| Clone Name | rbags30m09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476705.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1857 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 198 actaccgcttgcacttggctttcgccatt 226 |||||||||||||||||||||| |||||| Sbjct: 1681 actaccgcttgcacttggcttttgccatt 1653 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Minus Query: 314 cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373 |||||||||||||||||||| || |||| ||| ||| ||||| |||||||||||| Sbjct: 1565 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 1506 Query: 374 tcagaactag 383 || ||||||| Sbjct: 1505 tcggaactag 1496
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 198 actaccgcttgcacttggctttcgccatt 226 |||||||||||||||||||||| |||||| Sbjct: 3361912 actaccgcttgcacttggcttttgccatt 3361884 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Minus Query: 314 cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373 |||||||||||||||||||| || |||| ||| ||| ||||| |||||||||||| Sbjct: 3361796 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 3361737 Query: 374 tcagaactag 383 || ||||||| Sbjct: 3361736 tcggaactag 3361727
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 198 actaccgcttgcacttggctttcgccatt 226 |||||||||||||||||||||| |||||| Sbjct: 1732 actaccgcttgcacttggcttttgccatt 1704 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Minus Query: 314 cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373 |||||||||||||||||||| || |||| ||| ||| ||||| |||||||||||| Sbjct: 1616 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 1557 Query: 374 tcagaactag 383 || ||||||| Sbjct: 1556 tcggaactag 1547
>dbj|AK066456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061L22, full insert sequence Length = 1859 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 198 actaccgcttgcacttggctttcgccatt 226 |||||||||||||||||||||| |||||| Sbjct: 1683 actaccgcttgcacttggcttttgccatt 1655 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Minus Query: 314 cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373 |||||||||||||||||||| || |||| ||| ||| ||||| |||||||||||| Sbjct: 1567 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 1508 Query: 374 tcagaactag 383 || ||||||| Sbjct: 1507 tcggaactag 1498
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 198 actaccgcttgcacttggctttcgccatt 226 |||||||||||||||||||||| |||||| Sbjct: 171605 actaccgcttgcacttggcttttgccatt 171577 Score = 44.1 bits (22), Expect = 0.43 Identities = 58/70 (82%) Strand = Plus / Minus Query: 314 cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373 |||||||||||||||||||| || |||| ||| ||| ||||| |||||||||||| Sbjct: 171489 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 171430 Query: 374 tcagaactag 383 || ||||||| Sbjct: 171429 tcggaactag 171420
>gb|AY105882.1| Zea mays PCO080679 mRNA sequence Length = 679 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 314 cgagcagccttcctttcctcgggcccca 341 ||||||||||||||||||||||| |||| Sbjct: 395 cgagcagccttcctttcctcgggtccca 368 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 352 ctcgtgccacgaaccgtcttcatcagaact 381 ||||||||||||| | |||||||||||||| Sbjct: 354 ctcgtgccacgaatcatcttcatcagaact 325
>emb|AL391686.10| Human DNA sequence from clone CTB-BR164I22 on chromosome 10, complete sequence Length = 59938 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 408 catcttcctcattgttctccaa 429 |||||||||||||||||||||| Sbjct: 19904 catcttcctcattgttctccaa 19883
>gb|AC126929.3| Mus musculus BAC clone RP24-465A20 from chromosome 17, complete sequence Length = 168712 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 actgactggaactagatttgt 146 ||||||||||||||||||||| Sbjct: 76997 actgactggaactagatttgt 77017
>dbj|D28749.1|DRODEC Fruitfly mRNA for DE-cadherin, complete cds Length = 5414 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 catctccattggagacaagactgac 131 |||||||||||||||||||| |||| Sbjct: 2213 catctccattggagacaagaatgac 2237
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 426 ccaaggagcacttggttttg 445 |||||||||||||||||||| Sbjct: 579142 ccaaggagcacttggttttg 579161
>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence Length = 172393 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 catctccattggagacaaga 126 |||||||||||||||||||| Sbjct: 123209 catctccattggagacaaga 123228
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 catgtggattgccaaccagc 189 |||||||||||||||||||| Sbjct: 5267469 catgtggattgccaaccagc 5267450
>emb|BX950853.16| Zebrafish DNA sequence from clone DKEY-25L21 in linkage group 17, complete sequence Length = 214513 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 agatttgtataacaaaattg 158 |||||||||||||||||||| Sbjct: 47731 agatttgtataacaaaattg 47750
>ref|XM_786978.1| PREDICTED: Strongylocentrotus purpuratus similar to Lactase-phlorizin hydrolase precursor (Lactase-glycosylceramidase) (LOC587236), mRNA Length = 663 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 caaaattgatggtgtcaacc 170 |||||||||||||||||||| Sbjct: 447 caaaattgatggtgtcaacc 466
>emb|CR385021.12| Zebrafish DNA sequence from clone CH211-200N15 in linkage group 16, complete sequence Length = 148046 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 atttgtataacaaaattgat 160 |||||||||||||||||||| Sbjct: 120562 atttgtataacaaaattgat 120543
>emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on chromosome 4 Contains a 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor (Hibadh) pseudogene and a CpG island, complete sequence Length = 157883 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cttgcacttggctttcgcca 224 |||||||||||||||||||| Sbjct: 83466 cttgcacttggctttcgcca 83447
>emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in linkage group 7, complete sequence Length = 105480 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ggttttgcaggtccaagggttctt 462 |||||||||||||||| ||||||| Sbjct: 74239 ggttttgcaggtccaatggttctt 74216
>ref|NM_057374.2| Drosophila melanogaster shotgun CG3722-RA (shg), mRNA Length = 5414 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 catctccattggagacaaga 126 |||||||||||||||||||| Sbjct: 2213 catctccattggagacaaga 2232
>gb|AC026469.8| Homo sapiens chromosome 16 clone RP11-442O1, complete sequence Length = 199669 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 tcattgttctccaaggagca 435 |||||||||||||||||||| Sbjct: 180905 tcattgttctccaaggagca 180886
>gb|AC092341.5| Homo sapiens chromosome 16 clone RP11-260K13, complete sequence Length = 180623 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 tcattgttctccaaggagca 435 |||||||||||||||||||| Sbjct: 54583 tcattgttctccaaggagca 54564
>emb|BX927095.15| Zebrafish DNA sequence from clone CH211-202E13 in linkage group 17, complete sequence Length = 211277 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tggaactagatttgtataac 151 |||||||||||||||||||| Sbjct: 20516 tggaactagatttgtataac 20535
>emb|AL132987.4|CNS01DTV Human chromosome 14 DNA sequence BAC R-188I13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 169505 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 tgcaggtccaagggttcttccagt 467 ||||| |||||||||||||||||| Sbjct: 127638 tgcagctccaagggttcttccagt 127661
>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete sequence Length = 303438 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 catctccattggagacaaga 126 |||||||||||||||||||| Sbjct: 268930 catctccattggagacaaga 268911
>dbj|AP002383.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-60C6, complete sequence Length = 170142 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 128 tgactggaactagatttgtataacaaaattga 159 |||||||||||| ||||||||| |||||||| Sbjct: 113432 tgactggaactacgtttgtataagaaaattga 113463
>gb|AC005268.1|AC005268 Drosophila melanogaster DNA sequence (P1s DS03550 (D225) and DS02397 (D206)), complete sequence Length = 89791 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 catctccattggagacaaga 126 |||||||||||||||||||| Sbjct: 10798 catctccattggagacaaga 10817 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,224,113 Number of Sequences: 3902068 Number of extensions: 3224113 Number of successful extensions: 57460 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57389 Number of HSP's gapped (non-prelim): 71 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)