ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NCPR_ASPNG (Q00141) NADPH--cytochrome P450 reductase (EC 1.6.2.4... 32 1.0
2OR5L1_HUMAN (Q8NGL2) Olfactory receptor 5L1 (OST262) 31 1.7
3XYLH_SHIFL (P0AGI7) Xylose transport system permease protein xyl... 29 5.0
4XYLH_ECOLI (P0AGI4) Xylose transport system permease protein xyl... 29 5.0
5XYLH_ECOL6 (P0AGI5) Xylose transport system permease protein xyl... 29 5.0
6XYLH_ECO57 (P0AGI6) Xylose transport system permease protein xyl... 29 5.0
7NU1M_DROGU (P51931) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 28 8.6
8YFE2_YEAST (P43560) Hypothetical 76.3 kDa protein in SEC53-FET5 ... 28 8.6

>NCPR_ASPNG (Q00141) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)|
           (P450R)
          Length = 693

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
 Frame = +3

Query: 162 MLQQAKLLSKISVLTSSTETCSILI-----YRSLAYKLFTS*VVA---IKTDMRLEDVKL 317
           MLQ A+ L  I+    S    S+LI      +   Y + +S +V    I     +E V+L
Sbjct: 416 MLQHAQALQSITSKPFSAVPFSLLIEGITKLQPRYYSISSSSLVQKDKISITAVVESVRL 475

Query: 318 PSVHHVQKNADTEYTPVRKIFATGRSLTR 404
           P   H+ K   T Y    K    GRSL+R
Sbjct: 476 PGASHMVKGVTTNYLLALKQKQNGRSLSR 504



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>OR5L1_HUMAN (Q8NGL2) Olfactory receptor 5L1 (OST262)|
          Length = 311

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 201 VQISWKVALLVAACHFSLATCCNLRVICLCL 109
           V +SWKV + +A+C +   T C+L  +CL L
Sbjct: 134 VTMSWKVRVELASCCYFCGTVCSLIHLCLAL 164



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>XYLH_SHIFL (P0AGI7) Xylose transport system permease protein xylH (EC|
           3.6.3.17)
          Length = 393

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -3

Query: 376 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 209
           + +  + ++  FF TW T+G++ S+R +S L+  T  +  + A  +   I+   +D
Sbjct: 31  VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84



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>XYLH_ECOLI (P0AGI4) Xylose transport system permease protein xylH (EC|
           3.6.3.17)
          Length = 393

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -3

Query: 376 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 209
           + +  + ++  FF TW T+G++ S+R +S L+  T  +  + A  +   I+   +D
Sbjct: 31  VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84



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>XYLH_ECOL6 (P0AGI5) Xylose transport system permease protein xylH (EC|
           3.6.3.17)
          Length = 393

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -3

Query: 376 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 209
           + +  + ++  FF TW T+G++ S+R +S L+  T  +  + A  +   I+   +D
Sbjct: 31  VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84



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>XYLH_ECO57 (P0AGI6) Xylose transport system permease protein xylH (EC|
           3.6.3.17)
          Length = 393

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = -3

Query: 376 IFLTGVYSVSAFFCTWCTEGSFTSSRRISVLIATT*EVKSLYARDL*ISILQVSVD 209
           + +  + ++  FF TW T+G++ S+R +S L+  T  +  + A  +   I+   +D
Sbjct: 31  VMIAAIIAIMLFF-TWTTDGAYLSARNVSNLLRQT-AITGILAVGMVFVIISAEID 84



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>NU1M_DROGU (P51931) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1) (Fragments)
          Length = 163

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 377 YLSYWSIFCISIFLHMVHRRKLHVLEAHICFNSYNLGGEEFVCQRSVN*YT 225
           YLSY+     S+FL +        +   +  NS+NLGG  F+C  S+  YT
Sbjct: 72  YLSYYISPIFSLFLSLF---VWMCMPFFVKLNSFNLGGLFFLCCTSLGVYT 119



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>YFE2_YEAST (P43560) Hypothetical 76.3 kDa protein in SEC53-FET5 intergenic|
           region
          Length = 674

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 332 MVHRRKLHVLEAHICFNSYNLG 267
           ++++ KL++ E H+CFNS  LG
Sbjct: 225 LLYQGKLYITETHLCFNSNVLG 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,455,193
Number of Sequences: 219361
Number of extensions: 1403042
Number of successful extensions: 3449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3449
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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