Clone Information

BLAST Search Result

Clone Name	rbags30m22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	321	2e-84
2	dbj\|AK122089.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	321	2e-84
3	dbj\|AK100920.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	321	2e-84
4	dbj\|AK066087.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	321	2e-84
5	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	321	2e-84
6	emb\|AL713946.3\|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005...	321	2e-84
7	emb\|AL928750.3\|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa...	321	2e-84
8	emb\|AM167973.1\| Zea mays mRNA for phosphomethylpyrimidine kinase...	192	1e-45
9	gb\|AF015310.1\|AF015310 Brassica napus BTH1 mRNA, complete cds	52	0.002
10	gb\|AY426752.1\| Nicotiana attenuata ACC synthase ACS1 (Acs1) mRNA...	44	0.58
11	gb\|AC155340.1\| Brassica rapa subsp. pekinensis chromosome Cytoge...	44	0.58
12	ref\|NM_102141.2\| Arabidopsis thaliana TH1 (THIAMINE REQUIRING 1)...	42	2.3
13	gb\|BT020417.1\| Arabidopsis thaliana At1g22940 mRNA, complete cds	42	2.3
14	emb\|AL359986.15\| Human DNA sequence from clone RP11-106M14 on ch...	42	2.3
15	emb\|AL356600.13\| Human DNA sequence from clone RP5-974J14 on chr...	42	2.3
16	emb\|BX572096.1\| Prochlorococcus marinus MIT9313 complete genome;...	42	2.3
17	emb\|AJ719989.1\| Gallus gallus mRNA for hypothetical protein, clo...	42	2.3
18	ref\|NM_001012796.1\| Gallus gallus RAB14, member RAS oncogene fam...	42	2.3
19	gb\|AY128364.1\| Arabidopsis thaliana phosphomethylpyrimidine kina...	42	2.3
20	gb\|AC022449.5\| Homo sapiens chromosome 5 clone RP11-93O7, comple...	42	2.3
21	gb\|AC113484.14\| Mus musculus chromosome 8, clone RP23-343H23, co...	42	2.3
22	emb\|CR774199.4\| Zebrafish DNA sequence from clone CH211-42H24 in...	42	2.3
23	gb\|CP000009.1\| Gluconobacter oxydans 621H, complete genome	42	2.3
24	gb\|AF000657.1\|ATAF000657 Arabidopsis thaliana BAC F19G10, comple...	42	2.3
25	gb\|AC169675.2\| Mus musculus BAC clone RP24-200J3 from chromosome...	40	9.0
26	gb\|AC124083.14\| Mus musculus chromosome 5, clone RP24-400H4, com...	40	9.0
27	gb\|AE017180.1\| Geobacter sulfurreducens PCA, complete genome	40	9.0
28	gb\|CP000117.1\| Anabaena variabilis ATCC 29413 chromosome, comple...	40	9.0
29	gb\|AC163038.5\| Mus musculus BAC clone RP23-180A14 from chromosom...	40	9.0
30	emb\|AL133406.14\| Human DNA sequence from clone RP3-355L5 on chro...	40	9.0
31	gb\|AC175202.2\| Sporobolomyces roseus clone JGIBAIF-37E14, comple...	40	9.0
32	emb\|BX548044.10\| Zebrafish DNA sequence from clone DKEY-10B15 in...	40	9.0
33	emb\|BX470068.7\| Zebrafish DNA sequence from clone CH211-219C8 in...	40	9.0
34	gb\|AC160763.3\| Mus musculus BAC clone RP23-238A4 from chromosome...	40	9.0
35	gb\|AC155231.2\| Mus musculus BAC clone RP24-336I23 from chromosom...	40	9.0
36	gb\|AC023344.4\|AC023344 Homo sapiens BAC clone RP11-395G23 from 8...	40	9.0
37	gb\|AC114814.5\| Homo sapiens BAC clone RP11-1345D17 from 2, compl...	40	9.0
38	gb\|AC154561.2\| Mus musculus BAC clone RP23-400M17 from chromosom...	40	9.0
39	gb\|AC092576.3\| Homo sapiens BAC clone RP11-7N16 from 2, complete...	40	9.0
40	emb\|BX470223.14\| Zebrafish DNA sequence from clone DKEY-45P9 in ...	40	9.0
41	dbj\|BA000019.2\| Nostoc sp. PCC 7120 DNA, complete genome	40	9.0
42	gb\|AY530950.1\| Zea mays putative zinc finger protein (Z438D03.1)...	40	9.0
43	gb\|AF466202.2\| Zea mays putative pol protein gene, partial cds; ...	40	9.0
44	gb\|AF123535.1\| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh...	40	9.0
45	emb\|CT823560.2\| Human DNA sequence from clone XX-HCC1954_31G13, ...	40	9.0
46	emb\|AL133162.4\|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2...	40	9.0
47	gb\|AY691949.1\| Zea mays alcohol dehydrogenase 1 (adh1A) gene, co...	40	9.0
48	dbj\|AP000429.3\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.0
49	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	9.0
50	gb\|AC171111.2\| Mus musculus BAC clone RP24-131J20 from chromosom...	40	9.0
51	dbj\|AP003353.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	9.0

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  321 bits (162), Expect = 2e-84
 Identities = 360/426 (84%)
 Strand = Plus / Minus

                                                                           
Query: 219     acggtcgaacaaagcagagaccacggcgacgcctttgagattggggaggcggagttccat 278
               |||||| |||| ||| ||||| || |||||||||||||| || ||||| |  || |||||
Sbjct: 4709919 acggtcaaacagagcggagactactgcgacgcctttgaggtttgggagaccaagctccat 4709860

                                                                           
Query: 279     caccgaacctgcatttgttgtgttgatgccaccaatggcaaccacaggcaactttgaagc 338
               ||| |||||||||||||  | ||||||||| ||||| || |||||||||| ||| || ||
Sbjct: 4709859 cactgaacctgcatttgaagcgttgatgccgccaatagcgaccacaggcagcttagatgc 4709800

                                                                           
Query: 339     caggcagacagccttcagcccttcaaatcccaaggtgggattgttcgccttcgtcgtggt 398
               |||||| || | |||||  || ||||| ||||| || ||||||||||||||||| | |||
Sbjct: 4709799 caggcaaactgtcttcaagccatcaaaccccaatgtaggattgttcgccttcgtggaggt 4709740

                                                                           
Query: 399     tgggaagacgccgccgcagccgaggtagtccgccccgtctctccaagcctgctcggcttg 458
                ||||| || ||||| ||||| | |||||| || || ||  |||| ||||||| ||||||
Sbjct: 4709739 agggaaaacaccgccacagccaatgtagtctgctccatcattccaggcctgctgggcttg 4709680

                                                                           
Query: 459     agcaggggtcttgcacgagacaccgatgattttacccggtcctaggagctcccgaacctc 518
               ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 4709679 agcaggggtcttgcacgagacgccgatgattttacccggccctaggagctcccgcacttc 4709620

                                                                           
Query: 519     ccgtgctgaaatgtctgattggccaacatggacaccgtcagcattgcacgccagggcaat 578
                 |||| || |||||  |||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 4709619 gtgtgccgacatgtccaattgaccaacatggacaccatctgcattgcatgccagggcaat 4709560

                                                                           
Query: 579     gtctacacggtcgttgatcagcagcgacactccacttgacttgcaaatctccatgcaagc 638
               |||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||| ||
Sbjct: 4709559 gtctacccggtcgttgatcagcagtggtactccactggacttgcaaatctccatgcatgc 4709500

                     
Query: 639     cttggc 644
                |||||
Sbjct: 4709499 tttggc 4709494

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>dbj|AK122089.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123K02, full
            insert sequence
          Length = 1895

 Score =  321 bits (162), Expect = 2e-84
 Identities = 360/426 (84%)
 Strand = Plus / Minus

                                                                        
Query: 219  acggtcgaacaaagcagagaccacggcgacgcctttgagattggggaggcggagttccat 278
            |||||| |||| ||| ||||| || |||||||||||||| || ||||| |  || |||||
Sbjct: 1563 acggtcaaacagagcggagactactgcgacgcctttgaggtttgggagaccaagctccat 1504

                                                                        
Query: 279  caccgaacctgcatttgttgtgttgatgccaccaatggcaaccacaggcaactttgaagc 338
            ||| |||||||||||||  | ||||||||| ||||| || |||||||||| ||| || ||
Sbjct: 1503 cactgaacctgcatttgaagcgttgatgccgccaatagcgaccacaggcagcttagatgc 1444

                                                                        
Query: 339  caggcagacagccttcagcccttcaaatcccaaggtgggattgttcgccttcgtcgtggt 398
            |||||| || | |||||  || ||||| ||||| || ||||||||||||||||| | |||
Sbjct: 1443 caggcaaactgtcttcaagccatcaaaccccaatgtaggattgttcgccttcgtggaggt 1384

                                                                        
Query: 399  tgggaagacgccgccgcagccgaggtagtccgccccgtctctccaagcctgctcggcttg 458
             ||||| || ||||| ||||| | |||||| || || ||  |||| ||||||| ||||||
Sbjct: 1383 agggaaaacaccgccacagccaatgtagtctgctccatcattccaggcctgctgggcttg 1324

                                                                        
Query: 459  agcaggggtcttgcacgagacaccgatgattttacccggtcctaggagctcccgaacctc 518
            ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 1323 agcaggggtcttgcacgagacgccgatgattttacccggccctaggagctcccgcacttc 1264

                                                                        
Query: 519  ccgtgctgaaatgtctgattggccaacatggacaccgtcagcattgcacgccagggcaat 578
              |||| || |||||  |||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 1263 gtgtgccgacatgtccaattgaccaacatggacaccatctgcattgcatgccagggcaat 1204

                                                                        
Query: 579  gtctacacggtcgttgatcagcagcgacactccacttgacttgcaaatctccatgcaagc 638
            |||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||| ||
Sbjct: 1203 gtctacccggtcgttgatcagcagtggtactccactggacttgcaaatctccatgcatgc 1144

                  
Query: 639  cttggc 644
             |||||
Sbjct: 1143 tttggc 1138

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>dbj|AK100920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133M06, full
            insert sequence
          Length = 2060

 Score =  321 bits (162), Expect = 2e-84
 Identities = 360/426 (84%)
 Strand = Plus / Minus

                                                                        
Query: 219  acggtcgaacaaagcagagaccacggcgacgcctttgagattggggaggcggagttccat 278
            |||||| |||| ||| ||||| || |||||||||||||| || ||||| |  || |||||
Sbjct: 1644 acggtcaaacagagcggagactactgcgacgcctttgaggtttgggagaccaagctccat 1585

                                                                        
Query: 279  caccgaacctgcatttgttgtgttgatgccaccaatggcaaccacaggcaactttgaagc 338
            ||| |||||||||||||  | ||||||||| ||||| || |||||||||| ||| || ||
Sbjct: 1584 cactgaacctgcatttgaagcgttgatgccgccaatagcgaccacaggcagcttagatgc 1525

                                                                        
Query: 339  caggcagacagccttcagcccttcaaatcccaaggtgggattgttcgccttcgtcgtggt 398
            |||||| || | |||||  || ||||| ||||| || ||||||||||||||||| | |||
Sbjct: 1524 caggcaaactgtcttcaagccatcaaaccccaatgtaggattgttcgccttcgtggaggt 1465

                                                                        
Query: 399  tgggaagacgccgccgcagccgaggtagtccgccccgtctctccaagcctgctcggcttg 458
             ||||| || ||||| ||||| | |||||| || || ||  |||| ||||||| ||||||
Sbjct: 1464 agggaaaacaccgccacagccaatgtagtctgctccatcattccaggcctgctgggcttg 1405

                                                                        
Query: 459  agcaggggtcttgcacgagacaccgatgattttacccggtcctaggagctcccgaacctc 518
            ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 1404 agcaggggtcttgcacgagacgccgatgattttacccggccctaggagctcccgcacttc 1345

                                                                        
Query: 519  ccgtgctgaaatgtctgattggccaacatggacaccgtcagcattgcacgccagggcaat 578
              |||| || |||||  |||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 1344 gtgtgccgacatgtccaattgaccaacatggacaccatctgcattgcatgccagggcaat 1285

                                                                        
Query: 579  gtctacacggtcgttgatcagcagcgacactccacttgacttgcaaatctccatgcaagc 638
            |||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||| ||
Sbjct: 1284 gtctacccggtcgttgatcagcagtggtactccactggacttgcaaatctccatgcatgc 1225

                  
Query: 639  cttggc 644
             |||||
Sbjct: 1224 tttggc 1219

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>dbj|AK066087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D15, full
            insert sequence
          Length = 1880

 Score =  321 bits (162), Expect = 2e-84
 Identities = 360/426 (84%)
 Strand = Plus / Minus

                                                                        
Query: 219  acggtcgaacaaagcagagaccacggcgacgcctttgagattggggaggcggagttccat 278
            |||||| |||| ||| ||||| || |||||||||||||| || ||||| |  || |||||
Sbjct: 1633 acggtcaaacagagcggagactactgcgacgcctttgaggtttgggagaccaagctccat 1574

                                                                        
Query: 279  caccgaacctgcatttgttgtgttgatgccaccaatggcaaccacaggcaactttgaagc 338
            ||| |||||||||||||  | ||||||||| ||||| || |||||||||| ||| || ||
Sbjct: 1573 cactgaacctgcatttgaagcgttgatgccgccaatagcgaccacaggcagcttagatgc 1514

                                                                        
Query: 339  caggcagacagccttcagcccttcaaatcccaaggtgggattgttcgccttcgtcgtggt 398
            |||||| || | |||||  || ||||| ||||| || ||||||||||||||||| | |||
Sbjct: 1513 caggcaaactgtcttcaagccatcaaaccccaatgtaggattgttcgccttcgtggaggt 1454

                                                                        
Query: 399  tgggaagacgccgccgcagccgaggtagtccgccccgtctctccaagcctgctcggcttg 458
             ||||| || ||||| ||||| | |||||| || || ||  |||| ||||||| ||||||
Sbjct: 1453 agggaaaacaccgccacagccaatgtagtctgctccatcattccaggcctgctgggcttg 1394

                                                                        
Query: 459  agcaggggtcttgcacgagacaccgatgattttacccggtcctaggagctcccgaacctc 518
            ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 1393 agcaggggtcttgcacgagacgccgatgattttacccggccctaggagctcccgcacttc 1334

                                                                        
Query: 519  ccgtgctgaaatgtctgattggccaacatggacaccgtcagcattgcacgccagggcaat 578
              |||| || |||||  |||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 1333 gtgtgccgacatgtccaattgaccaacatggacaccatctgcattgcatgccagggcaat 1274

                                                                        
Query: 579  gtctacacggtcgttgatcagcagcgacactccacttgacttgcaaatctccatgcaagc 638
            |||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||| ||
Sbjct: 1273 gtctacccggtcgttgatcagcagtggtactccactggacttgcaaatctccatgcatgc 1214

                  
Query: 639  cttggc 644
             |||||
Sbjct: 1213 tttggc 1208

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  321 bits (162), Expect = 2e-84
 Identities = 360/426 (84%)
 Strand = Plus / Minus

                                                                           
Query: 219     acggtcgaacaaagcagagaccacggcgacgcctttgagattggggaggcggagttccat 278
               |||||| |||| ||| ||||| || |||||||||||||| || ||||| |  || |||||
Sbjct: 4709900 acggtcaaacagagcggagactactgcgacgcctttgaggtttgggagaccaagctccat 4709841

                                                                           
Query: 279     caccgaacctgcatttgttgtgttgatgccaccaatggcaaccacaggcaactttgaagc 338
               ||| |||||||||||||  | ||||||||| ||||| || |||||||||| ||| || ||
Sbjct: 4709840 cactgaacctgcatttgaagcgttgatgccgccaatagcgaccacaggcagcttagatgc 4709781

                                                                           
Query: 339     caggcagacagccttcagcccttcaaatcccaaggtgggattgttcgccttcgtcgtggt 398
               |||||| || | |||||  || ||||| ||||| || ||||||||||||||||| | |||
Sbjct: 4709780 caggcaaactgtcttcaagccatcaaaccccaatgtaggattgttcgccttcgtggaggt 4709721

                                                                           
Query: 399     tgggaagacgccgccgcagccgaggtagtccgccccgtctctccaagcctgctcggcttg 458
                ||||| || ||||| ||||| | |||||| || || ||  |||| ||||||| ||||||
Sbjct: 4709720 agggaaaacaccgccacagccaatgtagtctgctccatcattccaggcctgctgggcttg 4709661

                                                                           
Query: 459     agcaggggtcttgcacgagacaccgatgattttacccggtcctaggagctcccgaacctc 518
               ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 4709660 agcaggggtcttgcacgagacgccgatgattttacccggccctaggagctcccgcacttc 4709601

                                                                           
Query: 519     ccgtgctgaaatgtctgattggccaacatggacaccgtcagcattgcacgccagggcaat 578
                 |||| || |||||  |||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 4709600 gtgtgccgacatgtccaattgaccaacatggacaccatctgcattgcatgccagggcaat 4709541

                                                                           
Query: 579     gtctacacggtcgttgatcagcagcgacactccacttgacttgcaaatctccatgcaagc 638
               |||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||| ||
Sbjct: 4709540 gtctacccggtcgttgatcagcagtggtactccactggacttgcaaatctccatgcatgc 4709481

                     
Query: 639     cttggc 644
                |||||
Sbjct: 4709480 tttggc 4709475

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>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161762

 Score =  321 bits (162), Expect = 2e-84
 Identities = 360/426 (84%)
 Strand = Plus / Plus

                                                                          
Query: 219    acggtcgaacaaagcagagaccacggcgacgcctttgagattggggaggcggagttccat 278
              |||||| |||| ||| ||||| || |||||||||||||| || ||||| |  || |||||
Sbjct: 137212 acggtcaaacagagcggagactactgcgacgcctttgaggtttgggagaccaagctccat 137271

                                                                          
Query: 279    caccgaacctgcatttgttgtgttgatgccaccaatggcaaccacaggcaactttgaagc 338
              ||| |||||||||||||  | ||||||||| ||||| || |||||||||| ||| || ||
Sbjct: 137272 cactgaacctgcatttgaagcgttgatgccgccaatagcgaccacaggcagcttagatgc 137331

                                                                          
Query: 339    caggcagacagccttcagcccttcaaatcccaaggtgggattgttcgccttcgtcgtggt 398
              |||||| || | |||||  || ||||| ||||| || ||||||||||||||||| | |||
Sbjct: 137332 caggcaaactgtcttcaagccatcaaaccccaatgtaggattgttcgccttcgtggaggt 137391

                                                                          
Query: 399    tgggaagacgccgccgcagccgaggtagtccgccccgtctctccaagcctgctcggcttg 458
               ||||| || ||||| ||||| | |||||| || || ||  |||| ||||||| ||||||
Sbjct: 137392 agggaaaacaccgccacagccaatgtagtctgctccatcattccaggcctgctgggcttg 137451

                                                                          
Query: 459    agcaggggtcttgcacgagacaccgatgattttacccggtcctaggagctcccgaacctc 518
              ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 137452 agcaggggtcttgcacgagacgccgatgattttacccggccctaggagctcccgcacttc 137511

                                                                          
Query: 519    ccgtgctgaaatgtctgattggccaacatggacaccgtcagcattgcacgccagggcaat 578
                |||| || |||||  |||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 137512 gtgtgccgacatgtccaattgaccaacatggacaccatctgcattgcatgccagggcaat 137571

                                                                          
Query: 579    gtctacacggtcgttgatcagcagcgacactccacttgacttgcaaatctccatgcaagc 638
              |||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||| ||
Sbjct: 137572 gtctacccggtcgttgatcagcagtggtactccactggacttgcaaatctccatgcatgc 137631

                    
Query: 639    cttggc 644
               |||||
Sbjct: 137632 tttggc 137637

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>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147355

 Score =  321 bits (162), Expect = 2e-84
 Identities = 360/426 (84%)
 Strand = Plus / Plus

                                                                         
Query: 219   acggtcgaacaaagcagagaccacggcgacgcctttgagattggggaggcggagttccat 278
             |||||| |||| ||| ||||| || |||||||||||||| || ||||| |  || |||||
Sbjct: 42208 acggtcaaacagagcggagactactgcgacgcctttgaggtttgggagaccaagctccat 42267

                                                                         
Query: 279   caccgaacctgcatttgttgtgttgatgccaccaatggcaaccacaggcaactttgaagc 338
             ||| |||||||||||||  | ||||||||| ||||| || |||||||||| ||| || ||
Sbjct: 42268 cactgaacctgcatttgaagcgttgatgccgccaatagcgaccacaggcagcttagatgc 42327

                                                                         
Query: 339   caggcagacagccttcagcccttcaaatcccaaggtgggattgttcgccttcgtcgtggt 398
             |||||| || | |||||  || ||||| ||||| || ||||||||||||||||| | |||
Sbjct: 42328 caggcaaactgtcttcaagccatcaaaccccaatgtaggattgttcgccttcgtggaggt 42387

                                                                         
Query: 399   tgggaagacgccgccgcagccgaggtagtccgccccgtctctccaagcctgctcggcttg 458
              ||||| || ||||| ||||| | |||||| || || ||  |||| ||||||| ||||||
Sbjct: 42388 agggaaaacaccgccacagccaatgtagtctgctccatcattccaggcctgctgggcttg 42447

                                                                         
Query: 459   agcaggggtcttgcacgagacaccgatgattttacccggtcctaggagctcccgaacctc 518
             ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 42448 agcaggggtcttgcacgagacgccgatgattttacccggccctaggagctcccgcacttc 42507

                                                                         
Query: 519   ccgtgctgaaatgtctgattggccaacatggacaccgtcagcattgcacgccagggcaat 578
               |||| || |||||  |||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 42508 gtgtgccgacatgtccaattgaccaacatggacaccatctgcattgcatgccagggcaat 42567

                                                                         
Query: 579   gtctacacggtcgttgatcagcagcgacactccacttgacttgcaaatctccatgcaagc 638
             |||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||| ||
Sbjct: 42568 gtctacccggtcgttgatcagcagtggtactccactggacttgcaaatctccatgcatgc 42627

                   
Query: 639   cttggc 644
              |||||
Sbjct: 42628 tttggc 42633

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>emb|AM167973.1| Zea mays mRNA for phosphomethylpyrimidine kinase/thiamin-phosphate
            pyrophosphorylase (bth1 gene)
          Length = 1947

 Score =  192 bits (97), Expect = 1e-45
 Identities = 346/429 (80%)
 Strand = Plus / Minus

                                                                        
Query: 184  gatctgaggtttcttgtctcagtcgagacgcattcacggtcgaacaaagcagagaccacg 243
            |||||||||||||||||||||| || ||| | ||| ||||| |||| |||||||||||| 
Sbjct: 1670 gatctgaggtttcttgtctcagccgcgacacgttcccggtcaaacagagcagagaccaca 1611

                                                                        
Query: 244  gcgacgcctttgagattggggaggcggagttccatcaccgaacctgcatttgttgtgttg 303
            || || || || ||||| ||||| |  || ||||||||||| |||||||||   |  |||
Sbjct: 1610 gccacacccttcagatttgggagcccaagctccatcaccgagcctgcatttccagcattg 1551

                                                                        
Query: 304  atgccaccaatggcaaccacaggcaactttgaagccaggcagacagccttcagcccttca 363
            ||||| || ||||| |||||||| | ||| ||||| | ||| || | | |||  || || 
Sbjct: 1550 atgccgccgatggccaccacaggtagcttcgaagctaagcacacggtcctcaagccctcg 1491

                                                                        
Query: 364  aatcccaaggtgggattgttcgccttcgtcgtggttgggaagacgccgccgcagccgagg 423
            || || ||||| |||||||| |||||||||||||| |||||||| ||||| ||||||| |
Sbjct: 1490 aaccctaaggtaggattgtttgccttcgtcgtggtcgggaagacaccgccacagccgatg 1431

                                                                        
Query: 424  tagtccgccccgtctctccaagcctgctcggcttgagcaggggtcttgcacgagacaccg 483
            ||||| || || ||  |||| ||||||||||| || ||  ||||||| || ||||| |||
Sbjct: 1430 tagtctgcgccatccttccatgcctgctcggcctgggccagggtcttacatgagacgccg 1371

                                                                        
Query: 484  atgattttacccggtcctaggagctcccgaacctcccgtgctgaaatgtctgattggcca 543
            |||||||| || |||||||||||| | || || |||| |||||  |||||||||||||||
Sbjct: 1370 atgatttttccaggtcctaggagccctcgtacttcccatgctggtatgtctgattggcca 1311

                                                                        
Query: 544  acatggacaccgtcagcattgcacgccagggcaatgtctacacggtcgttgatcagcagc 603
            |||||||| ||  | || | ||| ||||| ||||  ||||| ||||| |||||||| |||
Sbjct: 1310 acatggacgccacctgcgtcgcatgccagagcaacatctactcggtcattgatcagtagc 1251

                     
Query: 604  gacactcca 612
            | |||||||
Sbjct: 1250 ggcactcca 1242

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>gb|AF015310.1|AF015310 Brassica napus BTH1 mRNA, complete cds
          Length = 1746

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 529  atgtctgattggccaacatggacaccgtcagcat 562
            ||||||||||||||||||||||| || |||||||
Sbjct: 1215 atgtctgattggccaacatggactccatcagcat 1182



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 310  ccaatggcaaccacaggcaactttga 335
            ||||| ||||||||||||||||||||
Sbjct: 1434 ccaatagcaaccacaggcaactttga 1409

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>gb|AY426752.1| Nicotiana attenuata ACC synthase ACS1 (Acs1) mRNA, complete cds
          Length = 2033

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 61   tgaatgtagattttcaggagta 82
            ||||||||||||||||||||||
Sbjct: 1952 tgaatgtagattttcaggagta 1931

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>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH020D15, complete sequence
          Length = 143633

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 529   atgtctgattggccaacatggacaccgtcagcat 562
             |||||||||||||| |||||||| || |||||||
Sbjct: 52261 atgtctgattggccgacatggactccatcagcat 52294



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 310   ccaatggcaaccacaggcaactttga 335
             ||||| ||||||||||||||||||||
Sbjct: 52042 ccaatagcaaccacaggcaactttga 52067

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>ref|NM_102141.2| Arabidopsis thaliana TH1 (THIAMINE REQUIRING 1);
            phosphomethylpyrimidine kinase/ thiamin-phosphate
            diphosphorylase AT1G22940 (TH1) mRNA, complete cds
          Length = 1762

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 529  atgtctgattggccaacatggacaccgtcagcattgcacgccagggcaatgtc 581
            ||||| ||||| ||||||||||| || |||||||  || || |||||||||||
Sbjct: 1226 atgtcggattgaccaacatggactccatcagcatcacaagcaagggcaatgtc 1174

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>gb|BT020417.1| Arabidopsis thaliana At1g22940 mRNA, complete cds
          Length = 1569

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 529  atgtctgattggccaacatggacaccgtcagcattgcacgccagggcaatgtc 581
            ||||| ||||| ||||||||||| || |||||||  || || |||||||||||
Sbjct: 1193 atgtcggattgaccaacatggactccatcagcatcacaagcaagggcaatgtc 1141

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>emb|AL359986.15| Human DNA sequence from clone RP11-106M14 on chromosome 10 Contains the
             PPP1R3C gene for protein phosphatase 1 regulatory
             (inhibitor) subunit 3C, a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene and a CpG island, complete
             sequence
          Length = 173119

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   cccttcaaatcccaaggtggg 377
             |||||||||||||||||||||
Sbjct: 38848 cccttcaaatcccaaggtggg 38868

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>emb|AL356600.13| Human DNA sequence from clone RP5-974J14 on chromosome 1p31.2-32.1
             Contains part of the NEGR1 gene for neuronal growth
             regulator 1 and part of a novel gene, complete sequence
          Length = 131457

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    attttcaggagtattacacct 90
             |||||||||||||||||||||
Sbjct: 47413 attttcaggagtattacacct 47433

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>emb|BX572096.1| Prochlorococcus marinus MIT9313 complete genome; segment 2/7
          Length = 349323

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 299   tgttgatgccaccaatggcaa 319
             |||||||||||||||||||||
Sbjct: 60520 tgttgatgccaccaatggcaa 60540

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>emb|AJ719989.1| Gallus gallus mRNA for hypothetical protein, clone 9b24
          Length = 2783

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 639 cttggcagcctccaggaatgc 659
           |||||||||||||||||||||
Sbjct: 704 cttggcagcctccaggaatgc 684

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>ref|NM_001012796.1| Gallus gallus RAB14, member RAS oncogene family (RAB14), mRNA
          Length = 2783

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 639 cttggcagcctccaggaatgc 659
           |||||||||||||||||||||
Sbjct: 704 cttggcagcctccaggaatgc 684

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>gb|AY128364.1| Arabidopsis thaliana phosphomethylpyrimidine kinase (At1g22940) mRNA,
            complete cds
          Length = 1765

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 529  atgtctgattggccaacatggacaccgtcagcattgcacgccagggcaatgtc 581
            ||||| ||||| ||||||||||| || |||||||  || || |||||||||||
Sbjct: 1230 atgtcggattgaccaacatggactccatcagcatcacaagcaagggcaatgtc 1178

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>gb|AC022449.5| Homo sapiens chromosome 5 clone RP11-93O7, complete sequence
          Length = 161121

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 634   caagccttggcagcctccagg 654
             |||||||||||||||||||||
Sbjct: 49300 caagccttggcagcctccagg 49320

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>gb|AC113484.14| Mus musculus chromosome 8, clone RP23-343H23, complete sequence
          Length = 176303

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 330   ctttgaagccaggcagacagc 350
             |||||||||||||||||||||
Sbjct: 90388 ctttgaagccaggcagacagc 90408

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>emb|CR774199.4| Zebrafish DNA sequence from clone CH211-42H24 in linkage group 14,
             complete sequence
          Length = 162722

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   tgacaaaacaaaagctctaag 150
             |||||||||||||||||||||
Sbjct: 63693 tgacaaaacaaaagctctaag 63713

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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 302   tgatgccaccaatggcaacca 322
             |||||||||||||||||||||
Sbjct: 14127 tgatgccaccaatggcaacca 14107

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>gb|AF000657.1|ATAF000657 Arabidopsis thaliana BAC F19G10, complete sequence
          Length = 92948

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 529   atgtctgattggccaacatggacaccgtcagcattgcacgccagggcaatgtc 581
             ||||| ||||| ||||||||||| || |||||||  || || |||||||||||
Sbjct: 46509 atgtcggattgaccaacatggactccatcagcatcacaagcaagggcaatgtc 46561

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>gb|AC169675.2| Mus musculus BAC clone RP24-200J3 from chromosome 17, complete sequence
          Length = 171242

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   attctcccttgacaaaacaa 140
             ||||||||||||||||||||
Sbjct: 82942 attctcccttgacaaaacaa 82961

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>gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, complete sequence
          Length = 172336

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     gtgaatgtagattttcagga 79
              ||||||||||||||||||||
Sbjct: 102734 gtgaatgtagattttcagga 102753

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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 568    gccagggcaatgtctacacggtcgttgatcag 599
              |||||||| ||||| || ||||||||||||||
Sbjct: 621225 gccagggcgatgtcgacccggtcgttgatcag 621256

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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    cttcagcccttcaaatccca 370
              ||||||||||||||||||||
Sbjct: 939917 cttcagcccttcaaatccca 939898

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>gb|AC163038.5| Mus musculus BAC clone RP23-180A14 from chromosome 13, complete sequence
          Length = 213865

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    aatggcaaccacaggcaact 331
              ||||||||||||||||||||
Sbjct: 142841 aatggcaaccacaggcaact 142822

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>emb|AL133406.14| Human DNA sequence from clone RP3-355L5 on chromosome 6q16.3-21
            Contains the 3' end of the PREP gene for prolyl
            endopeptidase, a ribosomal protein L7 (RPL7) pseudogene,
            a ribosomal protein L35 (RPL35) pseudogene and a putative
            novel gene (FLJ32396), complete sequence
          Length = 103421

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  aactttgaagccaggcagac 347
            ||||||||||||||||||||
Sbjct: 8266 aactttgaagccaggcagac 8247

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>gb|AC175202.2| Sporobolomyces roseus clone JGIBAIF-37E14, complete sequence
          Length = 41826

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   gtttcttgtctcagtcgaga 211
             ||||||||||||||||||||
Sbjct: 40878 gtttcttgtctcagtcgaga 40897

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>emb|BX548044.10| Zebrafish DNA sequence from clone DKEY-10B15 in linkage group 10,
              complete sequence
          Length = 250011

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 530    tgtctgattggccaacatgg 549
              ||||||||||||||||||||
Sbjct: 229648 tgtctgattggccaacatgg 229667

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>emb|BX470068.7| Zebrafish DNA sequence from clone CH211-219C8 in linkage group 1,
              complete sequence
          Length = 210511

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 526    gaaatgtctgattggccaacatgg 549
              ||||||||||||||||||| ||||
Sbjct: 135783 gaaatgtctgattggccaaaatgg 135806

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>gb|AC160763.3| Mus musculus BAC clone RP23-238A4 from chromosome 17, complete
            sequence
          Length = 215626

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 286  cctgcatttgttgtgttgat 305
            ||||||||||||||||||||
Sbjct: 5599 cctgcatttgttgtgttgat 5618

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>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence
          Length = 175296

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 638    ccttggcagcctccaggaat 657
              ||||||||||||||||||||
Sbjct: 115881 ccttggcagcctccaggaat 115900

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>gb|AC023344.4|AC023344 Homo sapiens BAC clone RP11-395G23 from 8, complete sequence
          Length = 186751

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gtgaatgtagattttcagga 79
              ||||||||||||||||||||
Sbjct: 150753 gtgaatgtagattttcagga 150734

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>gb|AC114814.5| Homo sapiens BAC clone RP11-1345D17 from 2, complete sequence
          Length = 181706

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    tgacaggagtgaaagcttat 122
              ||||||||||||||||||||
Sbjct: 169510 tgacaggagtgaaagcttat 169529

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>gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosome 17, complete
             sequence
          Length = 191047

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   cctgcatttgttgtgttgat 305
             ||||||||||||||||||||
Sbjct: 71104 cctgcatttgttgtgttgat 71085

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>gb|AC092576.3| Homo sapiens BAC clone RP11-7N16 from 2, complete sequence
          Length = 152747

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   tgacaggagtgaaagcttat 122
             ||||||||||||||||||||
Sbjct: 36337 tgacaggagtgaaagcttat 36356

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>emb|BX470223.14| Zebrafish DNA sequence from clone DKEY-45P9 in linkage group 10, complete
              sequence
          Length = 247644

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 530    tgtctgattggccaacatgg 549
              ||||||||||||||||||||
Sbjct: 102184 tgtctgattggccaacatgg 102165

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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 351     cttcagcccttcaaatccca 370
               ||||||||||||||||||||
Sbjct: 4985489 cttcagcccttcaaatccca 4985508

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>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
             epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
             unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
             complete cds
          Length = 185988

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ttgacaaaacaaaagctcta 148
             ||||||||||||||||||||
Sbjct: 81611 ttgacaaaacaaaagctcta 81592

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>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
              precursor -orf2, putative Fourf gag/pol protein, putative
              NADP-dependent malic enzyme, putative argonaute protein,
              putative pinhead protein, putative pol protein, putative
              gag protein, putative TNP2, r1-B73 proteins, putative
              genetic modifier, putative S-receptor kinase, putative
              aldose reductase-related protein, putative glutathione
              peroxidase, putative glycerol 3-phosphate permease,
              putative response regulator, and putative 4-coumarate-CoA
              ligase-like protein genes, complete cds
          Length = 290350

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    ttgacaaaacaaaagctcta 148
              ||||||||||||||||||||
Sbjct: 235279 ttgacaaaacaaaagctcta 235298

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>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete
             cds
          Length = 160480

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ttgacaaaacaaaagctcta 148
             ||||||||||||||||||||
Sbjct: 70202 ttgacaaaacaaaagctcta 70221

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>emb|CT823560.2| Human DNA sequence from clone XX-HCC1954_31G13, complete sequence
          Length = 134950

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gtgaatgtagattttcagga 79
             ||||||||||||||||||||
Sbjct: 75308 gtgaatgtagattttcagga 75289

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>emb|AL133162.4|CNS01DU5 Human chromosome 14 DNA sequence BAC C-2591A6 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196431

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 624   aatctccatgcaagccttgg 643
             ||||||||||||||||||||
Sbjct: 86766 aatctccatgcaagccttgg 86747

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>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf
             copia_LTR and Huck gypsy_LTR retrotransposons, complete
             sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR
             and Opie1 copia_LTR retrotransposons, complete sequence;
             Ji copia_LTR retrotransposon, complete sequence; and
             unknown protein (adh1B), cyclin H-1 (adh1C), unknown
             protein (adh1D), hypothetical protein (adh1E), and unknown
             protein (adh1F) genes, complete cds
          Length = 126039

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ttgacaaaacaaaagctcta 148
             ||||||||||||||||||||
Sbjct: 54976 ttgacaaaacaaaagctcta 54995

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>dbj|AP000429.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1535A3
          Length = 26872

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gtgaatgtagattttcagga 79
             ||||||||||||||||||||
Sbjct: 19360 gtgaatgtagattttcagga 19341

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     gggaagacgccgccgcagcc 419
               ||||||||||||||||||||
Sbjct: 3325921 gggaagacgccgccgcagcc 3325902

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>gb|AC171111.2| Mus musculus BAC clone RP24-131J20 from chromosome 17, complete
             sequence
          Length = 167872

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   attctcccttgacaaaacaa 140
             ||||||||||||||||||||
Sbjct: 25230 attctcccttgacaaaacaa 25249

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>dbj|AP003353.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1491A8
          Length = 159490

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gtgaatgtagattttcagga 79
             ||||||||||||||||||||
Sbjct: 27483 gtgaatgtagattttcagga 27464


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,910,469
Number of Sequences: 3902068
Number of extensions: 5910469
Number of successful extensions: 92521
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92225
Number of HSP's gapped (non-prelim): 296
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result