ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1l13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 232 2e-58
2emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 232 2e-58
3gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 224 6e-56
4emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 216 1e-53
5emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 206 1e-50
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 107 1e-20
7dbj|AP001930.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 46 0.031
8ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family,... 44 0.12
9gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.12
10gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.12
11dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 44 0.12
12dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.12
13dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 44 0.12
14dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.12
15emb|AL354824.8| Human DNA sequence from clone RP11-416N4 on chro... 42 0.48
16emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 42 0.48
17gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 1.9
18ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 1.9
19gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Ca... 40 1.9
20gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 1.9
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
22gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cance... 40 1.9
23dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
24ref|XM_310475.2| Anopheles gambiae str. PEST ENSANGP00000019220 ... 40 1.9
25gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 40 1.9
26emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chro... 40 1.9
27gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome... 38 7.5
28gb|AC165351.2| Mus musculus BAC clone RP23-197K16 from chromosom... 38 7.5
29gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome ... 38 7.5
30gb|AC138382.10| Mus musculus chromosome 1, clone RP24-400E14, co... 38 7.5
31gb|AC123654.9| Mus musculus chromosome 15, clone RP23-161D16, co... 38 7.5
32gb|AC124226.12| Mus musculus chromosome 15, clone RP23-94G21, co... 38 7.5
33gb|U29377.1| Caenorhabditis elegans cosmid K05F1, complete sequence 38 7.5
34gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome... 38 7.5
35gb|AC124196.4| Mus musculus BAC clone RP23-296L12 from chromosom... 38 7.5
36gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp... 38 7.5
37gb|AC148487.14| Medicago truncatula clone mth2-57f20, complete s... 38 7.5
38emb|CR547125.8| Zebrafish DNA sequence from clone DKEY-27B6 in l... 38 7.5
39emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on... 38 7.5
40emb|BX005132.9| Human DNA sequence from clone RP4-603B14 on chro... 38 7.5
41emb|AL451074.13| Human DNA sequence from clone RP11-466F5 on chr... 38 7.5
42emb|AL357564.17| Human DNA sequence from clone RP1-43E13 on chro... 38 7.5
43emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on ch... 38 7.5
44emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chrom... 38 7.5
45emb|BX072572.8| Zebrafish DNA sequence from clone CH211-119A17, ... 38 7.5
46emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 38 7.5
47gb|AC157275.2| Mus musculus BAC clone RP24-164M6 from chromosome... 38 7.5
48gb|AC166092.4| Glycine max clone gmw1-93l19, complete sequence 38 7.5
49gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence 38 7.5
50gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, comp... 38 7.5
51gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, comp... 38 7.5
52gb|AC000067.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 100h... 38 7.5
53gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cance... 38 7.5
54dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
55gb|AC093736.3| Homo sapiens BAC clone RP11-18K13 from 4, complet... 38 7.5
56gb|AC012038.19|AC012038 Homo sapiens 12 BAC RP11-547C5 (Roswell ... 38 7.5
57gb|AC084463.1|AC084463 Caenorhabditis briggsae cosmid CB037F21, ... 38 7.5
58dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
59dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.5
60emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 38 7.5
61emb|AL929507.37| Zebrafish DNA sequence from clone DKEY-7C18 in ... 38 7.5
62dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.5
63gb|AY656839.1| Leishmania donovani chagasi genomic sequence 38 7.5
64gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.5
65emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 38 7.5
66gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, comple... 38 7.5
67gb|AC140321.3| Mus musculus BAC clone RP23-402K6 from 1, complet... 38 7.5
68emb|AL831712.12| Mouse DNA sequence from clone RP23-118A20 on ch... 38 7.5
69emb|Z75711.1|CEK02B12 Caenorhabditis elegans Cosmid K02B12, comp... 38 7.5
70dbj|AP006642.1| Lotus japonicus genomic DNA, chromosome 3, clone... 38 7.5
71gb|AC171727.1| Lycopersicon esculentum chromosome 01 clone C01HB... 38 7.5
72dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, dele... 38 7.5 
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  232 bits (117), Expect = 2e-58
 Identities = 147/156 (94%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagccatgttggtacatgaacatggccatacacatattcttaggaacaaataagaaagta 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 638 gagccatgttggtacatgaacatggacatacacatattcttaggaacaaataagaaag-a 580

                                                                       
Query: 61  taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggnacttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 579 taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttta 520

                                               
Query: 121 tatgtggcccatcgtcagtgagctgttcatgccttg 156
           ||| |||||  |||| ||||||||||| | ||||||
Sbjct: 519 tatatggcctgtcgtgagtgagctgtttaggccttg 484
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>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  232 bits (117), Expect = 2e-58
 Identities = 147/156 (94%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagccatgttggtacatgaacatggccatacacatattcttaggaacaaataagaaagta 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 759 gagccatgttggtacatgaacatggacatacacatattcttaggaacaaataagaaag-a 701

                                                                       
Query: 61  taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggnacttta 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 700 taaatggacaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttta 641

                                               
Query: 121 tatgtggcccatcgtcagtgagctgttcatgccttg 156
           |||| ||||| | || ||||||||||| ||||||||
Sbjct: 640 tatgcggcccgtggtgagtgagctgtttatgccttg 605
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>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  224 bits (113), Expect = 6e-56
 Identities = 146/156 (93%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagccatgttggtacatgaacatggccatacacatattcttaggaacaaataagaaagta 60
           |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 212 gagccatgttcgtacatgaacatggacatacacatattcttaggaacaaataagaaag-a 154

                                                                       
Query: 61  taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggnacttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 153 taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttta 94

                                               
Query: 121 tatgtggcccatcgtcagtgagctgttcatgccttg 156
           ||| |||||  |||| ||||||||||| | ||||||
Sbjct: 93  tatatggcctgtcgtgagtgagctgtttaggccttg 58
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  216 bits (109), Expect = 1e-53
 Identities = 145/156 (92%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagccatgttggtacatgaacatggccatacacatattcttaggaacaaataagaaagta 60
           ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 487 gagccatgttgttacatgaacatggacatacacatattcttaggaacaagtaagaaag-a 429

                                                                       
Query: 61  taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggnacttta 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 428 caaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttta 369

                                               
Query: 121 tatgtggcccatcgtcagtgagctgttcatgccttg 156
           |||||||||| | || ||||||||||| | ||||||
Sbjct: 368 tatgtggcccgtggtgagtgagctgtttaggccttg 333
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>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  206 bits (104), Expect = 1e-50
 Identities = 116/119 (97%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagccatgttggtacatgaacatggccatacacatattcttaggaacaaataagaaagta 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 719 gagccatgttggtacatgaacatggacatacacatattcttaggaacaaataagaaag-a 661

                                                                      
Query: 61  taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggnacttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 660 taaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 602
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  107 bits (54), Expect = 1e-20
 Identities = 136/152 (89%), Gaps = 10/152 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   catgttggtacatgaacatggccatacacatattcttaggaacaaataagaaagtataaa 64
           |||||||||||||||||||||   |||||| ||| |||||||||| |||||||| |||| 
Sbjct: 680 catgttggtacatgaacatgggactacacacatt-ttaggaacaa-taagaaag-ataa- 625

                                                                       
Query: 65  tggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggnactttatatg 124
           |||||||||||||||  ||||| |||||||||||||||| ||||||||| |||| |||||
Sbjct: 624 tggagaaggaaaacc--aagca-tgtcagagttgacaaa-ctgcaatggcactt-atatg 570

                                           
Query: 125 tggcccatcgtcagtgagctgttcatgccttg 156
           || |||||||||||||||||||| ||||||||
Sbjct: 569 tg-cccatcgtcagtgagctgtttatgccttg 539
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>dbj|AP001930.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-669L23, complete
             sequences
          Length = 167117

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 13    tacatgaacatggccatacacatattc 39
             ||||||| |||||||||||||||||||
Sbjct: 96316 tacatgatcatggccatacacatattc 96342
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>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2
           (Ugt3a2), mRNA
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 74  aaaacccaaagcaatgtcagagttgacaaa 103
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37820
           IMAGE:5098754), complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 74  aaaacccaaagcaatgtcagagttgacaaa 103
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37957
           IMAGE:5134131), complete cds
          Length = 2192

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 74  aaaacccaaagcaatgtcagagttgacaaa 103
           |||| ||||||||| |||||||||||||||
Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
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>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430112M20 product:Hypothetical protein
           (Hypothetical UDP-glucoronosyl and UDP-glucosyl
           transferase containing protein), full insert sequence
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 74  aaaacccaaagcaatgtcagagttgacaaa 103
           |||| ||||||||| |||||||||||||||
Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
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>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA
           PROTEIN [Mus musculus]; weakly similar to
           UDP-Glycosyltransferase/glycogen phosphorylase, full
           insert sequence
          Length = 1723

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 74  aaaacccaaagcaatgtcagagttgacaaa 103
           |||| ||||||||| |||||||||||||||
Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
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>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730018P11 product:hypothetical
           UDP-glucoronosyl and UDP-glucosyl transferase containing
           protein, full insert sequence
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 74  aaaacccaaagcaatgtcagagttgacaaa 103
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
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>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530069C13 product:hypothetical
           UDP-Glycosyltransferase/glycogen phosphorylase structure
           containing protein, full insert sequence
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 74  aaaacccaaagcaatgtcagagttgacaaa 103
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
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>emb|AL354824.8| Human DNA sequence from clone RP11-416N4 on chromosome 20 Contains two
             novel genes, part of a novel gene, the 5' end of the
             SNAP25 gene for 25 kD synaptosomal-associated protein and
             3 CpG islands, complete sequence
          Length = 83951

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    aataagaaagtataaatggag 69
             |||||||||||||||||||||
Sbjct: 41025 aataagaaagtataaatggag 41045
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>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
              ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, the 3' end of
              the ZNF11B gene for zinc finger protein 11b (KOX 2), a
              novel gene (FLJ23327) and two CpG Islands, complete
              sequence
          Length = 146328

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 83     agcaatgtcagagttgacaaa 103
              |||||||||||||||||||||
Sbjct: 137861 agcaatgtcagagttgacaaa 137841
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 75      aaacccaaagcaatgtcaga 94
               ||||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
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>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
          (CNI04270) partial mRNA
          Length = 3071

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 75 aaacccaaagcaatgtcaga 94
          ||||||||||||||||||||
Sbjct: 80 aaacccaaagcaatgtcaga 99
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>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 151302

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 30   acacatattcttaggaacaaataagaaa 57
            |||||||||||||| |||||| ||||||
Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
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>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    atgaacatggccatacacatattc 39
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 68      agaaggaaaacccaaagcaa 87
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854



 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 19       aacatggccatacacatattctt 41
                ||||||||| |||||||||||||
Sbjct: 28520251 aacatggccgtacacatattctt 28520229
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>gb|AC015542.17| Homo sapiens 3 BAC RP11-38B6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 155150

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    ggaacaaataagaaagtata 62
             ||||||||||||||||||||
Sbjct: 55154 ggaacaaataagaaagtata 55135
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    agaaggaaaacccaaagcaa 87
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
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>ref|XM_310475.2| Anopheles gambiae str. PEST ENSANGP00000019220
           (ENSANGG00000016731), mRNA
          Length = 720

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 131 atcgtcagtgagctgttcat 150
           ||||||||||||||||||||
Sbjct: 70  atcgtcagtgagctgttcat 51
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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 56      aagtataaatggagaaggaaaacc 79
               |||||||||||||||| |||||||
Sbjct: 1689967 aagtataaatggagaaagaaaacc 1689990
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>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete
              sequence
          Length = 216239

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     tataaatggagaaggaaaac 78
              ||||||||||||||||||||
Sbjct: 188890 tataaatggagaaggaaaac 188871
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>gb|AC129022.5| Mus musculus BAC clone RP23-318P2 from chromosome 12, complete sequence
          Length = 206083

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 75    aaacccaaagcaatgtcag 93
             |||||||||||||||||||
Sbjct: 42496 aaacccaaagcaatgtcag 42478
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>gb|AC165351.2| Mus musculus BAC clone RP23-197K16 from chromosome 12, complete sequence
          Length = 211170

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 45     aacaaataagaaagtataaatggagaa 71
              |||||||  ||||||||||||||||||
Sbjct: 155653 aacaaatgtgaaagtataaatggagaa 155627
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>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete sequence
          Length = 209896

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     atacacatattcttaggaa 46
              |||||||||||||||||||
Sbjct: 165649 atacacatattcttaggaa 165667
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>gb|AC138382.10| Mus musculus chromosome 1, clone RP24-400E14, complete sequence
          Length = 136819

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 35    tattcttaggaacaaataagaaa 57
             |||| ||||||||||||||||||
Sbjct: 69693 tatttttaggaacaaataagaaa 69671
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>gb|AC123654.9| Mus musculus chromosome 15, clone RP23-161D16, complete sequence
          Length = 182376

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 38    tcttaggaacaaataagaaagta 60
             ||||||||||||| |||||||||
Sbjct: 11987 tcttaggaacaaagaagaaagta 12009
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>gb|AC124226.12| Mus musculus chromosome 15, clone RP23-94G21, complete sequence
          Length = 189787

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 38     tcttaggaacaaataagaaagta 60
              ||||||||||||| |||||||||
Sbjct: 152393 tcttaggaacaaagaagaaagta 152415
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>gb|U29377.1| Caenorhabditis elegans cosmid K05F1, complete sequence
          Length = 26275

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 48   aaataagaaagtataaatg 66
            |||||||||||||||||||
Sbjct: 5106 aaataagaaagtataaatg 5088
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>gb|AC124499.3| Mus musculus BAC clone RP24-68G23 from chromosome 12, complete sequence
          Length = 209276

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 45    aacaaataagaaagtataaatggagaa 71
             |||||||  ||||||||||||||||||
Sbjct: 16477 aacaaatgtgaaagtataaatggagaa 16503
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>gb|AC124196.4| Mus musculus BAC clone RP23-296L12 from chromosome 13, complete sequence
          Length = 193553

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     ataaatggagaaggaaaac 78
              |||||||||||||||||||
Sbjct: 109333 ataaatggagaaggaaaac 109351
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>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 36     attcttaggaacaaataagaaag 58
              ||||||||||||||| |||||||
Sbjct: 131901 attcttaggaacaaaaaagaaag 131879
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>gb|AC148487.14| Medicago truncatula clone mth2-57f20, complete sequence
          Length = 119671

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 45    aacaaataagaaagtataaatggagaa 71
             ||||||||| |||| ||||||||||||
Sbjct: 92807 aacaaataaaaaagaataaatggagaa 92781
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>emb|CR547125.8| Zebrafish DNA sequence from clone DKEY-27B6 in linkage group 7,
             complete sequence
          Length = 181421

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    caaataagaaagtataaat 65
             |||||||||||||||||||
Sbjct: 14611 caaataagaaagtataaat 14593
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>emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on chromosome 22q12, complete
             sequence
          Length = 212753

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    gaacaaataagaaagtata 62
             |||||||||||||||||||
Sbjct: 84452 gaacaaataagaaagtata 84434
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>emb|BX005132.9| Human DNA sequence from clone RP4-603B14 on chromosome 1, complete
             sequence
          Length = 51253

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    caaagcaatgtcagagttg 98
             |||||||||||||||||||
Sbjct: 42694 caaagcaatgtcagagttg 42676
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>emb|AL451074.13| Human DNA sequence from clone RP11-466F5 on chromosome 1 Contains the 3'
              end of the MGST3 gene for microsomal glutathione
              S-transferase 3, the ALDH9A1 gene for aldehyde
              dehydrogenase 9 family (member A1), a ribosomal protein S13
              (RPS13) pseudogene, a ribosomal protein L21 (RPL21)
              pseudogene, two novel genes (FLJ42974), a carbonic
              anhydrase XIV (CA14) pseudogene, the gene for putative
              membrane protein (LOC54499), a ribosomal protein L26
              (RPL26) pseudogene, the 5' end of (tbc), the 5' end of the
              UMPK gene for uridine monophosphate kinase and two CpG
              islands, complete sequence
          Length = 188217

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     aatgtcagagttgacaaaa 104
              |||||||||||||||||||
Sbjct: 115566 aatgtcagagttgacaaaa 115584
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>emb|AL357564.17| Human DNA sequence from clone RP1-43E13 on chromosome 1 Contains the 5'
             end of the gene for retinoblastoma-associated factor. 600
             (RBAF600) and the 3' end of a novel gene, complete
             sequence
          Length = 63684

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    aacaaataagaaagtataa 63
             |||||||||||||||||||
Sbjct: 49862 aacaaataagaaagtataa 49844
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>emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on chromosome 10 Contains the
             LIPF gene for gastric lipase, the genes for two novel
             ab-hydrolase associated lipase region domain containing
             proteins and a CHC1L (chromosome condensation 1-like
             RCC1-like G exchanging factor RLG) pseudogene, complete
             sequence
          Length = 161826

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    tcttaggaacaaataagaa 56
             |||||||||||||||||||
Sbjct: 48615 tcttaggaacaaataagaa 48597
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>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of
             the DAB1 gene for disabled homolog 1 (Drosophila),
             complete sequence
          Length = 134011

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 91    cagagttgacaaaactgcaatgg 113
             |||||||||||||||| ||||||
Sbjct: 88758 cagagttgacaaaactacaatgg 88736
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>emb|BX072572.8| Zebrafish DNA sequence from clone CH211-119A17, complete sequence
          Length = 173988

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    agaaagtataaatggagaa 71
             |||||||||||||||||||
Sbjct: 85556 agaaagtataaatggagaa 85538
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>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 12     gtacatgaacatggccatacaca 34
              |||||||||||||| ||||||||
Sbjct: 152158 gtacatgaacatggacatacaca 152136
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>gb|AC157275.2| Mus musculus BAC clone RP24-164M6 from chromosome 12, complete sequence
          Length = 175123

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 70    aaggaaaacccaaagcaatgtca 92
             |||||||||||||||||| ||||
Sbjct: 99058 aaggaaaacccaaagcaaagtca 99036
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>gb|AC166092.4| Glycine max clone gmw1-93l19, complete sequence
          Length = 51037

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 49    aataagaaagtataaatggagaa 71
             |||||||||||||| ||||||||
Sbjct: 33534 aataagaaagtatatatggagaa 33512
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>gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence
          Length = 191684

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    gaacaaataagaaagtata 62
             |||||||||||||||||||
Sbjct: 96635 gaacaaataagaaagtata 96653
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>gb|AC015864.5| Homo sapiens chromosome 18, clone RP11-54A1, complete sequence
          Length = 177410

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 16     atgaacatggccatacacatatt 38
              ||||||||||||||||| |||||
Sbjct: 144677 atgaacatggccatacaaatatt 144699
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>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence
          Length = 183599

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 29/31 (93%), Gaps = 1/31 (3%)
 Strand = Plus / Minus

                                            
Query: 47    caaataagaaagtataaatggagaaggaaaa 77
             |||||||||||| | ||||||||||||||||
Sbjct: 97466 caaataagaaagaa-aaatggagaaggaaaa 97437
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>gb|AC000067.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 100h In DGCR Region,
             complete sequence
          Length = 40645

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    aaggaaaacccaaagcaat 88
             |||||||||||||||||||
Sbjct: 17806 aaggaaaacccaaagcaat 17824
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>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221540

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 36     attcttaggaacaaataagaaag 58
              ||||||||||||||| |||||||
Sbjct: 193767 attcttaggaacaaaaaagaaag 193789
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 60      ataaatggagaaggaaaac 78
               |||||||||||||||||||
Sbjct: 4847878 ataaatggagaaggaaaac 4847860
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>gb|AC093736.3| Homo sapiens BAC clone RP11-18K13 from 4, complete sequence
          Length = 119266

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 39     cttaggaacaaataagaaa 57
              |||||||||||||||||||
Sbjct: 112212 cttaggaacaaataagaaa 112194
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>gb|AC012038.19|AC012038 Homo sapiens 12 BAC RP11-547C5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 73390

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    aaataagaaagtataaatg 66
             |||||||||||||||||||
Sbjct: 45032 aaataagaaagtataaatg 45014
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>gb|AC084463.1|AC084463 Caenorhabditis briggsae cosmid CB037F21, complete sequence
          Length = 85644

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    cttaggaacaaataagaaa 57
             |||||||||||||||||||
Sbjct: 19513 cttaggaacaaataagaaa 19495
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>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1148_D05
          Length = 155146

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 19     aacatggccatacacatattctt 41
              ||||||||| |||||||||||||
Sbjct: 144372 aacatggccgtacacatattctt 144350
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>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017H11
          Length = 158374

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 19    aacatggccatacacatattctt 41
             ||||||||| |||||||||||||
Sbjct: 89092 aacatggccgtacacatattctt 89070
to top
>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    ataaatggagaaggaaaac 78
             |||||||||||||||||||
Sbjct: 90544 ataaatggagaaggaaaac 90562
to top
>emb|AL929507.37| Zebrafish DNA sequence from clone DKEY-7C18 in linkage group 20, complete
              sequence
          Length = 214404

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     agaaagtataaatggagaa 71
              |||||||||||||||||||
Sbjct: 166478 agaaagtataaatggagaa 166496
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>dbj|AP003124.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-447G14, complete
             sequence
          Length = 177483

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 54    gaaagtataaatggagaaggaaa 76
             |||||| ||||||||||||||||
Sbjct: 45814 gaaagtgtaaatggagaaggaaa 45836
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>gb|AY656839.1| Leishmania donovani chagasi genomic sequence
          Length = 31876

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 65  tggagaaggaaaacccaaagcaa 87
           |||||||||||||| ||||||||
Sbjct: 899 tggagaaggaaaacgcaaagcaa 877
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 60      ataaatggagaaggaaaac 78
               |||||||||||||||||||
Sbjct: 4847859 ataaatggagaaggaaaac 4847841
to top
>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     ataaatggagaaggaaaac 78
              |||||||||||||||||||
Sbjct: 112082 ataaatggagaaggaaaac 112100
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>gb|AC145348.3| Mus musculus BAC clone RP23-98E22 from 12, complete sequence
          Length = 183380

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     aaacccaaagcaatgtcag 93
              |||||||||||||||||||
Sbjct: 179292 aaacccaaagcaatgtcag 179274
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>gb|AC140321.3| Mus musculus BAC clone RP23-402K6 from 1, complete sequence
          Length = 215225

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 46    acaaataagaaagtataaatgga 68
             |||||||||||||||| ||||||
Sbjct: 71879 acaaataagaaagtattaatgga 71857
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>emb|AL831712.12| Mouse DNA sequence from clone RP23-118A20 on chromosome 4, complete
             sequence
          Length = 210976

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    agaaagtataaatggagaa 71
             |||||||||||||||||||
Sbjct: 79182 agaaagtataaatggagaa 79164
to top
>emb|Z75711.1|CEK02B12 Caenorhabditis elegans Cosmid K02B12, complete sequence
          Length = 38541

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 56    aagtataaatggagaagga 74
             |||||||||||||||||||
Sbjct: 15862 aagtataaatggagaagga 15880
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>dbj|AP006642.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34I09, TM0246c,
             complete sequence
          Length = 52880

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    aaatggagaaggaaaaccc 80
             |||||||||||||||||||
Sbjct: 46427 aaatggagaaggaaaaccc 46409
to top
>gb|AC171727.1| Lycopersicon esculentum chromosome 01 clone C01HBa0163B20, complete
             sequence
          Length = 134102

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 52    aagaaagtataaatggaga 70
             |||||||||||||||||||
Sbjct: 35186 aagaaagtataaatggaga 35204
to top
>dbj|AP001169.1| Homo sapiens genomic DNA, chromosome 18q21, deleted region in human
             lung cancer, complete sequence
          Length = 146736

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 16    atgaacatggccatacacatatt 38
             ||||||||||||||||| |||||
Sbjct: 48381 atgaacatggccatacaaatatt 48359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,851,218
Number of Sequences: 3902068
Number of extensions: 1851218
Number of successful extensions: 132020
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131717
Number of HSP's gapped (non-prelim): 295
length of query: 156
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 134
effective length of database: 17,147,199,772
effective search space: 2297724769448
effective search space used: 2297724769448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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