ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31b20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184187.2| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4dbj|AK121927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
5dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
6gb|BT018777.1| Zea mays clone EL01N0526B05.d mRNA sequence 48 0.026
7gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 42 1.6
8gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, c... 40 6.3
9gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, comp... 40 6.3
10gb|AC004768.1| Homo sapiens chromosome 5, PAC clone 228g9 (LBNL ... 40 6.3
11gb|AC159294.2| Mus musculus BAC clone RP23-287I15 from chromosom... 40 6.3
12emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chr... 40 6.3
13gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, comp... 40 6.3
14gb|AC154831.2| Mus musculus BAC clone RP24-556A11 from chromosom... 40 6.3
15dbj|AB019226.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.3
16emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 6.3
17emb|BX119961.9| Mouse DNA sequence from clone RP23-444M11 on chr... 40 6.3 
>ref|NM_184187.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2242

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 382  tgagctcccttgatggtgctgcggctggatgccggcttgtctacgtcgtatatgattgcg 441
            |||||||| || | |||| ||||||||||||| ||||||||||  || ||||  ||||| 
Sbjct: 1814 tgagctccttttacggtgatgcggctggatgctggcttgtctatttcatatacaattgca 1755

                                   
Query: 442  caggtgtccagcgagcccgtggc 464
            ||||||||||  ||||| |||||
Sbjct: 1754 caggtgtccaatgagcctgtggc 1732
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                           
Query: 382     tgagctcccttgatggtgctgcggctggatgccggcttgtctacgtcgtatatgattgcg 441
               |||||||| || | |||| ||||||||||||| ||||||||||  || ||||  ||||| 
Sbjct: 1417554 tgagctccttttacggtgatgcggctggatgctggcttgtctatttcatatacaattgca 1417495

                                      
Query: 442     caggtgtccagcgagcccgtggc 464
               ||||||||||  ||||| |||||
Sbjct: 1417494 caggtgtccaatgagcctgtggc 1417472
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>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0037C04
          Length = 137879

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                          
Query: 382    tgagctcccttgatggtgctgcggctggatgccggcttgtctacgtcgtatatgattgcg 441
              |||||||| || | |||| ||||||||||||| ||||||||||  || ||||  ||||| 
Sbjct: 115605 tgagctccttttacggtgatgcggctggatgctggcttgtctatttcatatacaattgca 115546

                                     
Query: 442    caggtgtccagcgagcccgtggc 464
              ||||||||||  ||||| |||||
Sbjct: 115545 caggtgtccaatgagcctgtggc 115523
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>dbj|AK121927.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106G21, full
            insert sequence
          Length = 2242

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 382  tgagctcccttgatggtgctgcggctggatgccggcttgtctacgtcgtatatgattgcg 441
            |||||||| || | |||| ||||||||||||| ||||||||||  || ||||  ||||| 
Sbjct: 1814 tgagctccttttacggtgatgcggctggatgctggcttgtctatttcatatacaattgca 1755

                                   
Query: 442  caggtgtccagcgagcccgtggc 464
            ||||||||||  ||||| |||||
Sbjct: 1754 caggtgtccaatgagcctgtggc 1732
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>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0044F08
          Length = 141528

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 382   tgagctcccttgatggtgctgcggctggatgccggcttgtctacgtcgtatatgattgcg 441
             |||||||| || | |||| ||||||||||||| ||||||||||  || ||||  ||||| 
Sbjct: 67175 tgagctccttttacggtgatgcggctggatgctggcttgtctatttcatatacaattgca 67116

                                    
Query: 442   caggtgtccagcgagcccgtggc 464
             ||||||||||  ||||| |||||
Sbjct: 67115 caggtgtccaatgagcctgtggc 67093
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>gb|BT018777.1| Zea mays clone EL01N0526B05.d mRNA sequence
          Length = 2173

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                        
Query: 385  gctcccttgatggtgctgcggctggatgccggcttgtctacgtcgtatatgattgcgcag 444
            |||||||||||||||  ||| |||| | ||||||||||||  ||||| |  ||||| |||
Sbjct: 1750 gctcccttgatggtgacgcgactggctaccggcttgtctatctcgtagacaattgcacag 1691

                                
Query: 445  gtgtccagcgagcccgtggc 464
            ||||| || ||||| |||||
Sbjct: 1690 gtgtcaagtgagccagtggc 1671
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 335     ccagggtgtcgttgtcggtgaagganatcccg 366
               |||||||||||| |||||||||| | ||||||
Sbjct: 2631083 ccagggtgtcgtcgtcggtgaagcacatcccg 2631114
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>gb|AC164597.11| Mus musculus chromosome 15, clone RP23-108H23, complete sequence
          Length = 190235

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     acaaaatgtcacaacacacc 41
              ||||||||||||||||||||
Sbjct: 129280 acaaaatgtcacaacacacc 129261
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>gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, complete sequence
          Length = 195609

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    attctcagcatctcacaaaa 73
             ||||||||||||||||||||
Sbjct: 95026 attctcagcatctcacaaaa 95007
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>gb|AC004768.1| Homo sapiens chromosome 5, PAC clone 228g9 (LBNL H142), complete
            sequence
          Length = 148400

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   cagcatctcacaaaaccaga 78
            ||||||||||||||||||||
Sbjct: 2633 cagcatctcacaaaaccaga 2614
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>gb|AC159294.2| Mus musculus BAC clone RP23-287I15 from chromosome 12, complete sequence
          Length = 226841

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ttctcagcatctcacaaaac 74
              ||||||||||||||||||||
Sbjct: 213610 ttctcagcatctcacaaaac 213591
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>emb|AL157818.12| Human DNA sequence from clone RP11-464I2 on chromosome 13q32.1-32.3
              Contains part of the ABCC4 gene for ATP-binding cassette,
              sub-family C (CFTR/MRP), member 4, complete sequence
          Length = 182485

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     ggaaaacaaaatgtcacaac 36
              ||||||||||||||||||||
Sbjct: 110704 ggaaaacaaaatgtcacaac 110723
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>gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, complete sequence
          Length = 172930

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     cagcatctcacaaaaccaga 78
              ||||||||||||||||||||
Sbjct: 131340 cagcatctcacaaaaccaga 131321
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>gb|AC154831.2| Mus musculus BAC clone RP24-556A11 from chromosome 12, complete
             sequence
          Length = 199712

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttctcagcatctcacaaaac 74
             ||||||||||||||||||||
Sbjct: 21405 ttctcagcatctcacaaaac 21386
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>dbj|AB019226.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24M7
          Length = 73999

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aaaacaaaatgtcacaacac 38
             ||||||||||||||||||||
Sbjct: 30403 aaaacaaaatgtcacaacac 30422
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    atggtgctgcggctggatgc 413
              ||||||||||||||||||||
Sbjct: 340685 atggtgctgcggctggatgc 340704
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>emb|BX119961.9| Mouse DNA sequence from clone RP23-444M11 on chromosome X, complete
             sequence
          Length = 76072

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    ttctcagcatctcacaaaac 74
             ||||||||||||||||||||
Sbjct: 13218 ttctcagcatctcacaaaac 13199


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,892,527
Number of Sequences: 3902068
Number of extensions: 2892527
Number of successful extensions: 51743
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51653
Number of HSP's gapped (non-prelim): 90
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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