagctgctaaagga---accacccgaggcatcaccaattgattggcatgatt 613
           ||| ||||||||| || |||||   |||||| || ||||| || ||||| ||||| ||||
Sbjct: 844 tcagctctgagctactgaaggatccaccaccagatgcatcgcctattgactggcacgatt 785

                                                        
Query: 614 caaggaaagcattcccacagaaagcaaaatcagcgttgctcgaat 658
           | ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 784 ccaggaaagtattcccacagaaagcaaaatcagcattgctcgaat 740
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>ref|XM_464059.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1722

 Score =  139 bits (70), Expect = 1e-29
 Identities = 208/254 (81%)
 Strand = Plus / Minus

                                                                        
Query: 370  gtagaatctgagaagttatttggctcagatgagagaaatggtgacctgctataattgtcc 429
            ||||| |||||||| |||||||| ||||| | || ||| || || |||| |||||| |||
Sbjct: 1144 gtagactctgagaaattatttggttcagaagggataaaaggggatctgccataattctcc 1085

                                                                        
Query: 430  aatacttctgtattttggttgaacccctctgttaagtctgaaaaactgaaattccgggga 489
            |||| ||||| | ||||| | ||  | || ||||| |||||||||||||||||||| |||
Sbjct: 1084 aatatttctgcactttggctaaagtcttcagttaaatctgaaaaactgaaattccgagga 1025

                                                                        
Query: 490  atctggctcaagaagccaaatgacgatgactccatatccaaaagtgcatcattcagtggt 549
            || ||||||||||| ||||| || ||||| ||||| |||| || || ||||   ||||| 
Sbjct: 1024 atttggctcaagaaaccaaaagatgatgaatccatgtccataattggatcacctagtggc 965

                                                                        
Query: 550  tgtccgttcaactctgagctgctaaaggaaccacccgaggcatcaccaattgattggcat 609
            ||||| |||| ||| |||||||| ||||| ||||| |||||||| |||||||| ||||| 
Sbjct: 964  tgtccattcagctcagagctgctgaaggatccaccagaggcatccccaattgactggcaa 905

                          
Query: 610  gattcaaggaaagc 623
            | ||| ||||||||
Sbjct: 904  ggttctaggaaagc 891
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>dbj|AK073353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025E21, full
            insert sequence
          Length = 1721

 Score =  139 bits (70), Expect = 1e-29
 Identities = 208/254 (81%)
 Strand = Plus / Minus

                                                                        
Query: 370  gtagaatctgagaagttatttggctcagatgagagaaatggtgacctgctataattgtcc 429
            ||||| |||||||| |||||||| ||||| | || ||| || || |||| |||||| |||
Sbjct: 1143 gtagactctgagaaattatttggttcagaagggataaaaggggatctgccataattctcc 1084

                                                                        
Query: 430  aatacttctgtattttggttgaacccctctgttaagtctgaaaaactgaaattccgggga 489
            |||| ||||| | ||||| | ||  | || ||||| |||||||||||||||||||| |||
Sbjct: 1083 aatatttctgcactttggctaaagtcttcagttaaatctgaaaaactgaaattccgagga 1024

                                                                        
Query: 490  atctggctcaagaagccaaatgacgatgactccatatccaaaagtgcatcattcagtggt 549
            || ||||||||||| ||||| || ||||| ||||| |||| || || ||||   ||||| 
Sbjct: 1023 atttggctcaagaaaccaaaagatgatgaatccatgtccataattggatcacctagtggc 964

                                                                        
Query: 550  tgtccgttcaactctgagctgctaaaggaaccacccgaggcatcaccaattgattggcat 609
            ||||| |||| ||| |||||||| ||||| ||||| |||||||| |||||||| ||||| 
Sbjct: 963  tgtccattcagctcagagctgctgaaggatccaccagaggcatccccaattgactggcaa 904

                          
Query: 610  gattcaaggaaagc 623
            | ||| ||||||||
Sbjct: 903  ggttctaggaaagc 890
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>gb|BT024013.1| Zea mays clone EL01N0401G10 mRNA sequence
          Length = 1369

 Score =  137 bits (69), Expect = 5e-29
 Identities = 140/163 (85%), Gaps = 3/163 (1%)
 Strand = Plus / Minus

                                                                       
Query: 497 tcaagaagccaaatgacgatgactccatatccaaaagtgcatcattcagtggttgtccgt 556
           ||||||||| |||||| ||||||||||||||||||| || ||| || |||||||| || |
Sbjct: 927 tcaagaagctaaatgatgatgactccatatccaaaattgaatcgtttagtggttgcccat 868

                                                                       
Query: 557 tcaactctgagctgctaaagga---accacccgaggcatcaccaattgattggcatgatt 613
           |||||||||||||||| |||||   |||||| || |||||||| || || ||||||||||
Sbjct: 867 tcaactctgagctgctgaaggatccaccaccagatgcatcacctatcgactggcatgatt 808

                                                      
Query: 614 caaggaaagcattcccacagaaagcaaaatcagcgttgctcga 656
           | |||||||  ||||||||||| ||||||||||| || |||||
Sbjct: 807 ccaggaaagtgttcccacagaaggcaaaatcagcattactcga 765
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                           
Query: 460     gttaagtctgaaaaactgaaattccggggaatctggctcaagaagccaaatgacgatgac 519
               ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| 
Sbjct: 1970988 gttaaatctgaaaaactgaaattccgaggaatttggctcaagaaaccaaaagatgatgaa 1970929

                                                                           
Query: 520     tccatatccaaaagtgcatcattcagtggttgtccgttcaactctgagctgctaaaggaa 579
               ||||| |||| || || ||||   ||||| ||||| |||| ||| |||||||| ||||| 
Sbjct: 1970928 tccatgtccataattggatcacctagtggctgtccattcagctcagagctgctgaaggat 1970869

                                                           
Query: 580     ccacccgaggcatcaccaattgattggcatgattcaaggaaagc 623
               ||||| |||||||| |||||||| ||||| | ||| ||||||||
Sbjct: 1970868 ccaccagaggcatccccaattgactggcaaggttctaggaaagc 1970825



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                   
Query: 608     atgattcaaggaaagcattcccacagaaagcaaaat 643
               ||||||| ||||||||||||||||||||| ||||||
Sbjct: 5057521 atgattccaggaaagcattcccacagaaaccaaaat 5057486



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 553     ccgttcaactctgagctgctaaaggaaccacc 584
               |||||||||||||| ||||||||||| |||||
Sbjct: 5057563 ccgttcaactctgaactgctaaaggatccacc 5057532
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                         
Query: 460   gttaagtctgaaaaactgaaattccggggaatctggctcaagaagccaaatgacgatgac 519
             ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| 
Sbjct: 21196 gttaaatctgaaaaactgaaattccgaggaatttggctcaagaaaccaaaagatgatgaa 21137

                                                                         
Query: 520   tccatatccaaaagtgcatcattcagtggttgtccgttcaactctgagctgctaaaggaa 579
             ||||| |||| || || ||||   ||||| ||||| |||| ||| |||||||| ||||| 
Sbjct: 21136 tccatgtccataattggatcacctagtggctgtccattcagctcagagctgctgaaggat 21077

                                                         
Query: 580   ccacccgaggcatcaccaattgattggcatgattcaaggaaagc 623
             ||||| |||||||| |||||||| ||||| | ||| ||||||||
Sbjct: 21076 ccaccagaggcatccccaattgactggcaaggttctaggaaagc 21033
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score =  119 bits (60), Expect = 1e-23
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                          
Query: 460    gttaagtctgaaaaactgaaattccggggaatctggctcaagaagccaaatgacgatgac 519
              ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| 
Sbjct: 110549 gttaaatctgaaaaactgaaattccgaggaatttggctcaagaaaccaaaagatgatgaa 110490

                                                                          
Query: 520    tccatatccaaaagtgcatcattcagtggttgtccgttcaactctgagctgctaaaggaa 579
              ||||| |||| || || ||||   ||||| ||||| |||| ||| |||||||| ||||| 
Sbjct: 110489 tccatgtccataattggatcacctagtggctgtccattcagctcagagctgctgaaggat 110430

                                                          
Query: 580    ccacccgaggcatcaccaattgattggcatgattcaaggaaagc 623
              ||||| |||||||| |||||||| ||||| | ||| ||||||||
Sbjct: 110429 ccaccagaggcatccccaattgactggcaaggttctaggaaagc 110386
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>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0031B09
          Length = 132729

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 608    atgattcaaggaaagcattcccacagaaagcaaaat 643
              ||||||| ||||||||||||||||||||| ||||||
Sbjct: 128647 atgattccaggaaagcattcccacagaaaccaaaat 128612



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 553    ccgttcaactctgagctgctaaaggaaccacc 584
              |||||||||||||| ||||||||||| |||||
Sbjct: 128689 ccgttcaactctgaactgctaaaggatccacc 128658
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>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 608   atgattcaaggaaagcattcccacagaaagcaaaat 643
             ||||||| ||||||||||||||||||||| ||||||
Sbjct: 18019 atgattccaggaaagcattcccacagaaaccaaaat 17984



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 553   ccgttcaactctgagctgctaaaggaaccacc 584
             |||||||||||||| ||||||||||| |||||
Sbjct: 18061 ccgttcaactctgaactgctaaaggatccacc 18030
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>gb|AC055758.23| Homo sapiens 3 BAC RP11-88H10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 173456

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 618  gaaagcattcccacagaaagc 638
            |||||||||||||||||||||
Sbjct: 1008 gaaagcattcccacagaaagc 988
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>gb|AC092976.5| Homo sapiens 3q BAC RP11-297C5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 44051

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 618   gaaagcattcccacagaaagc 638
             |||||||||||||||||||||
Sbjct: 43055 gaaagcattcccacagaaagc 43035
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>gb|AC078957.16| Homo sapiens Xp BAC RP11-339E16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 198088

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 264    gttctccatgaatatgtacaa 284
              |||||||||||||||||||||
Sbjct: 117197 gttctccatgaatatgtacaa 117177
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>emb|Z24357.1|HS319ZF1 H. sapiens (D3S1608) DNA segment containing (CA) repeat; clone
           AFM319zf1; single read
          Length = 346

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 618 gaaagcattcccacagaaagc 638
           |||||||||||||||||||||
Sbjct: 39  gaaagcattcccacagaaagc 59
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>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence
          Length = 208850

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     atcttacagccacaacatca 111
              ||||||||||||||||||||
Sbjct: 113656 atcttacagccacaacatca 113637
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>gb|AY329623.1| Mus musculus cellular nucleic acid binding protein (Cnbp) gene,
            complete cds
          Length = 8035

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  ttaagtctgaaaaactgaaa 480
            ||||||||||||||||||||
Sbjct: 1540 ttaagtctgaaaaactgaaa 1559
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>gb|AY329615.1| Mus musculus Cnbp gene, intron 1 and DM2 repeat region
          Length = 5127

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  ttaagtctgaaaaactgaaa 480
            ||||||||||||||||||||
Sbjct: 1344 ttaagtctgaaaaactgaaa 1363
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>gb|AC094900.9| Rattus norvegicus 4 BAC CH230-6J7 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 79001

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   ttggaactaacaagggaaaa 241
             ||||||||||||||||||||
Sbjct: 20302 ttggaactaacaagggaaaa 20321
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>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete
             sequence
          Length = 174545

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 587   aggcatcaccaattgattggcatg 610
             ||||||| ||||||||||||||||
Sbjct: 51424 aggcatctccaattgattggcatg 51447
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>gb|AC129023.4| Mus musculus BAC clone RP23-430E12 from chromosome 18, complete
           sequence
          Length = 185832

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 262 aagttctccatgaatatgtacaaa 285
           |||||||||||||| |||||||||
Sbjct: 210 aagttctccatgaaaatgtacaaa 187
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>gb|AC092788.3| Homo sapiens BAC clone RP11-333G13 from 7, complete sequence
          Length = 42544

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 261  caagttctccatgaatatgtacaa 284
            ||||| ||||||||||||||||||
Sbjct: 8312 caagtactccatgaatatgtacaa 8289
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>gb|AC146851.1| Human Herpesvirus 5 Towne-BAC isolate, complete sequence
          Length = 229483

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tcatcccatactgttacatt 213
             ||||||||||||||||||||
Sbjct: 27849 tcatcccatactgttacatt 27830
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>gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosome 18, complete sequence
          Length = 142347

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    aagttctccatgaatatgtacaaa 285
              |||||||||||||| |||||||||
Sbjct: 103259 aagttctccatgaaaatgtacaaa 103236
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>gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, complete sequence
          Length = 195428

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aaggcaggcacaactacaat 137
              ||||||||||||||||||||
Sbjct: 124387 aaggcaggcacaactacaat 124406
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>gb|AC126695.4| Mus musculus BAC clone RP23-313D2 from 18, complete sequence
          Length = 171427

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    atgaaagttgctcaagttct 268
              ||||||||||||||||||||
Sbjct: 142352 atgaaagttgctcaagttct 142371
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>emb|AL355358.9| Human DNA sequence from clone RP11-536L15 on chromosome 6 Contains a
              ribosomal protein S29 (RPS29) pseudogene, complete sequence
          Length = 141825

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    ctccatgaatatgtacaaaa 286
              ||||||||||||||||||||
Sbjct: 117954 ctccatgaatatgtacaaaa 117935
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>emb|BX548247.6| Zebrafish DNA sequence from clone DKEY-177G18 in linkage group 23,
              complete sequence
          Length = 180406

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    agaatctgagaagttatttg 391
              ||||||||||||||||||||
Sbjct: 160856 agaatctgagaagttatttg 160837
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>gb|AC104333.2| Homo sapiens chromosome 1 clone RP11-348H3, complete sequence
          Length = 162984

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gggtagctgctcagcctgca 310
             ||||||||||||||||||||
Sbjct: 36578 gggtagctgctcagcctgca 36559
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>gb|AC103921.2| Homo sapiens chromosome 3 clone RP11-131O21, complete sequence
          Length = 156264

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   ctgttaagtctgaaaaactg 477
             ||||||||||||||||||||
Sbjct: 47820 ctgttaagtctgaaaaactg 47839
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>gb|AC103587.2| Homo sapiens chromosome 3 clone RP11-164G20, complete sequence
          Length = 133921

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   ctgttaagtctgaaaaactg 477
             ||||||||||||||||||||
Sbjct: 91349 ctgttaagtctgaaaaactg 91368
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>gb|AC090736.5| Homo sapiens chromosome 8, clone RP11-1126C1, complete sequence
          Length = 145832

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    aatacttctgtattttggtt 449
              ||||||||||||||||||||
Sbjct: 127257 aatacttctgtattttggtt 127276
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>gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 240079

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   ttaagtctgaaaaactgaaa 480
             ||||||||||||||||||||
Sbjct: 13885 ttaagtctgaaaaactgaaa 13904
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>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence
          Length = 180084

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   cagcctgcaggcacagcatg 321
             ||||||||||||||||||||
Sbjct: 39411 cagcctgcaggcacagcatg 39430
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>gb|AY176064.1| Mus musculus cellular nucleic acid binding protein (Cnbp) gene,
            complete cds
          Length = 12191

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 461  ttaagtctgaaaaactgaaa 480
            ||||||||||||||||||||
Sbjct: 4737 ttaagtctgaaaaactgaaa 4756
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>gb|AC020603.4|AC020603 Homo sapiens BAC clone RP11-534K13 from 8, complete sequence
          Length = 202317

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   aatacttctgtattttggtt 449
             ||||||||||||||||||||
Sbjct: 28913 aatacttctgtattttggtt 28932
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>gb|AC153872.2| Mus musculus 6 BAC RP23-226O20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 203418

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   ttaagtctgaaaaactgaaa 480
             ||||||||||||||||||||
Sbjct: 30936 ttaagtctgaaaaactgaaa 30917
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>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence
          Length = 185193

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 449    tgaacccctctgttaagtct 468
              ||||||||||||||||||||
Sbjct: 112519 tgaacccctctgttaagtct 112500
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>gb|AC008304.3|AC008304 Drosophila melanogaster, chromosome 2R, region 59D2-59D3, BAC clone
             BACR04G19, complete sequence
          Length = 181955

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 590   catcaccaattgattggcat 609
             ||||||||||||||||||||
Sbjct: 54630 catcaccaattgattggcat 54611
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>gb|AC079807.5| Homo sapiens BAC clone RP11-760G15 from 2, complete sequence
          Length = 156175

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   tcccacagaaagcaaaatca 645
             ||||||||||||||||||||
Sbjct: 20131 tcccacagaaagcaaaatca 20150
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>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence
          Length = 191731

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 449  tgaacccctctgttaagtct 468
            ||||||||||||||||||||
Sbjct: 1956 tgaacccctctgttaagtct 1937
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>gb|AC012500.7| Homo sapiens BAC clone RP11-434M17 from 2, complete sequence
          Length = 117763

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   aatctggctcaagaagccaa 508
             ||||||||||||||||||||
Sbjct: 77690 aatctggctcaagaagccaa 77709
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>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete
             sequence
          Length = 198653

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   tgtagaatctgagaagttat 388
             ||||||||||||||||||||
Sbjct: 43518 tgtagaatctgagaagttat 43537
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 451    aacccctctgttaagtctgaaaaa 474
              |||||||||||||||| |||||||
Sbjct: 767698 aacccctctgttaagtttgaaaaa 767675
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    atgaaagttgctcaagttctccat 272
              |||||||||||||| |||||||||
Sbjct: 896192 atgaaagttgctcacgttctccat 896169
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>emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chromosome 1, complete
             sequence
          Length = 173609

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   gggtagctgctcagcctgca 310
             ||||||||||||||||||||
Sbjct: 19158 gggtagctgctcagcctgca 19177
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>emb|Z92833.1|CEF38A6 Caenorhabditis elegans Cosmid F38A6, complete sequence
          Length = 36256

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 251  gaaagttgctcaagttctccatga 274
            ||||||||||||||||||| ||||
Sbjct: 3468 gaaagttgctcaagttctctatga 3445
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>gb|AE003460.2| Drosophila melanogaster chromosome 2R, section 68 of 73 of the complete
              sequence
          Length = 299331

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 590    catcaccaattgattggcat 609
              ||||||||||||||||||||
Sbjct: 107107 catcaccaattgattggcat 107088
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>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence
          Length = 208909

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 590    catcaccaattgattggcatgattcaag 617
              |||||||||||||| ||||||| |||||
Sbjct: 147499 catcaccaattgatgggcatgactcaag 147472


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,633,555
Number of Sequences: 3902068
Number of extensions: 5633555
Number of successful extensions: 98609
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98404
Number of HSP's gapped (non-prelim): 201
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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