ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30n05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK119574.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 1e-81
2dbj|AK069706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 311 1e-81
3ref|XM_481414.1| Oryza sativa (japonica cultivar-group), mRNA 299 4e-78
4gb|AY108443.1| Zea mays PCO082434 mRNA sequence 299 4e-78
5gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome... 143 5e-31
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
7dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
8ref|NM_121148.1| Arabidopsis thaliana unknown protein AT5G11100 ... 68 3e-08
9emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC... 68 3e-08
10ref|NM_100429.1| Arabidopsis thaliana unknown protein AT1G05500 ... 56 1e-04
11gb|BT008907.1| Arabidopsis thaliana At1g05500 mRNA, complete cds 56 1e-04
12gb|AY140038.1| Arabidopsis thaliana Ca2+-dependent lipid-binding... 56 1e-04
13gb|BT013623.1| Lycopersicon esculentum clone 132425F, mRNA sequence 50 0.006
14gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana... 48 0.024
15gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genom... 48 0.024
16ref|XM_474098.1| Oryza sativa (japonica cultivar-group), predic... 44 0.37
17gb|AC069435.19| Homo sapiens 3 BAC RP11-384L1 (Roswell Park Canc... 44 0.37
18gb|AC135230.8| Medicago truncatula clone mth2-23e14, complete se... 42 1.5
19gb|AC137829.23| Medicago truncatula clone mth2-34j5, complete se... 42 1.5
20emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22dbj|AK062763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
23emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.5
24emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
25gb|AC169511.1| Mus musculus BAC clone RP23-81P24 from chromosome... 40 5.8
26gb|AF509496.1| Chlamydomonas reinhardtii strain CC-125 putative ... 40 5.8
27emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 ... 40 5.8
28gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CI... 40 5.8
29gb|AC159647.2| Mus musculus BAC clone RP23-66A14 from chromosome... 40 5.8
30gb|AF509497.1| Chlamydomonas reinhardtii strain C-9 putative amt... 40 5.8
31gb|AC156568.3| Mus musculus BAC clone RP23-291D3 from chromosome... 40 5.8
32gb|AC090497.2|AC090497 Homo sapiens chromosome 7 clone RP11-643E... 40 5.8
33gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, comp... 40 5.8
34gb|AC083862.2|AC083862 Homo sapiens chromosome 7 clone RP11-134L... 40 5.8
35emb|AJ000238.1|HVJ000238 Hordeum vulgare mRNA for expressed sequ... 40 5.8
36emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.8
37gb|AF148956.1|AF148956 Oryctolagus cuniculus lens-specific calpa... 40 5.8 
>dbj|AK119574.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B03, full
            insert sequence
          Length = 2075

 Score =  311 bits (157), Expect = 1e-81
 Identities = 267/304 (87%)
 Strand = Plus / Minus

                                                                        
Query: 128  tacacaggtttcactgatccctgtcacgatcacggtaaattggctgtgccgtccatttga 187
            ||||||| |||||||| ||||  ||||||||||| ||||||||||| | |||||| ||||
Sbjct: 1904 tacacagatttcactggtcccgatcacgatcacgataaattggctgcggcgtccacttga 1845

                                                                        
Query: 188  agtgcaggttcagccttccagatttagcaccttgcagcgcatatgtatcttggaactcac 247
            |||||| ||||||| |||| ||||||||||||||||   || |   ||| || ||||| |
Sbjct: 1844 agtgcaagttcagctttccggatttagcaccttgcaaaacaaactcatcctgaaactcgc 1785

                                                                        
Query: 248  cttcaagtatcgctctggtaagtgtcaagatgcatctccctatgtaatcctttccaaatg 307
            |||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1784 cttcgagtattactctcgtaagtgtcaagatgcatctccctatgtaatcctttccaaacg 1725

                                                                        
Query: 308  tatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaat 367
            ||||||| ||||||||||||||||| || |||||||||| ||||||||| || |||||||
Sbjct: 1724 tatcatgatcccatacttccaccatgagtaaatcatgcaaggcatcttcaacaacaaaat 1665

                                                                        
Query: 368  caaatgtctgattccatatcggattcaatgtctcagtcacaacccttgtnttctttttgg 427
            |||| |||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 1664 caaacgtctgattccatattggattcagtgtctcagttacaacccttgtcttctttttgg 1605

                
Query: 428  tttc 431
            ||||
Sbjct: 1604 tttc 1601
to top
>dbj|AK069706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028A22, full
            insert sequence
          Length = 2255

 Score =  311 bits (157), Expect = 1e-81
 Identities = 267/304 (87%)
 Strand = Plus / Minus

                                                                        
Query: 128  tacacaggtttcactgatccctgtcacgatcacggtaaattggctgtgccgtccatttga 187
            ||||||| |||||||| ||||  ||||||||||| ||||||||||| | |||||| ||||
Sbjct: 1905 tacacagatttcactggtcccgatcacgatcacgataaattggctgcggcgtccacttga 1846

                                                                        
Query: 188  agtgcaggttcagccttccagatttagcaccttgcagcgcatatgtatcttggaactcac 247
            |||||| ||||||| |||| ||||||||||||||||   || |   ||| || ||||| |
Sbjct: 1845 agtgcaagttcagctttccggatttagcaccttgcaaaacaaactcatcctgaaactcgc 1786

                                                                        
Query: 248  cttcaagtatcgctctggtaagtgtcaagatgcatctccctatgtaatcctttccaaatg 307
            |||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1785 cttcgagtattactctcgtaagtgtcaagatgcatctccctatgtaatcctttccaaacg 1726

                                                                        
Query: 308  tatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaat 367
            ||||||| ||||||||||||||||| || |||||||||| ||||||||| || |||||||
Sbjct: 1725 tatcatgatcccatacttccaccatgagtaaatcatgcaaggcatcttcaacaacaaaat 1666

                                                                        
Query: 368  caaatgtctgattccatatcggattcaatgtctcagtcacaacccttgtnttctttttgg 427
            |||| |||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 1665 caaacgtctgattccatattggattcagtgtctcagttacaacccttgtcttctttttgg 1606

                
Query: 428  tttc 431
            ||||
Sbjct: 1605 tttc 1602
to top
>ref|XM_481414.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1698

 Score =  299 bits (151), Expect = 4e-78
 Identities = 258/294 (87%)
 Strand = Plus / Minus

                                                                        
Query: 138  tcactgatccctgtcacgatcacggtaaattggctgtgccgtccatttgaagtgcaggtt 197
            |||||| ||||  ||||||||||| ||||||||||| | |||||| |||||||||| |||
Sbjct: 1698 tcactggtcccgatcacgatcacgataaattggctgcggcgtccacttgaagtgcaagtt 1639

                                                                        
Query: 198  cagccttccagatttagcaccttgcagcgcatatgtatcttggaactcaccttcaagtat 257
            |||| |||| ||||||||||||||||   || |   ||| || ||||| ||||| |||||
Sbjct: 1638 cagctttccggatttagcaccttgcaaaacaaactcatcctgaaactcgccttcgagtat 1579

                                                                        
Query: 258  cgctctggtaagtgtcaagatgcatctccctatgtaatcctttccaaatgtatcatggtc 317
              |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 1578 tactctcgtaagtgtcaagatgcatctccctatgtaatcctttccaaacgtatcatgatc 1519

                                                                        
Query: 318  ccatacttccaccataagcaaatcatgcagggcatcttctactacaaaatcaaatgtctg 377
            ||||||||||||||| || |||||||||| ||||||||| || ||||||||||| |||||
Sbjct: 1518 ccatacttccaccatgagtaaatcatgcaaggcatcttcaacaacaaaatcaaacgtctg 1459

                                                                  
Query: 378  attccatatcggattcaatgtctcagtcacaacccttgtnttctttttggtttc 431
            ||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct: 1458 attccatattggattcagtgtctcagttacaacccttgtcttctttttggtttc 1405
to top
>gb|AY108443.1| Zea mays PCO082434 mRNA sequence
          Length = 1548

 Score =  299 bits (151), Expect = 4e-78
 Identities = 258/294 (87%)
 Strand = Plus / Minus

                                                                        
Query: 138  tcactgatccctgtcacgatcacggtaaattggctgtgccgtccatttgaagtgcaggtt 197
            |||||||||||||||||||||||| || |||||||||| |||||| ||||| |||| |||
Sbjct: 1182 tcactgatccctgtcacgatcacgatagattggctgtggcgtccacttgaaatgcaagtt 1123

                                                                        
Query: 198  cagccttccagatttagcaccttgcagcgcatatgtatcttggaactcaccttcaagtat 257
             ||  |||| ||||| ||||||||||   || | ||||||||||| |||||||| |||||
Sbjct: 1122 tagttttcccgatttggcaccttgcaagacaaaggtatcttggaattcaccttcgagtat 1063

                                                                        
Query: 258  cgctctggtaagtgtcaagatgcatctccctatgtaatcctttccaaatgtatcatggtc 317
              |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1062 aactctcgtcagtgtcaagatgcacctccctatgtaatcctttccaaatgtatcatggtc 1003

                                                                        
Query: 318  ccatacttccaccataagcaaatcatgcagggcatcttctactacaaaatcaaatgtctg 377
            ||||||||||||||| |||||||||||||| ||||||||||| |  ||||||||||||||
Sbjct: 1002 ccatacttccaccatgagcaaatcatgcagtgcatcttctaccatgaaatcaaatgtctg 943

                                                                  
Query: 378  attccatatcggattcaatgtctcagtcacaacccttgtnttctttttggtttc 431
             |||||||| ||||| || || || ||||||||||| || ||||||||||||||
Sbjct: 942  gttccatattggatttaacgtgtctgtcacaaccctcgtcttctttttggtttc 889
to top
>gb|AY360394.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19,
             complete sequence
          Length = 158749

 Score =  143 bits (72), Expect = 5e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                         
Query: 296   cctttccaaatgtatcatggtcccatacttccaccataagcaaatcatgcagggcatctt 355
             |||||||||| |||||||| ||||||||||||||||| || |||||||||| ||||||||
Sbjct: 68402 cctttccaaacgtatcatgatcccatacttccaccatgagtaaatcatgcaaggcatctt 68343

                                                                     
Query: 356   ctactacaaaatcaaatgtctgattccatatcggattcaatgtctcagtcacaacc 411
             | || ||||||||||| |||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 68342 caacaacaaaatcaaacgtctgattccatattggattcagtgtctcagttacaacc 68287



 Score =  141 bits (71), Expect = 2e-30
 Identities = 146/171 (85%)
 Strand = Plus / Minus

                                                                         
Query: 128   tacacaggtttcactgatccctgtcacgatcacggtaaattggctgtgccgtccatttga 187
             ||||||| |||||||| ||||  ||||||||||| ||||||||||| | |||||| ||||
Sbjct: 69177 tacacagatttcactggtcccgatcacgatcacgataaattggctgcggcgtccacttga 69118

                                                                         
Query: 188   agtgcaggttcagccttccagatttagcaccttgcagcgcatatgtatcttggaactcac 247
             |||||| ||||||| |||| ||||||||||||||||   || |   ||| || ||||| |
Sbjct: 69117 agtgcaagttcagctttccggatttagcaccttgcaaaacaaactcatcctgaaactcgc 69058

                                                                
Query: 248   cttcaagtatcgctctggtaagtgtcaagatgcatctccctatgtaatcct 298
             |||| |||||  |||| ||||||||||||||||||||||||||||||||||
Sbjct: 69057 cttcgagtattactctcgtaagtgtcaagatgcatctccctatgtaatcct 69007



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 408   aacccttgtnttctttttggtttc 431
             ||||||||| ||||||||||||||
Sbjct: 68185 aacccttgtcttctttttggtttc 68162
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  143 bits (72), Expect = 5e-31
 Identities = 105/116 (90%)
 Strand = Plus / Plus

                                                                            
Query: 296      cctttccaaatgtatcatggtcccatacttccaccataagcaaatcatgcagggcatctt 355
                |||||||||| |||||||| ||||||||||||||||| || |||||||||| ||||||||
Sbjct: 12325429 cctttccaaacgtatcatgatcccatacttccaccatgagtaaatcatgcaaggcatctt 12325488

                                                                        
Query: 356      ctactacaaaatcaaatgtctgattccatatcggattcaatgtctcagtcacaacc 411
                | || ||||||||||| |||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 12325489 caacaacaaaatcaaacgtctgattccatattggattcagtgtctcagttacaacc 12325544



 Score =  141 bits (71), Expect = 2e-30
 Identities = 146/171 (85%)
 Strand = Plus / Plus

                                                                            
Query: 128      tacacaggtttcactgatccctgtcacgatcacggtaaattggctgtgccgtccatttga 187
                ||||||| |||||||| ||||  ||||||||||| ||||||||||| | |||||| ||||
Sbjct: 12324654 tacacagatttcactggtcccgatcacgatcacgataaattggctgcggcgtccacttga 12324713

                                                                            
Query: 188      agtgcaggttcagccttccagatttagcaccttgcagcgcatatgtatcttggaactcac 247
                |||||| ||||||| |||| ||||||||||||||||   || |   ||| || ||||| |
Sbjct: 12324714 agtgcaagttcagctttccggatttagcaccttgcaaaacaaactcatcctgaaactcgc 12324773

                                                                   
Query: 248      cttcaagtatcgctctggtaagtgtcaagatgcatctccctatgtaatcct 298
                |||| |||||  |||| ||||||||||||||||||||||||||||||||||
Sbjct: 12324774 cttcgagtattactctcgtaagtgtcaagatgcatctccctatgtaatcct 12324824



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 408      aacccttgtnttctttttggtttc 431
                ||||||||| ||||||||||||||
Sbjct: 12325646 aacccttgtcttctttttggtttc 12325669
to top
>dbj|AP004458.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0045D08
          Length = 160541

 Score =  143 bits (72), Expect = 5e-31
 Identities = 105/116 (90%)
 Strand = Plus / Plus

                                                                         
Query: 296   cctttccaaatgtatcatggtcccatacttccaccataagcaaatcatgcagggcatctt 355
             |||||||||| |||||||| ||||||||||||||||| || |||||||||| ||||||||
Sbjct: 84078 cctttccaaacgtatcatgatcccatacttccaccatgagtaaatcatgcaaggcatctt 84137

                                                                     
Query: 356   ctactacaaaatcaaatgtctgattccatatcggattcaatgtctcagtcacaacc 411
             | || ||||||||||| |||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 84138 caacaacaaaatcaaacgtctgattccatattggattcagtgtctcagttacaacc 84193



 Score =  141 bits (71), Expect = 2e-30
 Identities = 146/171 (85%)
 Strand = Plus / Plus

                                                                         
Query: 128   tacacaggtttcactgatccctgtcacgatcacggtaaattggctgtgccgtccatttga 187
             ||||||| |||||||| ||||  ||||||||||| ||||||||||| | |||||| ||||
Sbjct: 83303 tacacagatttcactggtcccgatcacgatcacgataaattggctgcggcgtccacttga 83362

                                                                         
Query: 188   agtgcaggttcagccttccagatttagcaccttgcagcgcatatgtatcttggaactcac 247
             |||||| ||||||| |||| ||||||||||||||||   || |   ||| || ||||| |
Sbjct: 83363 agtgcaagttcagctttccggatttagcaccttgcaaaacaaactcatcctgaaactcgc 83422

                                                                
Query: 248   cttcaagtatcgctctggtaagtgtcaagatgcatctccctatgtaatcct 298
             |||| |||||  |||| ||||||||||||||||||||||||||||||||||
Sbjct: 83423 cttcgagtattactctcgtaagtgtcaagatgcatctccctatgtaatcct 83473



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 408   aacccttgtnttctttttggtttc 431
             ||||||||| ||||||||||||||
Sbjct: 84295 aacccttgtcttctttttggtttc 84318
to top
>ref|NM_121148.1| Arabidopsis thaliana unknown protein AT5G11100 mRNA, complete cds
          Length = 1725

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 94/114 (82%)
 Strand = Plus / Minus

                                                                        
Query: 282  tctccctatgtaatcctttccaaatgtatcatggtcccatacttccaccataagcaaatc 341
            ||||||||| |  ||||| |||||| | ||||||||||||||||| | | | |  | |||
Sbjct: 1590 tctccctatcttgtccttgccaaatttgtcatggtcccatacttcaagcgtcaatagatc 1531

                                                                  
Query: 342  atgcagggcatcttctactacaaaatcaaatgtctgattccatatcggattcaa 395
            |||||  |||||||| |||||||||||||| ||||| ||||| | |||||||||
Sbjct: 1530 atgcaaagcatcttccactacaaaatcaaacgtctggttccaaaccggattcaa 1477
to top
>emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project)
          Length = 96379

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 94/114 (82%)
 Strand = Plus / Minus

                                                                         
Query: 282   tctccctatgtaatcctttccaaatgtatcatggtcccatacttccaccataagcaaatc 341
             ||||||||| |  ||||| |||||| | ||||||||||||||||| | | | |  | |||
Sbjct: 86226 tctccctatcttgtccttgccaaatttgtcatggtcccatacttcaagcgtcaatagatc 86167

                                                                   
Query: 342   atgcagggcatcttctactacaaaatcaaatgtctgattccatatcggattcaa 395
             |||||  |||||||| |||||||||||||| ||||| ||||| | |||||||||
Sbjct: 86166 atgcaaagcatcttccactacaaaatcaaacgtctggttccaaaccggattcaa 86113
to top
>ref|NM_100429.1| Arabidopsis thaliana unknown protein AT1G05500 mRNA, complete cds
          Length = 1587

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 280  catctccctatgtaatcctttccaaatgtatcatggtcccatacttccaccataagcaaa 339
            |||||||| ||||| ||||||||||| || || |||||||| ||||| |  |  |||| |
Sbjct: 1457 catctcccaatgtagtcctttccaaaggtgtcgtggtcccagacttcaaggactagcata 1398

                                                                    
Query: 340  tcatgcagggcatcttctactacaaaatcaaatgtctgattccatatcggattcaa 395
            ||||| |   | ||||| |||||||||||||| ||||| ||||||| ||| |||||
Sbjct: 1397 tcatgtaacccgtcttcaactacaaaatcaaaagtctggttccataccgggttcaa 1342
to top
>gb|BT008907.1| Arabidopsis thaliana At1g05500 mRNA, complete cds
          Length = 1683

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 280  catctccctatgtaatcctttccaaatgtatcatggtcccatacttccaccataagcaaa 339
            |||||||| ||||| ||||||||||| || || |||||||| ||||| |  |  |||| |
Sbjct: 1553 catctcccaatgtagtcctttccaaaggtgtcgtggtcccagacttcaaggactagcata 1494

                                                                    
Query: 340  tcatgcagggcatcttctactacaaaatcaaatgtctgattccatatcggattcaa 395
            ||||| |   | ||||| |||||||||||||| ||||| ||||||| ||| |||||
Sbjct: 1493 tcatgtaacccgtcttcaactacaaaatcaaaagtctggttccataccgggttcaa 1438
to top
>gb|AY140038.1| Arabidopsis thaliana Ca2+-dependent lipid-binding protein, putative
            (At1g05500) mRNA, complete cds
          Length = 2052

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 280  catctccctatgtaatcctttccaaatgtatcatggtcccatacttccaccataagcaaa 339
            |||||||| ||||| ||||||||||| || || |||||||| ||||| |  |  |||| |
Sbjct: 1676 catctcccaatgtagtcctttccaaaggtgtcgtggtcccagacttcaaggactagcata 1617

                                                                    
Query: 340  tcatgcagggcatcttctactacaaaatcaaatgtctgattccatatcggattcaa 395
            ||||| |   | ||||| |||||||||||||| ||||| ||||||| ||| |||||
Sbjct: 1616 tcatgtaacccgtcttcaactacaaaatcaaaagtctggttccataccgggttcaa 1561
to top
>gb|BT013623.1| Lycopersicon esculentum clone 132425F, mRNA sequence
          Length = 2230

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 270  tgtcaagatgcatctccctatgtaatcctttccaaatgtatcatggtcccatacttc 326
            |||||| ||||| || || |||||||||||||| || || ||||||||||| |||||
Sbjct: 1738 tgtcaatatgcaccttcccatgtaatcctttccgaaggtgtcatggtcccaaacttc 1682
to top
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
             complete sequence
          Length = 84203

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 352   tcttctactacaaaatcaaatgtctgattccatatcggattcaa 395
             ||||| |||||||||||||| ||||| ||||||| ||| |||||
Sbjct: 60660 tcttcaactacaaaatcaaaagtctggttccataccgggttcaa 60617
to top
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
             sequence
          Length = 103223

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 352   tcttctactacaaaatcaaatgtctgattccatatcggattcaa 395
             ||||| |||||||||||||| ||||| ||||||| ||| |||||
Sbjct: 10111 tcttcaactacaaaatcaaaagtctggttccataccgggttcaa 10068
to top
>ref|XM_474098.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1728

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 88/110 (80%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaa 366
            |||||||| ||  ||||||||| |||||||| |||||| |   ||||||| || ||||||
Sbjct: 1544 gtatcatgatcatatacttccaacataagcatatcatgtaaaccatcttcgacaacaaaa 1485

                                                              
Query: 367  tcaaatgtctgattccatatcggattcaatgtctcagtcacaacccttgt 416
            ||||| || || ||||| |  ||||||||  | ||  |||||||||||||
Sbjct: 1484 tcaaaagtttggttccaaactggattcaagctttcgctcacaacccttgt 1435
to top
>gb|AC069435.19| Homo sapiens 3 BAC RP11-384L1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 111861

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 357   tactacaaaatcaaatgtctga 378
             ||||||||||||||||||||||
Sbjct: 68900 tactacaaaatcaaatgtctga 68921
to top
>gb|AC135230.8| Medicago truncatula clone mth2-23e14, complete sequence
          Length = 124972

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 391   ttcaatgtctcagtcacaacccttg 415
             ||||||||||| |||||||||||||
Sbjct: 92895 ttcaatgtctctgtcacaacccttg 92919
to top
>gb|AC137829.23| Medicago truncatula clone mth2-34j5, complete sequence
          Length = 127295

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 391   ttcaatgtctcagtcacaacccttg 415
             ||||||||||| |||||||||||||
Sbjct: 33586 ttcaatgtctctgtcacaacccttg 33562
to top
>emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070O11,
            complete sequence
          Length = 134231

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 307  gtatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaa 366
            |||||||| ||  ||||||||| |||||||| |||||| |   ||||||| || ||||||
Sbjct: 7590 gtatcatgatcatatacttccaacataagcatatcatgtaaaccatcttcgacaacaaaa 7531

                 
Query: 367  tcaaa 371
            |||||
Sbjct: 7530 tcaaa 7526
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                            
Query: 307      gtatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaa 366
                |||||||| ||  ||||||||| |||||||| |||||| |   ||||||| || ||||||
Sbjct: 32864741 gtatcatgatcatatacttccaacataagcatatcatgtaaaccatcttcgacaacaaaa 32864682

                     
Query: 367      tcaaa 371
                |||||
Sbjct: 32864681 tcaaa 32864677
to top
>dbj|AK062763.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-H03, full
           insert sequence
          Length = 541

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 307 gtatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaa 366
           |||||||| ||  ||||||||| |||||||| |||||| |   ||||||| || ||||||
Sbjct: 78  gtatcatgatcatatacttccaacataagcatatcatgtaaaccatcttcgacaacaaaa 19

                
Query: 367 tcaaa 371
           |||||
Sbjct: 18  tcaaa 14
to top
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                         
Query: 307   gtatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaa 366
             |||||||| ||  ||||||||| |||||||| |||||| |   ||||||| || ||||||
Sbjct: 60034 gtatcatgatcatatacttccaacataagcatatcatgtaaaccatcttcgacaacaaaa 59975

                  
Query: 367   tcaaa 371
             |||||
Sbjct: 59974 tcaaa 59970
to top
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
              complete sequence
          Length = 142556

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                          
Query: 307    gtatcatggtcccatacttccaccataagcaaatcatgcagggcatcttctactacaaaa 366
              |||||||| ||  ||||||||| |||||||| |||||| |   ||||||| || ||||||
Sbjct: 127028 gtatcatgatcatatacttccaacataagcatatcatgtaaaccatcttcgacaacaaaa 126969

                   
Query: 367    tcaaa 371
              |||||
Sbjct: 126968 tcaaa 126964
to top
>gb|AC169511.1| Mus musculus BAC clone RP23-81P24 from chromosome 14, complete sequence
          Length = 252587

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 355   tctactacaaaatcaaatgtctgattcc 382
             |||||||||||||||| |||||| ||||
Sbjct: 99153 tctactacaaaatcaagtgtctgtttcc 99126
to top
>gb|AF509496.1| Chlamydomonas reinhardtii strain CC-125 putative amt protein gene,
           complete cds
          Length = 7383

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 ttggctgtgccgtccatttg 186
           ||||||||||||||||||||
Sbjct: 320 ttggctgtgccgtccatttg 301
to top
>emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 on chromosome 3,
             complete sequence
          Length = 145085

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   acaaaatcaaatgtctgatt 380
             ||||||||||||||||||||
Sbjct: 16435 acaaaatcaaatgtctgatt 16454
to top
>gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-926E7, complete
             sequence
          Length = 101311

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   atcggattcaatgtctcagt 404
             ||||||||||||||||||||
Sbjct: 43490 atcggattcaatgtctcagt 43509
to top
>gb|AC159647.2| Mus musculus BAC clone RP23-66A14 from chromosome 12, complete sequence
          Length = 213946

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    ttgaagtgcaggttcagcct 203
              ||||||||||||||||||||
Sbjct: 197230 ttgaagtgcaggttcagcct 197211
to top
>gb|AF509497.1| Chlamydomonas reinhardtii strain C-9 putative amt protein mRNA,
           complete cds
          Length = 2568

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 ttggctgtgccgtccatttg 186
           ||||||||||||||||||||
Sbjct: 320 ttggctgtgccgtccatttg 301
to top
>gb|AC156568.3| Mus musculus BAC clone RP23-291D3 from chromosome 12, complete sequence
          Length = 224350

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   ttgaagtgcaggttcagcct 203
             ||||||||||||||||||||
Sbjct: 14548 ttgaagtgcaggttcagcct 14529
to top
>gb|AC090497.2|AC090497 Homo sapiens chromosome 7 clone RP11-643E1, complete sequence
          Length = 169199

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     gtagaggaagaggcagtctt 115
              ||||||||||||||||||||
Sbjct: 113781 gtagaggaagaggcagtctt 113762
to top
>gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, complete sequence
          Length = 175802

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 385   atcggattcaatgtctcagt 404
             ||||||||||||||||||||
Sbjct: 53922 atcggattcaatgtctcagt 53903
to top
>gb|AC083862.2|AC083862 Homo sapiens chromosome 7 clone RP11-134L10, complete sequence
          Length = 162931

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gtagaggaagaggcagtctt 115
             ||||||||||||||||||||
Sbjct: 51716 gtagaggaagaggcagtctt 51697
to top
>emb|AJ000238.1|HVJ000238 Hordeum vulgare mRNA for expressed sequence tag
          Length = 300

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 62/76 (81%)
 Strand = Plus / Minus

                                                                       
Query: 340 tcatgcagggcatcttctactacaaaatcaaatgtctgattccatatcggattcaatgtc 399
           ||||||| | ||||||| || ||||| ||||| || |||||||| | ||| |||||  | 
Sbjct: 76  tcatgcaagccatcttcgacaacaaagtcaaaagtttgattccaaaccgggttcaagctt 17

                           
Query: 400 tcagtcacaacccttg 415
           ||| ||||||||||||
Sbjct: 16  tcattcacaacccttg 1
to top
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    tacacggttacaacttacaa 55
             ||||||||||||||||||||
Sbjct: 33617 tacacggttacaacttacaa 33598
to top
>gb|AF148956.1|AF148956 Oryctolagus cuniculus lens-specific calpain Lp82 mRNA, complete cds
          Length = 2196

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 190  tgcaggttcagccttccaga 209
            ||||||||||||||||||||
Sbjct: 1813 tgcaggttcagccttccaga 1794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,586,179
Number of Sequences: 3902068
Number of extensions: 3586179
Number of successful extensions: 63929
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63841
Number of HSP's gapped (non-prelim): 87
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top