ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018826.1| Zea mays clone EL01N0551B03.d mRNA sequence 60 8e-06
2gb|AY581836.1| Cynodon dactylon putative transcription factor ER... 60 8e-06
3gb|AY103951.1| Zea mays PCO106933 mRNA sequence 60 8e-06
4gb|AY108380.1| Zea mays PCO095978 mRNA sequence 58 3e-05
5ref|XM_468125.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
6ref|XM_507539.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
7ref|XM_507538.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
8ref|XM_507013.2| PREDICTED Oryza sativa (japonica cultivar-group... 56 1e-04
9gb|AF193803.1| Oryza sativa transcription factor EREBP1 mRNA, co... 56 1e-04
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
12dbj|AP004280.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
13dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
14dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
15dbj|AK119885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
16dbj|AK119643.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
17dbj|AK103783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
18dbj|AK069833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
19gb|AF190770.1|AF190770 Oryza sativa EREBP-like protein (tsh1) mR... 56 1e-04
20dbj|AK064027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
21dbj|AK060742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
22ref|XM_472870.1| Oryza sativa (japonica cultivar-group), predic... 40 7.3
23gb|AC146127.4| Pan troglodytes BAC clone RP43-23F10 from 7, comp... 40 7.3
24gb|AC110219.11| Mus musculus chromosome 1, clone RP24-541P18, co... 40 7.3
25gb|AC146006.2| Pan troglodytes BAC clone RP43-165A19 from 7, com... 40 7.3
26gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome... 40 7.3
27gb|AC146483.2| Pan troglodytes BAC clone RP43-30K12 from 7, comp... 40 7.3
28emb|AL662928.4| Human DNA sequence from clone RP11-92H11 on chro... 40 7.3
29gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.3
30ref|XM_794193.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.3
31emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4,... 40 7.3
32dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 7.3
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
34gb|AC110078.2| Homo sapiens BAC clone RP11-358N5 from 2, complet... 40 7.3
35emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on ch... 40 7.3
36ref|XM_555284.1| Anopheles gambiae str. PEST ENSANGP00000027134 ... 40 7.3
37dbj|AK101478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
38dbj|AK065827.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
39gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, comple... 40 7.3
40gb|AC146753.1| Gallus gallus BAC clone CH261-4N19 from chromosom... 40 7.3 
>gb|BT018826.1| Zea mays clone EL01N0551B03.d mRNA sequence
          Length = 1835

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 263  atgggcatgtcaccgaagctccaaaggtccatgttgct 300
            |||||||||||  |||||||||||||||||||||||||
Sbjct: 1258 atgggcatgtcctcgaagctccaaaggtccatgttgct 1221
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>gb|AY581836.1| Cynodon dactylon putative transcription factor EREBP1 mRNA, partial
           cds
          Length = 330

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 263 atgggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
           |||||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 78  atgggcatgtcatcaaagctccagaggtccatgttgctgactacatcctg 29
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>gb|AY103951.1| Zea mays PCO106933 mRNA sequence
          Length = 2052

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 263  atgggcatgtcaccgaagctccaaaggtccatgttgct 300
            |||||||||||  |||||||||||||||||||||||||
Sbjct: 1254 atgggcatgtcctcgaagctccaaaggtccatgttgct 1217
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>gb|AY108380.1| Zea mays PCO095978 mRNA sequence
          Length = 834

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 262 gatgggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatc 321
           ||||||||||||| ||||| |||| |||||||| |||||| | | |||||| |   ||||
Sbjct: 500 gatgggcatgtcatcgaaggtccagaggtccatattgctaccaagatcctgtgatccatc 441

                                
Query: 322 aaaattcagaaggctatcaat 342
           ||  |||||||||||||||||
Sbjct: 440 aaggttcagaaggctatcaat 420



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                       
Query: 467 ccttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatag 526
           ||||||||||| |||| ||||||||||| |||||  || ||||| ||||| || ||||  
Sbjct: 274 ccttcagcaatagtgggaatgggagcaatggatgtgatgtctggtgtcttagtatcattc 215

                     
Query: 527 tcccagccca 536
           ||||||||||
Sbjct: 214 tcccagccca 205



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 395 acagcattgttctccataacaggaggcacca 425
           ||||||||||||||||  |||||||||||||
Sbjct: 346 acagcattgttctccaggacaggaggcacca 316
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>ref|XM_468125.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1484

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1148 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1101



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 468 cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
           ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 939 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 880

                  
Query: 528 cccagcc 534
           |||||||
Sbjct: 879 cccagcc 873
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>ref|XM_507539.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1585

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1241 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1194



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 468  cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
            ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 1032 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 973

                   
Query: 528  cccagcc 534
            |||||||
Sbjct: 972  cccagcc 966
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>ref|XM_507538.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1687

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1243 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1196



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 468  cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
            ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 1034 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 975

                   
Query: 528  cccagcc 534
            |||||||
Sbjct: 974  cccagcc 968
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>ref|XM_507013.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1602

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1145 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1098



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 468 cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
           ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 936 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 877

                  
Query: 528 cccagcc 534
           |||||||
Sbjct: 876 cccagcc 870
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>gb|AF193803.1| Oryza sativa transcription factor EREBP1 mRNA, complete cds
          Length = 1612

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1176 gggcatgtcatcaaagctccataggtccatgttgctgacaacatcctg 1129



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 468 cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
           ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 967 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 908

                  
Query: 528 cccagcc 534
           |||||||
Sbjct: 907 cccagcc 901
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                           
Query: 265     gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 324
               |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 4744115 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 4744056

                                           
Query: 325     attcagaaggctatcaatcggctcatcc 352
                 |||||||| | ||||||| |||||||
Sbjct: 4744055 gctcagaagggtgtcaatcgactcatcc 4744028
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 265      gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
                |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 33218835 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 33218882



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                            
Query: 468      cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
                ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 33219044 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 33219103

                       
Query: 528      cccagcc 534
                |||||||
Sbjct: 33219104 cccagcc 33219110
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>dbj|AP004280.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0648E08
          Length = 135175

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                         
Query: 265   gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 324
             |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 19519 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 19460

                                         
Query: 325   attcagaaggctatcaatcggctcatcc 352
               |||||||| | ||||||| |||||||
Sbjct: 19459 gctcagaagggtgtcaatcgactcatcc 19432
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>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0698A06
          Length = 156514

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                          
Query: 265    gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 324
              |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 106714 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 106655

                                          
Query: 325    attcagaaggctatcaatcggctcatcc 352
                |||||||| | ||||||| |||||||
Sbjct: 106654 gctcagaagggtgtcaatcgactcatcc 106627
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>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1311_D08
          Length = 163702

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 265   gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
             |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 48144 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 48191



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                         
Query: 468   cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
             ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 48353 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 48412

                    
Query: 528   cccagcc 534
             |||||||
Sbjct: 48413 cccagcc 48419
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>dbj|AK119885.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-H02, full
            insert sequence
          Length = 1484

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1148 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1101



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 468 cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
           ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 939 cttcagctatggttgaaatgggagcaattgatgtaatatctggcgtcttggtatcattct 880

                  
Query: 528 cccagcc 534
           |||||||
Sbjct: 879 cccagcc 873
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>dbj|AK119643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F11, full
            insert sequence
          Length = 1587

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1242 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1195



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 468  cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
            ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 1033 cttcagctatggtcgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 974

                   
Query: 528  cccagcc 534
            |||||||
Sbjct: 973  cccagcc 967
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>dbj|AK103783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145H23, full
            insert sequence
          Length = 1689

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1244 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1197



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 468  cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
            ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 1035 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 976

                   
Query: 528  cccagcc 534
            |||||||
Sbjct: 975  cccagcc 969
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>dbj|AK069833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031B06, full
            insert sequence
          Length = 1677

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 324
            |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 1149 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 1090

                                        
Query: 325  attcagaaggctatcaatcggctcatcc 352
              |||||||| | ||||||| |||||||
Sbjct: 1089 gctcagaagggtgtcaatcgactcatcc 1062
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>gb|AF190770.1|AF190770 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds
          Length = 1597

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 324
            |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 1162 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 1103

                                        
Query: 325  attcagaaggctatcaatcggctcatcc 352
              |||||||| | ||||||| |||||||
Sbjct: 1102 gctcagaagggtgtcaatcgactcatcc 1075
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>dbj|AK064027.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B02, full
            insert sequence
          Length = 1603

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctg 312
            |||||||||| | |||||||| |||||||||||||| || ||||||||
Sbjct: 1146 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1099



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 468 cttcagcaatggtggaaatgggagcaacggatgatatatctggagtcttggtctcatagt 527
           ||||||| ||||| |||||||||||||  ||||  |||||||| |||||||| ||||  |
Sbjct: 937 cttcagctatggttgaaatgggagcaattgatgtaatatctggtgtcttggtatcattct 878

                  
Query: 528 cccagcc 534
           |||||||
Sbjct: 877 cccagcc 871
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>dbj|AK060742.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-E01, full
            insert sequence
          Length = 1591

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  gggcatgtcaccgaagctccaaaggtccatgttgctaacgacatcctgaggcacatcaaa 324
            |||||||||| |||||||||||||||||||| | ||  | ||||||||||   ||||| |
Sbjct: 1188 gggcatgtcatcgaagctccaaaggtccatgctactggccacatcctgagatccatcaga 1129

                                        
Query: 325  attcagaaggctatcaatcggctcatcc 352
              |||||||| | ||||||| |||||||
Sbjct: 1128 gctcagaagggtgtcaatcgactcatcc 1101
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>ref|XM_472870.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2412

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 479  gtggaaatgggagcaacgga 498
            ||||||||||||||||||||
Sbjct: 1936 gtggaaatgggagcaacgga 1955
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>gb|AC146127.4| Pan troglodytes BAC clone RP43-23F10 from 7, complete sequence
          Length = 190149

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aaaagggttgattacaaaag 113
             ||||||||||||||||||||
Sbjct: 46674 aaaagggttgattacaaaag 46693
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>gb|AC110219.11| Mus musculus chromosome 1, clone RP24-541P18, complete sequence
          Length = 193614

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 512    gtcttggtctcatagtccca 531
              ||||||||||||||||||||
Sbjct: 107050 gtcttggtctcatagtccca 107069
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>gb|AC146006.2| Pan troglodytes BAC clone RP43-165A19 from 7, complete sequence
          Length = 211780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aaaagggttgattacaaaag 113
              ||||||||||||||||||||
Sbjct: 193392 aaaagggttgattacaaaag 193373
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>gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome 14, complete sequence
          Length = 201412

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   cttggacataagcatatgat 164
             ||||||||||||||||||||
Sbjct: 35463 cttggacataagcatatgat 35482
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>gb|AC146483.2| Pan troglodytes BAC clone RP43-30K12 from 7, complete sequence
          Length = 208066

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     aaaagggttgattacaaaag 113
              ||||||||||||||||||||
Sbjct: 111018 aaaagggttgattacaaaag 111037
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>emb|AL662928.4| Human DNA sequence from clone RP11-92H11 on chromosome 1, complete
             sequence
          Length = 88568

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 154   aagcatatgatagccgaagttgac 177
             ||||| ||||||||||||||||||
Sbjct: 18170 aagcaaatgatagccgaagttgac 18193
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 206     ctcattccctttgtcctgat 225
               ||||||||||||||||||||
Sbjct: 1474984 ctcattccctttgtcctgat 1475003
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>ref|XM_794193.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4329-PA,
            isoform A (LOC594764), partial mRNA
          Length = 2643

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 463  tgctccttcagcaatggtgg 482
            ||||||||||||||||||||
Sbjct: 1363 tgctccttcagcaatggtgg 1382
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>emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21,
              complete sequence
          Length = 160155

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    gtggaaatgggagcaacgga 498
              ||||||||||||||||||||
Sbjct: 149103 gtggaaatgggagcaacgga 149122
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    caacggatgatatatctgga 511
              ||||||||||||||||||||
Sbjct: 136925 caacggatgatatatctgga 136906
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 479      gtggaaatgggagcaacgga 498
                ||||||||||||||||||||
Sbjct: 23828191 gtggaaatgggagcaacgga 23828210
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>gb|AC110078.2| Homo sapiens BAC clone RP11-358N5 from 2, complete sequence
          Length = 196117

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    aatggtggaaatgggagcaa 494
              ||||||||||||||||||||
Sbjct: 172574 aatggtggaaatgggagcaa 172555
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>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete
              sequence
          Length = 219412

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    caggaggcaccactgagttg 433
              ||||||||||||||||||||
Sbjct: 196418 caggaggcaccactgagttg 196437
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>ref|XM_555284.1| Anopheles gambiae str. PEST ENSANGP00000027134 (ENSANGG00000022064),
            partial mRNA
          Length = 2565

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 455  gcagattctgctccttcagc 474
            ||||||||||||||||||||
Sbjct: 2482 gcagattctgctccttcagc 2463
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>dbj|AK101478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041A08, full
            insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 479  gtggaaatgggagcaacgga 498
            ||||||||||||||||||||
Sbjct: 2277 gtggaaatgggagcaacgga 2296
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>dbj|AK065827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040A22, full
            insert sequence
          Length = 3111

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 479  gtggaaatgggagcaacgga 498
            ||||||||||||||||||||
Sbjct: 2212 gtggaaatgggagcaacgga 2231
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>gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, complete sequence
          Length = 163269

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  cttggacataagcatatgat 164
            ||||||||||||||||||||
Sbjct: 2926 cttggacataagcatatgat 2907
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>gb|AC146753.1| Gallus gallus BAC clone CH261-4N19 from chromosome unknown, complete
              sequence
          Length = 231376

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    cattgttctccataacagga 418
              ||||||||||||||||||||
Sbjct: 213419 cattgttctccataacagga 213438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,257,502
Number of Sequences: 3902068
Number of extensions: 4257502
Number of successful extensions: 68400
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68221
Number of HSP's gapped (non-prelim): 178
length of query: 536
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 513
effective length of database: 17,143,297,704
effective search space: 8794511722152
effective search space used: 8794511722152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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