ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30m09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476705.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
3dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
4dbj|AK066456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
5dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
6gb|AY105882.1| Zea mays PCO080679 mRNA sequence 48 0.027
7emb|AL391686.10| Human DNA sequence from clone CTB-BR164I22 on c... 44 0.43
8gb|AC126929.3| Mus musculus BAC clone RP24-465A20 from chromosom... 42 1.7
9dbj|D28749.1|DRODEC Fruitfly mRNA for DE-cadherin, complete cds 42 1.7
10gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 6.7
11gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete... 40 6.7
12gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 6.7
13emb|BX950853.16| Zebrafish DNA sequence from clone DKEY-25L21 in... 40 6.7
14ref|XM_786978.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.7
15emb|CR385021.12| Zebrafish DNA sequence from clone CH211-200N15 ... 40 6.7
16emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on ch... 40 6.7
17emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in ... 40 6.7
18ref|NM_057374.2| Drosophila melanogaster shotgun CG3722-RA (shg)... 40 6.7
19gb|AC026469.8| Homo sapiens chromosome 16 clone RP11-442O1, comp... 40 6.7
20gb|AC092341.5| Homo sapiens chromosome 16 clone RP11-260K13, com... 40 6.7
21emb|BX927095.15| Zebrafish DNA sequence from clone CH211-202E13 ... 40 6.7
22emb|AL132987.4|CNS01DTV Human chromosome 14 DNA sequence BAC R-1... 40 6.7
23gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60... 40 6.7
24dbj|AP002383.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.7
25gb|AC005268.1|AC005268 Drosophila melanogaster DNA sequence (P1s... 40 6.7

>ref|XM_476705.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1857

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 198  actaccgcttgcacttggctttcgccatt 226
            |||||||||||||||||||||| ||||||
Sbjct: 1681 actaccgcttgcacttggcttttgccatt 1653



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 314  cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373
            |||||||||||||||||||| || |||| |||      ||| ||||| ||||||||||||
Sbjct: 1565 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 1506

                      
Query: 374  tcagaactag 383
            || |||||||
Sbjct: 1505 tcggaactag 1496



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 198     actaccgcttgcacttggctttcgccatt 226
               |||||||||||||||||||||| ||||||
Sbjct: 3361912 actaccgcttgcacttggcttttgccatt 3361884



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                           
Query: 314     cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373
               |||||||||||||||||||| || |||| |||      ||| ||||| ||||||||||||
Sbjct: 3361796 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 3361737

                         
Query: 374     tcagaactag 383
               || |||||||
Sbjct: 3361736 tcggaactag 3361727



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>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0428D12
          Length = 141678

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 198  actaccgcttgcacttggctttcgccatt 226
            |||||||||||||||||||||| ||||||
Sbjct: 1732 actaccgcttgcacttggcttttgccatt 1704



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 314  cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373
            |||||||||||||||||||| || |||| |||      ||| ||||| ||||||||||||
Sbjct: 1616 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 1557

                      
Query: 374  tcagaactag 383
            || |||||||
Sbjct: 1556 tcggaactag 1547



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>dbj|AK066456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061L22, full
            insert sequence
          Length = 1859

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 198  actaccgcttgcacttggctttcgccatt 226
            |||||||||||||||||||||| ||||||
Sbjct: 1683 actaccgcttgcacttggcttttgccatt 1655



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 314  cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373
            |||||||||||||||||||| || |||| |||      ||| ||||| ||||||||||||
Sbjct: 1567 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 1508

                      
Query: 374  tcagaactag 383
            || |||||||
Sbjct: 1507 tcggaactag 1498



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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 198    actaccgcttgcacttggctttcgccatt 226
              |||||||||||||||||||||| ||||||
Sbjct: 171605 actaccgcttgcacttggcttttgccatt 171577



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                          
Query: 314    cgagcagccttcctttcctcgggccccaactttgtggactcgtgccacgaaccgtcttca 373
              |||||||||||||||||||| || |||| |||      ||| ||||| ||||||||||||
Sbjct: 171489 cgagcagccttcctttcctcaggtcccaccttcaaaatctcatgccatgaaccgtcttca 171430

                        
Query: 374    tcagaactag 383
              || |||||||
Sbjct: 171429 tcggaactag 171420



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>gb|AY105882.1| Zea mays PCO080679 mRNA sequence
          Length = 679

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 314 cgagcagccttcctttcctcgggcccca 341
           ||||||||||||||||||||||| ||||
Sbjct: 395 cgagcagccttcctttcctcgggtccca 368



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 352 ctcgtgccacgaaccgtcttcatcagaact 381
           ||||||||||||| | ||||||||||||||
Sbjct: 354 ctcgtgccacgaatcatcttcatcagaact 325



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>emb|AL391686.10| Human DNA sequence from clone CTB-BR164I22 on chromosome 10, complete
             sequence
          Length = 59938

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 408   catcttcctcattgttctccaa 429
             ||||||||||||||||||||||
Sbjct: 19904 catcttcctcattgttctccaa 19883



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>gb|AC126929.3| Mus musculus BAC clone RP24-465A20 from chromosome 17, complete
             sequence
          Length = 168712

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   actgactggaactagatttgt 146
             |||||||||||||||||||||
Sbjct: 76997 actgactggaactagatttgt 77017



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>dbj|D28749.1|DRODEC Fruitfly mRNA for DE-cadherin, complete cds
          Length = 5414

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 107  catctccattggagacaagactgac 131
            |||||||||||||||||||| ||||
Sbjct: 2213 catctccattggagacaagaatgac 2237



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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    ccaaggagcacttggttttg 445
              ||||||||||||||||||||
Sbjct: 579142 ccaaggagcacttggttttg 579161



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>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence
          Length = 172393

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    catctccattggagacaaga 126
              ||||||||||||||||||||
Sbjct: 123209 catctccattggagacaaga 123228



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     catgtggattgccaaccagc 189
               ||||||||||||||||||||
Sbjct: 5267469 catgtggattgccaaccagc 5267450



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>emb|BX950853.16| Zebrafish DNA sequence from clone DKEY-25L21 in linkage group 17,
             complete sequence
          Length = 214513

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   agatttgtataacaaaattg 158
             ||||||||||||||||||||
Sbjct: 47731 agatttgtataacaaaattg 47750



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>ref|XM_786978.1| PREDICTED: Strongylocentrotus purpuratus similar to
           Lactase-phlorizin hydrolase precursor
           (Lactase-glycosylceramidase) (LOC587236), mRNA
          Length = 663

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 caaaattgatggtgtcaacc 170
           ||||||||||||||||||||
Sbjct: 447 caaaattgatggtgtcaacc 466



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>emb|CR385021.12| Zebrafish DNA sequence from clone CH211-200N15 in linkage group 16,
              complete sequence
          Length = 148046

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    atttgtataacaaaattgat 160
              ||||||||||||||||||||
Sbjct: 120562 atttgtataacaaaattgat 120543



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>emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on chromosome 4 Contains a
             3-hydroxyisobutyrate dehydrogenase, mitochondrial
             precursor (Hibadh) pseudogene and a CpG island, complete
             sequence
          Length = 157883

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   cttgcacttggctttcgcca 224
             ||||||||||||||||||||
Sbjct: 83466 cttgcacttggctttcgcca 83447



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>emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in linkage group 7,
             complete sequence
          Length = 105480

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 439   ggttttgcaggtccaagggttctt 462
             |||||||||||||||| |||||||
Sbjct: 74239 ggttttgcaggtccaatggttctt 74216



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>ref|NM_057374.2| Drosophila melanogaster shotgun CG3722-RA (shg), mRNA
          Length = 5414

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  catctccattggagacaaga 126
            ||||||||||||||||||||
Sbjct: 2213 catctccattggagacaaga 2232



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>gb|AC026469.8| Homo sapiens chromosome 16 clone RP11-442O1, complete sequence
          Length = 199669

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    tcattgttctccaaggagca 435
              ||||||||||||||||||||
Sbjct: 180905 tcattgttctccaaggagca 180886



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>gb|AC092341.5| Homo sapiens chromosome 16 clone RP11-260K13, complete sequence
          Length = 180623

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   tcattgttctccaaggagca 435
             ||||||||||||||||||||
Sbjct: 54583 tcattgttctccaaggagca 54564



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>emb|BX927095.15| Zebrafish DNA sequence from clone CH211-202E13 in linkage group 17,
             complete sequence
          Length = 211277

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   tggaactagatttgtataac 151
             ||||||||||||||||||||
Sbjct: 20516 tggaactagatttgtataac 20535



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>emb|AL132987.4|CNS01DTV Human chromosome 14 DNA sequence BAC R-188I13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169505

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 444    tgcaggtccaagggttcttccagt 467
              ||||| ||||||||||||||||||
Sbjct: 127638 tgcagctccaagggttcttccagt 127661



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>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete
              sequence
          Length = 303438

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    catctccattggagacaaga 126
              ||||||||||||||||||||
Sbjct: 268930 catctccattggagacaaga 268911



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>dbj|AP002383.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-60C6, complete
              sequence
          Length = 170142

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 128    tgactggaactagatttgtataacaaaattga 159
              ||||||||||||  ||||||||| ||||||||
Sbjct: 113432 tgactggaactacgtttgtataagaaaattga 113463



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>gb|AC005268.1|AC005268 Drosophila melanogaster DNA sequence (P1s DS03550 (D225) and DS02397
             (D206)), complete sequence
          Length = 89791

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   catctccattggagacaaga 126
             ||||||||||||||||||||
Sbjct: 10798 catctccattggagacaaga 10817


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,224,113
Number of Sequences: 3902068
Number of extensions: 3224113
Number of successful extensions: 57460
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57389
Number of HSP's gapped (non-prelim): 71
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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