ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30n02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1006 Score = 392 bits (198), Expect = e-106 Identities = 407/474 (85%), Gaps = 2/474 (0%) Strand = Plus / Minus Query: 252 gttcatgcttggtcatatcttcactcaatcccaagccgcttctttgtgtgttgaagcaga 311 |||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||| | Sbjct: 755 gttcatccttggtcacatcttcaggcaatcccaagacgcttctttgtgtgttcaagcaaa 696 Query: 312 aattgtgggtccagcttcgtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 371 || ||||||||| | || |||| ||| || |||| |||||||||||||||||||||||| Sbjct: 695 aactgtgggtcctgtttggtttctgtataggcatgaatcttgttcacttcctcgatgaat 636 Query: 372 ttctgaatgttaggtctgtccttggtgatatcatagttttttataccagaaaagaatatc 431 ||||||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 635 ttctgaaggttgggtcggcccttggtgatatcgtagttctttataccagaaaagaatatc 576 Query: 432 tgaaacctttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaag 491 ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct: 575 tgaaacctttcaataaatggaacatacgcaatgtccaccaagctgaactggccaaggaag 516 Query: 492 aaagggccatcactaaactttcccagggcggcttctattttatccagcgcagcaacagtt 551 || |||||||| | |||||| ||| || ||||||||||| || || |||||||||| Sbjct: 515 aatgggccatcgttgaactttgacagagcagcttctattttgtcaagagcagcaacagcc 456 Query: 552 tcctctgca-acatctcccttggaggttatggatgagtatagtgctttattgaactcatc 610 || || ||| ||||||||||||| | |||||||||||| |||||| |||||| |||| Sbjct: 455 tcatc-gcacacatctcccttggcgactatggatgagtacgatgctttgttgaacgcatc 397 Query: 611 ggtatacacaagcagctcctcggaaaactgcttctttgcagaatcatcaggaagcaatgc 670 || ||| |||| |||||||| | ||||||| ||| ||||||||||||| || ||||| Sbjct: 396 agtgtacgcaagaagctcctcagcgaactgctgcttctcagaatcatcagggagtaatgc 337 Query: 671 agggccatcgaaattgctgtcaatgtacttgaccaaatccaagctctctccttt 724 || || ||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 336 tggcccttcgaaattggtgtcaatgtacttgaccaaatccaagctttctccttt 283
>dbj|AK065887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J05, full insert sequence Length = 1252 Score = 392 bits (198), Expect = e-106 Identities = 407/474 (85%), Gaps = 2/474 (0%) Strand = Plus / Minus Query: 252 gttcatgcttggtcatatcttcactcaatcccaagccgcttctttgtgtgttgaagcaga 311 |||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||| | Sbjct: 928 gttcatccttggtcacatcttcaggcaatcccaagacgcttctttgtgtgttcaagcaaa 869 Query: 312 aattgtgggtccagcttcgtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 371 || ||||||||| | || |||| ||| || |||| |||||||||||||||||||||||| Sbjct: 868 aactgtgggtcctgtttggtttctgtataggcatgaatcttgttcacttcctcgatgaat 809 Query: 372 ttctgaatgttaggtctgtccttggtgatatcatagttttttataccagaaaagaatatc 431 ||||||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 808 ttctgaaggttgggtcggcccttggtgatatcgtagttctttataccagaaaagaatatc 749 Query: 432 tgaaacctttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaag 491 ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct: 748 tgaaacctttcaataaatggaacatacgcaatgtccaccaagctgaactggccaaggaag 689 Query: 492 aaagggccatcactaaactttcccagggcggcttctattttatccagcgcagcaacagtt 551 || |||||||| | |||||| ||| || ||||||||||| || || |||||||||| Sbjct: 688 aatgggccatcgttgaactttgacagagcagcttctattttgtcaagagcagcaacagcc 629 Query: 552 tcctctgca-acatctcccttggaggttatggatgagtatagtgctttattgaactcatc 610 || || ||| ||||||||||||| | |||||||||||| |||||| |||||| |||| Sbjct: 628 tcatc-gcacacatctcccttggcgactatggatgagtacgatgctttgttgaacgcatc 570 Query: 611 ggtatacacaagcagctcctcggaaaactgcttctttgcagaatcatcaggaagcaatgc 670 || ||| |||| |||||||| | ||||||| ||| ||||||||||||| || ||||| Sbjct: 569 agtgtacgcaagaagctcctcagcgaactgctgcttctcagaatcatcagggagtaatgc 510 Query: 671 agggccatcgaaattgctgtcaatgtacttgaccaaatccaagctctctccttt 724 || || ||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 509 tggcccttcgaaattggtgtcaatgtacttgaccaaatccaagctttctccttt 456
>dbj|AK061849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F06, full insert sequence Length = 1029 Score = 392 bits (198), Expect = e-106 Identities = 407/474 (85%), Gaps = 2/474 (0%) Strand = Plus / Minus Query: 252 gttcatgcttggtcatatcttcactcaatcccaagccgcttctttgtgtgttgaagcaga 311 |||||| |||||||| ||||||| |||||||||| |||||||||||||||| ||||| | Sbjct: 804 gttcatccttggtcacatcttcaggcaatcccaagacgcttctttgtgtgttcaagcaaa 745 Query: 312 aattgtgggtccagcttcgtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 371 || ||||||||| | || |||| ||| || |||| |||||||||||||||||||||||| Sbjct: 744 aactgtgggtcctgtttggtttctgtataggcatgaatcttgttcacttcctcgatgaat 685 Query: 372 ttctgaatgttaggtctgtccttggtgatatcatagttttttataccagaaaagaatatc 431 ||||||| ||| |||| | ||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 684 ttctgaaggttgggtcggcccttggtgatatcgtagttctttataccagaaaagaatatc 625 Query: 432 tgaaacctttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaag 491 ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||| Sbjct: 624 tgaaacctttcaataaatggaacatacgcaatgtccaccaagctgaactggccaaggaag 565 Query: 492 aaagggccatcactaaactttcccagggcggcttctattttatccagcgcagcaacagtt 551 || |||||||| | |||||| ||| || ||||||||||| || || |||||||||| Sbjct: 564 aatgggccatcgttgaactttgacagagcagcttctattttgtcaagagcagcaacagcc 505 Query: 552 tcctctgca-acatctcccttggaggttatggatgagtatagtgctttattgaactcatc 610 || || ||| ||||||||||||| | |||||||||||| |||||| |||||| |||| Sbjct: 504 tcatc-gcacacatctcccttggcgactatggatgagtacgatgctttgttgaacgcatc 446 Query: 611 ggtatacacaagcagctcctcggaaaactgcttctttgcagaatcatcaggaagcaatgc 670 || ||| |||| |||||||| | ||||||| ||| ||||||||||||| || ||||| Sbjct: 445 agtgtacgcaagaagctcctcagcgaactgctgcttctcagaatcatcagggagtaatgc 386 Query: 671 agggccatcgaaattgctgtcaatgtacttgaccaaatccaagctctctccttt 724 || || ||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 385 tggcccttcgaaattggtgtcaatgtacttgaccaaatccaagctttctccttt 332
>gb|AY111952.1| Zea mays CL5438_1 mRNA sequence Length = 1008 Score = 184 bits (93), Expect = 3e-43 Identities = 232/280 (82%) Strand = Plus / Minus Query: 277 caatcccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtg 336 |||||||||||||||||||||| || | |||| || |||||||| || || |||| Sbjct: 744 caatcccaagccgcttctttgtttgctcaagcnnnnnctgcgggtccagtttagtctgtg 685 Query: 337 tgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttgg 396 |||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||| | Sbjct: 684 tgtacgcatcgatcttgttcacttcctcgatgaatttctgaaggttgggtctgccctttg 625 Query: 397 tgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacat 456 |||| |||||||| ||||| ||| ||| |||||||| ||| ||||| || || |||| Sbjct: 624 tgatgtcatagttctttatggtggaatagagtatctgaagcctctcgatgaacggtacat 565 Query: 457 atgcaatgtccaccaaactgaactggccaaggaagaaagggccatcactaaactttccca 516 | |||| |||||||| ||||||||| ||||||||||| ||||| || | || || |||| Sbjct: 564 acgcaacgtccaccagactgaactgaccaaggaagaacgggccgtcgttgaatttcccca 505 Query: 517 gggcggcttctattttatccagcgcagcaacagtttcctc 556 ||||| |||||||||| |||| |||||||| | |||||| Sbjct: 504 gggcgtcttctattttgtccaaggcagcaacggcttcctc 465 Score = 73.8 bits (37), Expect = 7e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 684 ttgctgtcaatgtacttgaccaaatccaagctctctccttt 724 ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 337 ttgctgtcaatgtacttaaccaaatccaagctctctccttt 297
>gb|AY108092.1| Zea mays PCO124824 mRNA sequence Length = 658 Score = 180 bits (91), Expect = 4e-42 Identities = 247/299 (82%) Strand = Plus / Minus Query: 277 caatcccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtg 336 |||||||||||||||||||||| || | ||| | ||| ||||||||| | || || |||| Sbjct: 353 caatcccaagccgcttctttgtctgctcaagtaaaaactgtgggtcctgtttagtctgtg 294 Query: 337 tgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttgg 396 |||||||||| ||||||| ||||||||| ||||| ||||||| ||| |||||| |||| | Sbjct: 293 tgtatgcatcaatcttgtccacttcctcaatgaacttctgaaggttgggtctgccctttg 234 Query: 397 tgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacat 456 | ||||||||||| ||||| ||| |||||||||||||||| ||||| ||||| |||| Sbjct: 233 taatatcatagttctttatgttggaatagaatatctgaaacctctcgatgaatggtacat 174 Query: 457 atgcaatgtccaccaaactgaactggccaaggaagaaagggccatcactaaactttccca 516 | ||||||||||||| ||||||||| |||||| |||| || || || | || || || | Sbjct: 173 acgcaatgtccaccagactgaactgaccaagggagaatggaccctcgttgaatttcccga 114 Query: 517 gggcggcttctattttatccagcgcagcaacagtttcctctgcaacatctcccttggag 575 ||||| || ||||||||||| ||||| |||| |||||| | |||||| |||||||| Sbjct: 113 gggcgttttttattttatccaaagcagcgacagcttcctcagacacatcttccttggag 55
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 147 bits (74), Expect = 6e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 361 cctcgatgaatttctgaatgttaggtctgtccttggtgatatcatagttttttataccag 420 |||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||||||||| Sbjct: 9684963 cctcgatgaatttctgaaggttgggtcggcccttggtgatatcgtagttctttataccag 9685022 Query: 421 aaaagaatatctgaaacctttcgataaatggcacatatgcaatgtccacc 470 |||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct: 9685023 aaaagaatatctgaaacctttcaataaatggaacatacgcaatgtccacc 9685072 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 655 catcaggaagcaatgcagggccatcgaaattgctgtcaatgtacttgaccaaatccaagc 714 ||||||| || ||||| || || ||||||||| ||||||||||||||||||||||||||| Sbjct: 9685574 catcagggagtaatgctggcccttcgaaattggtgtcaatgtacttgaccaaatccaagc 9685633 Query: 715 tctctccttt 724 | |||||||| Sbjct: 9685634 tttctccttt 9685643 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 281 cccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtgtgta 340 |||||| |||||||||||||||| ||||| ||| ||||||||| | || |||| ||| || Sbjct: 9684684 cccaagacgcttctttgtgtgttcaagcaaaaactgtgggtcctgtttggtttctgtata 9684743 Query: 341 tgcatcgatcttgttcacttcct 363 |||| |||||||||||||||| Sbjct: 9684744 ggcatgaatcttgttcacttcct 9684766 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 468 accaaactgaactggccaaggaagaaagggccatcactaaactttcccagggcggcttct 527 ||||| |||||||||||||||||||| |||||||| | |||||| ||| || |||||| Sbjct: 9685184 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacagagcagcttct 9685243 Query: 528 attttatccagcgcagcaac 547 ||||| || || |||||||| Sbjct: 9685244 attttgtcaagagcagcaac 9685263 Score = 50.1 bits (25), Expect = 0.010 Identities = 112/141 (79%) Strand = Plus / Plus Query: 330 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 389 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 9689673 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 9689732 Query: 390 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 449 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 9689733 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 9689792 Query: 450 ggcacatatgcaatgtccacc 470 | |||||| |||||||||||| Sbjct: 9689793 gtcacatacgcaatgtccacc 9689813 Score = 46.1 bits (23), Expect = 0.16 Identities = 59/71 (83%) Strand = Plus / Plus Query: 561 acatctcccttggaggttatggatgagtatagtgctttattgaactcatcggtatacaca 620 ||||||||||||| | |||||||||||| |||||| |||||| |||| || ||| || Sbjct: 9685388 acatctcccttggcgactatggatgagtacgatgctttgttgaacgcatcagtgtacgca 9685447 Query: 621 agcagctcctc 631 || |||||||| Sbjct: 9685448 agaagctcctc 9685458 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 483 ccaaggaagaaagggccatcactaaactttcccagggcggcttctattttatccagcgca 542 ||||||||||| || ||||||| ||||| |||||| |||||||| || ||||| ||| Sbjct: 9690407 ccaaggaagaatggaccatcaccgaacttcgacagggcagcttctatcttgtccagagca 9690466 Query: 543 gcaac 547 ||||| Sbjct: 9690467 gcaac 9690471 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 tggccaaggaagaaagggccatca 503 |||||||||||||| ||||||||| Sbjct: 9681178 tggccaaggaagaatgggccatca 9681201
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 147 bits (74), Expect = 6e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 361 cctcgatgaatttctgaatgttaggtctgtccttggtgatatcatagttttttataccag 420 |||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||||||||| Sbjct: 105862 cctcgatgaatttctgaaggttgggtcggcccttggtgatatcgtagttctttataccag 105921 Query: 421 aaaagaatatctgaaacctttcgataaatggcacatatgcaatgtccacc 470 |||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct: 105922 aaaagaatatctgaaacctttcaataaatggaacatacgcaatgtccacc 105971 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 655 catcaggaagcaatgcagggccatcgaaattgctgtcaatgtacttgaccaaatccaagc 714 ||||||| || ||||| || || ||||||||| ||||||||||||||||||||||||||| Sbjct: 106473 catcagggagtaatgctggcccttcgaaattggtgtcaatgtacttgaccaaatccaagc 106532 Query: 715 tctctccttt 724 | |||||||| Sbjct: 106533 tttctccttt 106542 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 281 cccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtgtgta 340 |||||| |||||||||||||||| ||||| ||| ||||||||| | || |||| ||| || Sbjct: 105583 cccaagacgcttctttgtgtgttcaagcaaaaactgtgggtcctgtttggtttctgtata 105642 Query: 341 tgcatcgatcttgttcacttcct 363 |||| |||||||||||||||| Sbjct: 105643 ggcatgaatcttgttcacttcct 105665 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 468 accaaactgaactggccaaggaagaaagggccatcactaaactttcccagggcggcttct 527 ||||| |||||||||||||||||||| |||||||| | |||||| ||| || |||||| Sbjct: 106083 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacagagcagcttct 106142 Query: 528 attttatccagcgcagcaac 547 ||||| || || |||||||| Sbjct: 106143 attttgtcaagagcagcaac 106162 Score = 50.1 bits (25), Expect = 0.010 Identities = 112/141 (79%) Strand = Plus / Plus Query: 330 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 389 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 110572 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 110631 Query: 390 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 449 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 110632 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 110691 Query: 450 ggcacatatgcaatgtccacc 470 | |||||| |||||||||||| Sbjct: 110692 gtcacatacgcaatgtccacc 110712 Score = 46.1 bits (23), Expect = 0.16 Identities = 59/71 (83%) Strand = Plus / Plus Query: 561 acatctcccttggaggttatggatgagtatagtgctttattgaactcatcggtatacaca 620 ||||||||||||| | |||||||||||| |||||| |||||| |||| || ||| || Sbjct: 106287 acatctcccttggcgactatggatgagtacgatgctttgttgaacgcatcagtgtacgca 106346 Query: 621 agcagctcctc 631 || |||||||| Sbjct: 106347 agaagctcctc 106357 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 483 ccaaggaagaaagggccatcactaaactttcccagggcggcttctattttatccagcgca 542 ||||||||||| || ||||||| ||||| |||||| |||||||| || ||||| ||| Sbjct: 111306 ccaaggaagaatggaccatcaccgaacttcgacagggcagcttctatcttgtccagagca 111365 Query: 543 gcaac 547 ||||| Sbjct: 111366 gcaac 111370 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 tggccaaggaagaaagggccatca 503 |||||||||||||| ||||||||| Sbjct: 102077 tggccaaggaagaatgggccatca 102100
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 147 bits (74), Expect = 6e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 361 cctcgatgaatttctgaatgttaggtctgtccttggtgatatcatagttttttataccag 420 |||||||||||||||||| ||| |||| | ||||||||||||| ||||| |||||||||| Sbjct: 9683084 cctcgatgaatttctgaaggttgggtcggcccttggtgatatcgtagttctttataccag 9683143 Query: 421 aaaagaatatctgaaacctttcgataaatggcacatatgcaatgtccacc 470 |||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct: 9683144 aaaagaatatctgaaacctttcaataaatggaacatacgcaatgtccacc 9683193 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 655 catcaggaagcaatgcagggccatcgaaattgctgtcaatgtacttgaccaaatccaagc 714 ||||||| || ||||| || || ||||||||| ||||||||||||||||||||||||||| Sbjct: 9683695 catcagggagtaatgctggcccttcgaaattggtgtcaatgtacttgaccaaatccaagc 9683754 Query: 715 tctctccttt 724 | |||||||| Sbjct: 9683755 tttctccttt 9683764 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 281 cccaagccgcttctttgtgtgttgaagcagaaattgtgggtccagcttcgtttgtgtgta 340 |||||| |||||||||||||||| ||||| ||| ||||||||| | || |||| ||| || Sbjct: 9682805 cccaagacgcttctttgtgtgttcaagcaaaaactgtgggtcctgtttggtttctgtata 9682864 Query: 341 tgcatcgatcttgttcacttcct 363 |||| |||||||||||||||| Sbjct: 9682865 ggcatgaatcttgttcacttcct 9682887 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 468 accaaactgaactggccaaggaagaaagggccatcactaaactttcccagggcggcttct 527 ||||| |||||||||||||||||||| |||||||| | |||||| ||| || |||||| Sbjct: 9683305 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacagagcagcttct 9683364 Query: 528 attttatccagcgcagcaac 547 ||||| || || |||||||| Sbjct: 9683365 attttgtcaagagcagcaac 9683384 Score = 50.1 bits (25), Expect = 0.010 Identities = 112/141 (79%) Strand = Plus / Plus Query: 330 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 389 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 9687794 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 9687853 Query: 390 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 449 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 9687854 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 9687913 Query: 450 ggcacatatgcaatgtccacc 470 | |||||| |||||||||||| Sbjct: 9687914 gtcacatacgcaatgtccacc 9687934 Score = 46.1 bits (23), Expect = 0.16 Identities = 59/71 (83%) Strand = Plus / Plus Query: 561 acatctcccttggaggttatggatgagtatagtgctttattgaactcatcggtatacaca 620 ||||||||||||| | |||||||||||| |||||| |||||| |||| || ||| || Sbjct: 9683509 acatctcccttggcgactatggatgagtacgatgctttgttgaacgcatcagtgtacgca 9683568 Query: 621 agcagctcctc 631 || |||||||| Sbjct: 9683569 agaagctcctc 9683579 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 483 ccaaggaagaaagggccatcactaaactttcccagggcggcttctattttatccagcgca 542 ||||||||||| || ||||||| ||||| |||||| |||||||| || ||||| ||| Sbjct: 9688528 ccaaggaagaatggaccatcaccgaacttcgacagggcagcttctatcttgtccagagca 9688587 Query: 543 gcaac 547 ||||| Sbjct: 9688588 gcaac 9688592 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 480 tggccaaggaagaaagggccatca 503 |||||||||||||| ||||||||| Sbjct: 9679299 tggccaaggaagaatgggccatca 9679322
>ref|XM_493845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 796 Score = 113 bits (57), Expect = 8e-22 Identities = 306/389 (78%) Strand = Plus / Minus Query: 330 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 389 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 702 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 643 Query: 390 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 449 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 642 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 583 Query: 450 ggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggccatcactaaac 509 | |||||| |||||||||||||| || || || ||||||||||| || ||||||| ||| Sbjct: 582 gtcacatacgcaatgtccaccaagctaaattgtccaaggaagaatggaccatcaccgaac 523 Query: 510 tttcccagggcggcttctattttatccagcgcagcaacagtttcctctgcaacatctccc 569 || |||||| |||||||| || ||||| |||||||| || || ||| | |||| | Sbjct: 522 ttcgacagggcagcttctatcttgtccagagcagcaaccgtctcagctgacaaatctgct 463 Query: 570 ttggaggttatggatgagtatagtgctttattgaactcatcggtatacacaagcagctcc 629 |||||| ||| || |||||| |||||||| | ||| ||| || |||| ||| ||||| Sbjct: 462 ttggagattaagggtgagtagagtgctttggtaaacgcattggcatacgcaataagctca 403 Query: 630 tcggaaaactgcttctttgcagaatcatcaggaagcaatgcagggccatcgaaattgctg 689 || | |||||| |||| ||| ||| ||||| |||| ||||||||| ||||||| |||| Sbjct: 402 tcagcaaactgtctcttctcaggatcttcagggagcagtgcagggccttcgaaatggctg 343 Query: 690 tcaatgtacttgaccaaatccaagctctc 718 || |||||||||| |||||| || ||||| Sbjct: 342 tcgatgtacttgatcaaatctaaactctc 314
>gb|AF237487.2|AF237487 Oryza sativa XIG mRNA, complete cds Length = 1058 Score = 113 bits (57), Expect = 8e-22 Identities = 306/389 (78%) Strand = Plus / Minus Query: 330 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctg 389 |||||||| ||||| ||||| |||| | ||||||||||||||||| | ||| || | | Sbjct: 703 gtttgtgtatatgcttcgattctgttgatttcctcgatgaatttctcgaggttgggccgg 644 Query: 390 tccttggtgatatcatagttttttataccagaaaagaatatctgaaacctttcgataaat 449 | |||||||| || || || ||||| ||| || ||||||||| |||||| |||| | Sbjct: 643 ccattggtgatctcgtatttccttatatgagagtagtatatctgaatcctttcaataatt 584 Query: 450 ggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggccatcactaaac 509 | |||||| |||||||||||||| || || || ||||||||||| || ||||||| ||| Sbjct: 583 gtcacatacgcaatgtccaccaagctaaattgtccaaggaagaatggaccatcaccgaac 524 Query: 510 tttcccagggcggcttctattttatccagcgcagcaacagtttcctctgcaacatctccc 569 || |||||| |||||||| || ||||| |||||||| || || ||| | |||| | Sbjct: 523 ttcgacagggcagcttctatcttgtccagagcagcaaccgtctcagctgacaaatctgct 464 Query: 570 ttggaggttatggatgagtatagtgctttattgaactcatcggtatacacaagcagctcc 629 |||||| ||| || |||||| |||||||| | ||| ||| || |||| ||| ||||| Sbjct: 463 ttggagattaagggtgagtagagtgctttggtaaacgcattggcatacgcaataagctca 404 Query: 630 tcggaaaactgcttctttgcagaatcatcaggaagcaatgcagggccatcgaaattgctg 689 || | |||||| |||| ||| ||| ||||| |||| ||||||||| ||||||| |||| Sbjct: 403 tcagcaaactgtctcttctcaggatcttcagggagcagtgcagggccttcgaaatggctg 344 Query: 690 tcaatgtacttgaccaaatccaagctctc 718 || |||||||||| |||||| || ||||| Sbjct: 343 tcgatgtacttgatcaaatctaaactctc 315
>emb|Y17386.1|TAE17386 Triticum aestivum mRNA for putative In2.1-like protein Length = 1031 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 659 aggaagcaatgcagggccatcgaaattgctgtcaatgtacttgaccaaatccaagctctc 718 |||||||| ||| ||||| | ||||||| |||| |||||||||| ||||||||||||||| Sbjct: 380 aggaagcagtgccgggccttggaaattggtgtcgatgtacttgatcaaatccaagctctc 321 Query: 719 tcc 721 ||| Sbjct: 320 tcc 318 Score = 56.0 bits (28), Expect = 2e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 459 gcaatgtccaccaaactgaactggccaaggaagaaagggccatcactaaactttcccagg 518 |||||||||||||| || || |||||||||||||| ||||| || || ||||| |||| Sbjct: 580 gcaatgtccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagg 521 Query: 519 gcggcttctattttatccagcgcagcaacagtttcctctg 558 || ||||| || || || || |||||||||| ||| |||| Sbjct: 520 gcagcttcgatcttgtctagagcagcaacagcttcgtctg 481
>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 678 tcgaaattgctgtcaatgtacttgaccaaatccaagctctctccttt 724 ||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 241506 tcgaagttgctgtcaatatacttaaccaaatccaagctctctccttt 241460
>gb|AY664415.1| Zea mays cultivar B73 locus 9009, complete sequence Length = 323584 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Minus Query: 678 tcgaaattgctgtcaatgtacttgaccaaatccaagctctctccttt 724 ||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 226994 tcgaagttgctgtcaatatacttaaccaaatccaagctctctccttt 226948
>ref|NM_120356.2| Arabidopsis thaliana unknown protein AT5G02780 mRNA, complete cds Length = 812 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 440 ttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggcc 499 |||||||||||| | ||||||||| || |||||||| | || ||||||||||||||| || Sbjct: 555 ttcgataaatgggatatatgcaatatcaaccaaactaagctcgccaaggaagaaaggacc 496 Query: 500 atcactaaacttt 512 |||| ||||||| Sbjct: 495 atcatcaaacttt 483
>gb|BT012424.1| Arabidopsis thaliana At5g02780 mRNA, complete cds Length = 714 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 440 ttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggcc 499 |||||||||||| | ||||||||| || |||||||| | || ||||||||||||||| || Sbjct: 555 ttcgataaatgggatatatgcaatatcaaccaaactaagctcgccaaggaagaaaggacc 496 Query: 500 atcactaaacttt 512 |||| ||||||| Sbjct: 495 atcatcaaacttt 483
>gb|BT010718.1| Arabidopsis thaliana At5g02780 mRNA, complete cds Length = 993 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 440 ttcgataaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggcc 499 |||||||||||| | ||||||||| || |||||||| | || ||||||||||||||| || Sbjct: 636 ttcgataaatgggatatatgcaatatcaaccaaactaagctcgccaaggaagaaaggacc 577 Query: 500 atcactaaacttt 512 |||| ||||||| Sbjct: 576 atcatcaaacttt 564
>ref|XM_493843.1| Oryza sativa (japonica cultivar-group), mRNA Length = 885 Score = 61.9 bits (31), Expect = 3e-06 Identities = 132/163 (80%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 342 gcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttg-gtgat 400 |||||||||||||||| ||||| ||||| |||| ||||||| || ||||| || || Sbjct: 644 gcatcgatcttgttcaattccttaatgaaaatctgtatgttagccct-tccttcagtaat 586 Query: 401 atcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacatatgc 460 ||||||||| ||||| |||| ||| | | ||||||| | || ||||| || |||| || Sbjct: 585 atcatagttctttatgccagcaaacagtgtctgaaatccatcaataaaaggtgcatacgc 526 Query: 461 aatgtccaccaaactgaactggccaaggaagaaagggccatca 503 |||||| |||| ||| || |||||||||||||| ||||||||| Sbjct: 525 aatgtcaaccagactaaattggccaaggaagaatgggccatca 483 Score = 44.1 bits (22), Expect = 0.64 Identities = 64/78 (82%) Strand = Plus / Minus Query: 644 ctttgcagaatcatcaggaagcaatgcagggccatcgaaattgctgtcaatgtacttgac 703 |||| |||||||||||||| |||| ||||| | || ||| |||| |||||||||| Sbjct: 342 cttttcagaatcatcaggagtcaatctggggcctgcaaagttgatgtctatgtacttgat 283 Query: 704 caaatccaagctctctcc 721 ||||||||| |||||||| Sbjct: 282 caaatccaaactctctcc 265
>gb|AY332468.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase (GST) mRNA, complete cds Length = 1092 Score = 61.9 bits (31), Expect = 3e-06 Identities = 132/163 (80%), Gaps = 2/163 (1%) Strand = Plus / Minus Query: 342 gcatcgatcttgttcacttcctcgatgaatttctgaatgttaggtctgtccttg-gtgat 400 |||||||||||||||| ||||| ||||| |||| ||||||| || ||||| || || Sbjct: 682 gcatcgatcttgttcaattccttaatgaaaatctgtatgttagccct-tccttcagtaat 624 Query: 401 atcatagttttttataccagaaaagaatatctgaaacctttcgataaatggcacatatgc 460 ||||||||| ||||| |||| ||| | | ||||||| | || ||||| || |||| || Sbjct: 623 atcatagttctttatgccagcaaacagtgtctgaaatccatcaataaaaggtgcatacgc 564 Query: 461 aatgtccaccaaactgaactggccaaggaagaaagggccatca 503 |||||| |||| ||| || |||||||||||||| ||||||||| Sbjct: 563 aatgtcaaccagactaaattggccaaggaagaatgggccatca 521
>gb|DQ450070.1| Arachis hypogaea clone 7A4R17G putative IN2-1 protein mRNA, partial cds Length = 625 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 330 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 371 |||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 356 gtttgtgtatatgcatcaatcttgttcacctcctcaatgaat 315
>gb|AF249913.1|AF249913 Glycine max In2-1 protein mRNA, complete cds Length = 1024 Score = 52.0 bits (26), Expect = 0.003 Identities = 50/58 (86%) Strand = Plus / Minus Query: 446 aaatggcacatatgcaatgtccaccaaactgaactggccaaggaagaaagggccatca 503 |||||| | ||| ||||| |||||||||||||| |||||||| ||||| || |||||| Sbjct: 573 aaatggaatataagcaatatccaccaaactgaattggccaagcaagaatggcccatca 516
>gb|DQ294619.1| Arachis hypogaea IN2-1 protein-like mRNA, partial sequence Length = 425 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 330 gtttgtgtgtatgcatcgatcttgttcacttcctcgatgaat 371 |||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 388 gtttgtgtatatgcatcaatcttgttcacctcctcaatgaat 347
>emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chromosome 9, complete sequence Length = 196093 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 144 tagcatgcatctttttattcat 165 |||||||||||||||||||||| Sbjct: 120526 tagcatgcatctttttattcat 120547
>emb|AL355816.14| Human DNA sequence from clone RP5-1180E21 on chromosome 1 Contains a gene for a novel protein (DKFZp313E1815), a gene for choline/ethanolaminephosphotransferase (CEPT1), a gene (FLJ22457) for a novel protein, the 5' end of a novel transcript (DKFZp313J1722) and a CpG island, complete sequence Length = 141686 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 tgatatcatagttttttatacc 418 |||||||||||||||||||||| Sbjct: 37946 tgatatcatagttttttatacc 37925
>emb|CR626576.1| full-length cDNA clone CS0DI006YB10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1243 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 tgatatcatagttttttatacc 418 |||||||||||||||||||||| Sbjct: 1032 tgatatcatagttttttatacc 1053
>emb|CR613969.1| full-length cDNA clone CS0DI042YD14 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1726 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 tgatatcatagttttttatacc 418 |||||||||||||||||||||| Sbjct: 1187 tgatatcatagttttttatacc 1208
>emb|CR607093.1| full-length cDNA clone CS0DI013YN23 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1855 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 tgatatcatagttttttatacc 418 |||||||||||||||||||||| Sbjct: 1292 tgatatcatagttttttatacc 1313
>emb|AL833098.1|HSM804409 Homo sapiens mRNA; cDNA DKFZp313E1815 (from clone DKFZp313E1815) Length = 1937 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 397 tgatatcatagttttttatacc 418 |||||||||||||||||||||| Sbjct: 1677 tgatatcatagttttttatacc 1698
>gb|AC135230.8| Medicago truncatula clone mth2-23e14, complete sequence Length = 124972 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 acacaacacaagatgatgttc 39 ||||||||||||||||||||| Sbjct: 93384 acacaacacaagatgatgttc 93364
>gb|AC137829.23| Medicago truncatula clone mth2-34j5, complete sequence Length = 127295 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 acacaacacaagatgatgttc 39 ||||||||||||||||||||| Sbjct: 33097 acacaacacaagatgatgttc 33117
>emb|AL162973.1|ATF9G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F9G14 (ESSA project) Length = 104769 Score = 42.1 bits (21), Expect = 2.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 468 accaaactgaactggccaaggaagaaagggccatcactaaacttt 512 |||||||| | || ||||||||||||||| |||||| ||||||| Sbjct: 27437 accaaactaagctcgccaaggaagaaaggaccatcatcaaacttt 27393
>gb|AC010809.10| Homo sapiens, clone RP11-3D4, complete sequence Length = 173087 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 tctccatcttccatgctgcag 235 ||||||||||||||||||||| Sbjct: 54117 tctccatcttccatgctgcag 54137
>gb|AC157276.2| Mus musculus BAC clone RP23-426N20 from chromosome 12, complete sequence Length = 220385 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 644 ctttgcagaatcatcaggaagcaat 668 |||||||||||||||| |||||||| Sbjct: 41352 ctttgcagaatcatcatgaagcaat 41328
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 caaactgaactggccaagga 489 |||||||||||||||||||| Sbjct: 1599982 caaactgaactggccaagga 1599963
>ref|XM_587292.2| PREDICTED: Bos taurus GABA transporter GAT-1 homolog (LOC407118), mRNA Length = 4183 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 gctcctcggaaaactgcttc 644 |||||||||||||||||||| Sbjct: 2626 gctcctcggaaaactgcttc 2645
>gb|AC140182.2| Mus musculus BAC clone RP24-349I16 from chromosome 8, complete sequence Length = 151221 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 tagttttttataccagaaaa 424 |||||||||||||||||||| Sbjct: 85488 tagttttttataccagaaaa 85507
>gb|BC038586.1| Homo sapiens zinc finger protein 490, mRNA (cDNA clone MGC:46699 IMAGE:5587423), complete cds Length = 6372 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tgtgttgaagcagaaattgt 317 |||||||||||||||||||| Sbjct: 33 tgtgttgaagcagaaattgt 52
>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome 19 Length = 413528 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 agaaattgtgggtccagctt 328 |||||||||||||||||||| Sbjct: 214916 agaaattgtgggtccagctt 214897
>ref|NM_020714.1| Homo sapiens zinc finger protein 490 (ZNF490), mRNA Length = 6372 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tgtgttgaagcagaaattgt 317 |||||||||||||||||||| Sbjct: 33 tgtgttgaagcagaaattgt 52
>emb|CT009607.7| Mouse DNA sequence from clone RP23-134I10 on chromosome 17, complete sequence Length = 195995 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ttttttataccagaaaagaa 427 |||||||||||||||||||| Sbjct: 86840 ttttttataccagaaaagaa 86821
>gb|AC108830.13| Mus musculus chromosome 8, clone RP23-232G11, complete sequence Length = 200841 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ggcctctgttcatgcttggtcata 268 ||||||||| |||||||||||||| Sbjct: 126645 ggcctctgtacatgcttggtcata 126622
>gb|AC123826.4| Mus musculus BAC clone RP24-97K3 from chromosome 8, complete sequence Length = 188704 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 tagttttttataccagaaaa 424 |||||||||||||||||||| Sbjct: 28692 tagttttttataccagaaaa 28711
>gb|AC123068.4| Mus musculus BAC clone RP23-21P10 from 1, complete sequence Length = 221464 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ccctggcctctgttcatgct 260 |||||||||||||||||||| Sbjct: 82526 ccctggcctctgttcatgct 82507
>gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete sequence Length = 124828 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 aaacgtgcttaaaatactat 97 |||||||||||||||||||| Sbjct: 71551 aaacgtgcttaaaatactat 71532
>gb|AC161594.3| Mus musculus BAC clone RP24-153G11 from chromosome 1, complete sequence Length = 180135 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 taaaatactataatcacaatcaac 110 |||||||||||||||| ||||||| Sbjct: 75399 taaaatactataatcaaaatcaac 75422
>emb|AL513124.9| Human DNA sequence from clone RP11-401G5 on chromosome 9 Contains a uncharacterized hypothalamus protein HT007 pseudogene, complete sequence Length = 172766 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 140 ttagtagcatgcatctttttattcatag 167 ||||| |||||||||||| ||||||||| Sbjct: 53598 ttagttgcatgcatctttatattcatag 53571
>emb|AL117336.22|HSA324I22 Human DNA sequence from clone RP11-324I22 on chromosome 10 Contains the 3' end of the CREM gene for cAMP responsive element modulator, the 5' end of the gene for cyclin fold protein 1 (CFP1) (CBCP1), two novel genes, a novel gene containing part of FLJ32718 and two CpG islands, complete sequence Length = 190690 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 taatttattctcaaaaggca 134 |||||||||||||||||||| Sbjct: 159413 taatttattctcaaaaggca 159394
>gb|AE014276.1| Streptococcus agalactiae 2603V/R section 86 of 100 of the complete genome Length = 20741 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 tttctgaatgttaggtctgt 390 |||||||||||||||||||| Sbjct: 7262 tttctgaatgttaggtctgt 7281
>gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome 8, complete sequence Length = 234359 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ccgcaatcacaaaacgtgct 86 |||||||||||||||||||| Sbjct: 28055 ccgcaatcacaaaacgtgct 28074
>gb|AC010422.7| Homo sapiens chromosome 19 clone CTD-2192J16, complete sequence Length = 203790 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tgtgttgaagcagaaattgt 317 |||||||||||||||||||| Sbjct: 75332 tgtgttgaagcagaaattgt 75351
>gb|AC003105.3| Arabidopsis thaliana chromosome 2 clone F18A8 map B68, complete sequence Length = 95167 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 aacagtttcctctgcaacat 564 |||||||||||||||||||| Sbjct: 11075 aacagtttcctctgcaacat 11056
>gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome 8, complete sequence Length = 207128 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 ccgcaatcacaaaacgtgct 86 |||||||||||||||||||| Sbjct: 133333 ccgcaatcacaaaacgtgct 133352
>dbj|AB087837.1| Pisum sativum GST mRNA for glutathione S-transferase, partial cds Length = 990 Score = 40.1 bits (20), Expect = 9.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 459 gcaatgtccaccaaactgaactggccaaggaagaaagggccatc 502 ||||| |||||||||||||| || ||||| | ||| |||||||| Sbjct: 550 gcaatatccaccaaactgaattgaccaagaaggaaggggccatc 507
>gb|AC023172.1|AC023172 Homo sapiens chromosome 19, cosmid F22376, complete sequence Length = 42547 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 agaaattgtgggtccagctt 328 |||||||||||||||||||| Sbjct: 25647 agaaattgtgggtccagctt 25628
>gb|AF132475.1|AF132475 Arabidopsis thaliana cultivar Col-0 heme oxygenase 1 (HO1) gene, nuclear gene encoding chloroplast protein, complete cds Length = 3270 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 aacagtttcctctgcaacat 564 |||||||||||||||||||| Sbjct: 380 aacagtttcctctgcaacat 361
>gb|AC103618.6| Mus musculus chromosome 1, clone RP24-202B6, complete sequence Length = 141016 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 tatatactacagtagcaagcaaga 196 ||||||||||||||||||| |||| Sbjct: 94102 tatatactacagtagcaaggaaga 94079
>gb|AC132365.4| Mus musculus BAC clone RP23-459M5 from 6, complete sequence Length = 162524 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 ggccaaggaagaaagggcca 500 |||||||||||||||||||| Sbjct: 135299 ggccaaggaagaaagggcca 135280
>gb|DQ298753.1| Homo sapiens cytochrome P450, family 2, subfamily B, polypeptide 6 (CYP2B6) gene, complete cds Length = 29315 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 agaaattgtgggtccagctt 328 |||||||||||||||||||| Sbjct: 22053 agaaattgtgggtccagctt 22034
>gb|AC163341.5| Mus musculus BAC clone RP24-138G13 from chromosome 6, complete sequence Length = 179417 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 ggccaaggaagaaagggcca 500 |||||||||||||||||||| Sbjct: 35017 ggccaaggaagaaagggcca 34998
>emb|AL645508.14| Mouse DNA sequence from clone RP23-170H12 on chromosome 4, complete sequence Length = 207485 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 cagaatcatcaggaagcaat 668 |||||||||||||||||||| Sbjct: 139902 cagaatcatcaggaagcaat 139921
>gb|AC151905.4| Mus musculus BAC clone RP23-205J22 from chromosome 8, complete sequence Length = 214760 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 ggcctctgttcatgcttggtcata 268 ||||||||| |||||||||||||| Sbjct: 150576 ggcctctgtacatgcttggtcata 150599
>emb|AL591946.14| Mouse DNA sequence from clone RP23-290M7 on chromosome 15, complete sequence Length = 188892 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gttccctggcctctgttcat 257 |||||||||||||||||||| Sbjct: 158930 gttccctggcctctgttcat 158911
>dbj|AB021857.1| Arabidopsis thaliana HY1 gene for plastid heme oxygenase, complete cds Length = 2867 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 aacagtttcctctgcaacat 564 |||||||||||||||||||| Sbjct: 303 aacagtttcctctgcaacat 284
>dbj|AB033024.1| Homo sapiens mRNA for KIAA1198 protein, partial cds Length = 6090 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tgtgttgaagcagaaattgt 317 |||||||||||||||||||| Sbjct: 44 tgtgttgaagcagaaattgt 63
>emb|AL671905.4| Mouse DNA sequence from clone RP23-239H22 on chromosome X, complete sequence Length = 140012 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 200 ctcctgattgtctagtctccatcttcca 227 ||||||||| ||| |||||||||||||| Sbjct: 9671 ctcctgattctcttgtctccatcttcca 9644 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,434,827 Number of Sequences: 3902068 Number of extensions: 7434827 Number of successful extensions: 137546 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137301 Number of HSP's gapped (non-prelim): 242 length of query: 724 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 701 effective length of database: 17,143,297,704 effective search space: 12017451690504 effective search space used: 12017451690504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
