ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30n08 |
|---|---|
| Clone Library Name | barley_pub |
>STP2_HUMAN (Q05952) Nuclear transition protein 2 (TP-2) (TP2)| Length = 138 Score = 35.0 bits (79), Expect = 0.13 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +3 Query: 279 SSKGPCC*RHPEAHQNSEGYQSAHPRHHP*ETSSKVQNRQHCSP*QEAPLSCRC 440 SS+ P R+P +S G+QS P P K H SP + L CRC Sbjct: 49 SSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSPMRPTILHCRC 102
>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 33.1 bits (74), Expect = 0.50 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +3 Query: 258 HRWACHRSS-KGPCC*RHPEAHQNSEGYQSAHPRHHP*ETSSKVQNRQHCSP*QEAPLSC 434 HR + RSS + P R+P +S G+QS P P K H SP + L C Sbjct: 41 HRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSPRRPTILHC 100 Query: 435 RC 440 C Sbjct: 101 SC 102
>STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 32.7 bits (73), Expect = 0.66 Identities = 18/54 (33%), Positives = 23/54 (42%) Frame = +3 Query: 279 SSKGPCC*RHPEAHQNSEGYQSAHPRHHP*ETSSKVQNRQHCSP*QEAPLSCRC 440 SS+ P R+P +S G+QS P P K H SP + L C C Sbjct: 49 SSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSPMRPTILHCSC 102
>ABCC8_CRICR (Q09427) ATP-binding cassette transporter sub-family C member 8| (Sulfonylurea receptor 1) Length = 1581 Score = 32.3 bits (72), Expect = 0.86 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Frame = -1 Query: 410 WRTMLSILNLGRGFLWMMAWMSRLIAF*ILMCLRMSLATWTFGASVTCPSVANFSRDSNP 231 WR L+ L + S+L+ +L+ + LA WT A V P+ N S S Sbjct: 997 WRACTKYLSSAGILLLSLLVFSQLLKHMVLVAIDYWLAKWTDSALVLSPAARNCSL-SQE 1055 Query: 230 CISGQRE*DYGRLGSTLLSTSAIICLCPSLD--------AKKLHPESLL*STLFLADCR 78 C Q Y + + L S ++CL S+ AK+LH SLL + + LA R Sbjct: 1056 CDLDQSV--YAMVFTLLCSLGIVLCLVTSVTVEWTGLKVAKRLH-RSLL-NRIILAPMR 1110
>ABCC8_HUMAN (Q09428) ATP-binding cassette transporter sub-family C member 8| (Sulfonylurea receptor 1) Length = 1580 Score = 32.0 bits (71), Expect = 1.1 Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Frame = -1 Query: 410 WRTMLSILNLGRGFLWMMAWMSRLIAF*ILMCLRMSLATWTFGASVTCPSVANFSRDSNP 231 WR L+ L + S+L+ +L+ + LA WT A P+ N S S Sbjct: 996 WRACAKYLSSAGILLLSLLVFSQLLKHMVLVAIDYWLAKWTDSALTLTPAARNCSL-SQE 1054 Query: 230 CISGQRE*DYGRLGSTLLSTSAIICLCPSLD--------AKKLHPESLL*STLFLADCR 78 C Q Y + + L S ++CL S+ AK+LH SLL + + LA R Sbjct: 1055 CTLDQTV--YAMVFTVLCSLGIVLCLVTSVTVEWTGLKVAKRLH-RSLL-NRIILAPMR 1109
>ABCC8_RAT (Q09429) ATP-binding cassette transporter sub-family C member 8| (Sulfonylurea receptor 1) Length = 1581 Score = 32.0 bits (71), Expect = 1.1 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Frame = -1 Query: 410 WRTMLSILNLGRGFLWMMAWMSRLIAF*ILMCLRMSLATWTFGASVTCPSVANFSRDSNP 231 WR L+ L + S+L+ +L+ + LA WT A V P+ N S S Sbjct: 997 WRACTKYLSSAGILLLSLLVFSQLLKHMVLVAIDYWLAKWTDSALVLSPAARNCSL-SQE 1055 Query: 230 CISGQRE*DYGRLGSTLLSTSAIICLCPSLD--------AKKLHPESLL*STLFLADCR 78 C Q Y + + L S +CL S+ AK+LH SLL + + LA R Sbjct: 1056 CALDQSV--YAMVFTVLCSLGIALCLVTSVTVEWTGLKVAKRLH-RSLL-NRIILAPMR 1110
>STP2_PONPY (Q9N1A4) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 138 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/62 (30%), Positives = 25/62 (40%) Frame = +3 Query: 255 RHRWACHRSSKGPCC*RHPEAHQNSEGYQSAHPRHHP*ETSSKVQNRQHCSP*QEAPLSC 434 R W+ SS+ P +P +S G+QS P P K H SP + L C Sbjct: 47 RGSWS-QNSSQSPASHHNPTGAHSSSGHQSQSPNDSPPPKRHKKTMNSHHSPTRPTILHC 105 Query: 435 RC 440 C Sbjct: 106 SC 107
>YS02_CAEEL (Q09357) Hypothetical UPF0049 protein ZK1128.2 in chromosome III| Length = 479 Score = 30.4 bits (67), Expect = 3.3 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = -1 Query: 524 MRPRLQIYHPLLPFPPLLKEQNLRLSRATPTTQWCLLLWRTMLSILNLGRGFLWMMAW 351 +R R++IY ++ LK RL R + M+S+LN G+ WM+AW Sbjct: 251 LRDRIKIYTTMIGRKSSLKPLQNRLQRFGDDV-------KIMISVLNQGKTKRWMLAW 301
>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 30.4 bits (67), Expect = 3.3 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Frame = +3 Query: 258 HRWACHRSS-KGPCC*RHPEAHQNSEGYQSAHPRHHP*ETSSKVQNRQHCSP*QEAPLSC 434 HR + RSS + P R+P +S G+QS P P K H SP L C Sbjct: 41 HRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSP-MRPTLHC 99 Query: 435 RC 440 C Sbjct: 100 SC 101
>ABCC9_MOUSE (P70170) ATP-binding cassette transporter sub-family C member 9| (Sulfonylurea receptor 2) Length = 1546 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 410 WRTMLSILNLGRGFLWMMAWMSRLIAF*ILMCLRMSLATWTFGASVTCPSVAN 252 W+T L G FL + S+L+ +++ + LATWT S+ P A+ Sbjct: 976 WKTCWWYLTSGGFFLLFLMIFSKLLKHSVIVAIDYWLATWTSEYSINHPGKAD 1028
>ABCC9_RAT (Q63563) ATP-binding cassette transporter sub-family C member 9| (Sulfonylurea receptor 2) Length = 1545 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 410 WRTMLSILNLGRGFLWMMAWMSRLIAF*ILMCLRMSLATWTFGASVTCPSVAN 252 W+T L G FL + S+L+ +++ + LATWT S+ P A+ Sbjct: 975 WKTCWWYLTSGGFFLLFLMIFSKLLKHSVIVAIDYWLATWTSEYSINDPGKAD 1027
>HRPA_HAEIN (P45018) ATP-dependent RNA helicase hrpA homolog (EC 3.6.1.-)| Length = 1304 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -3 Query: 375 RFLMDDGVDEPIDSLLNFDVPQDVVSNMDLWSFGDMPICGE 253 +F + D V E I ++ + + Q S + +WSF D+P C E Sbjct: 999 KFNLKDRVQESISAVADDGIEQ---SGLHIWSFADLPQCYE 1036
>ERA_AQUAE (O67800) GTP-binding protein era homolog| Length = 301 Score = 29.3 bits (64), Expect = 7.3 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Frame = -3 Query: 516 KTPDISSVAPISTIAEGAESALIQSNT-YNSVVPPVMENNAVDFEPWTRFLMDDGVDEPI 340 K P+++ + PIS + L+++ Y P+ + + P R L + V E Sbjct: 144 KHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLP-LRLLAAEIVREKA 202 Query: 339 DSLLNFDVPQDVVSNMDLWSFGD-----MPICGEFF*---GFKPLYIRTKGMRLWEIGK 187 L +VP + ++ GD + I GE KP+ I KG RL EIGK Sbjct: 203 MMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGK 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,638,548 Number of Sequences: 219361 Number of extensions: 1665738 Number of successful extensions: 4210 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4072 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4206 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
