ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC068605.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 48 0.031
2gb|AC121497.15| Mus musculus chromosome 6, clone RP23-2M23, comp... 48 0.031
3ref|XM_725691.1| Plasmodium yoelii yoelii str. 17XNL protein ser... 48 0.031
4ref|XM_641913.1| Dictyostelium discoideum putative protein tyros... 46 0.12
5ref|XM_641772.1| Dictyostelium discoideum hypothetical protein (... 46 0.12
6gb|AY232273.1| Dictyostelium discoideum putative protein Roco11 ... 46 0.12
7emb|CR589947.14| Zebrafish DNA sequence from clone CH211-110E4 i... 46 0.12
8ref|XM_632227.1| Dictyostelium discoideum hypothetical protein (... 44 0.49
9ref|XM_642541.1| Dictyostelium discoideum hypothetical protein (... 44 0.49
10ref|XM_642448.1| Dictyostelium discoideum hypothetical protein (... 44 0.49
11gb|AY484465.1| Dictyostelium discoideum kinesin family member 12... 44 0.49
12gb|AC008288.8|AC008288 Drosophila melanogaster, chromosome 2R, r... 44 0.49
13gb|AC009342.5|AC009342 Drosophila melanogaster, chromosome 2R, r... 44 0.49
14gb|AC007559.3| Homo sapiens BAC clone RP11-364J6 from 2, complet... 44 0.49
15gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423... 44 0.49
16gb|AY105224.1| Zea mays PCO102615 mRNA sequence 44 0.49
17gb|AE003790.2| Drosophila melanogaster chromosome 2R, section 7 ... 44 0.49
18ref|NM_118265.2| Arabidopsis thaliana structural molecule AT4G21... 42 1.9
19ref|NM_202855.1| Arabidopsis thaliana structural molecule AT4G21... 42 1.9
20ref|XM_640757.1| Dictyostelium discoideum hypothetical protein (... 42 1.9
21ref|XM_715404.1| Candida albicans SC5314 putative transcription ... 42 1.9
22ref|XM_715173.1| Candida albicans SC5314 putative transcription ... 42 1.9
23gb|AC148466.2| Xenopus tropicalis clone CH216-69C13, complete se... 42 1.9
24gb|AC120241.5| Rattus norvegicus X BAC CH230-390I1 (Children's H... 42 1.9
25gb|AY096741.1| Arabidopsis thaliana putative membrane associated... 42 1.9
26gb|AY070416.1| Arabidopsis thaliana putative membrane associated... 42 1.9
27emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, ... 42 1.9
28emb|AL022603.1|ATF18E5 Arabidopsis thaliana DNA chromosome 4, BA... 42 1.9
29ref|XM_628241.1| Cryptosporidium parvum Iowa II cyclin'cyclophil... 42 1.9
30emb|BX827866.1|CNS0A306 Arabidopsis thaliana Full-length cDNA Co... 42 1.9
31emb|BX827571.1|CNS0A2R4 Arabidopsis thaliana Full-length cDNA Co... 42 1.9
32gb|AY087306.1| Arabidopsis thaliana clone 33975 mRNA, complete s... 42 1.9
33gb|AY395061.1|AH013464S3 Schistosoma mansoni thyroid hormone rec... 42 1.9
34gb|AY395038.1| Schistosoma mansoni thyroid hormone receptor alph... 42 1.9
35gb|AC132243.3| Mus musculus BAC clone RP24-414C11 from 5, comple... 42 1.9
36gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, com... 40 7.6
37ref|XM_631862.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
38ref|XM_639049.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
39ref|XM_642245.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
40ref|XM_641632.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
41ref|XM_640482.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
42ref|XM_640195.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
43ref|XM_638944.1| Dictyostelium discoideum paxillin-like protein ... 40 7.6
44ref|XM_635768.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
45ref|XM_629759.1| Dictyostelium discoideum hypothetical protein (... 40 7.6
46gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome... 40 7.6
47gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosom... 40 7.6
48gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875... 40 7.6
49gb|AC126796.4| Mus musculus BAC clone RP23-384F19 from chromosom... 40 7.6
50gb|AC123949.5| Mus musculus BAC clone RP23-119H13 from 14, compl... 40 7.6
51emb|AL590239.7| Human DNA sequence from clone RP11-466D24 on chr... 40 7.6
52emb|AL390786.15| Human DNA sequence from clone RP11-219F10 on ch... 40 7.6
53gb|AF158101.6| Enterobacteria phage T4, complete genome 40 7.6
54emb|AL356913.15| Human DNA sequence from clone RP4-759M20 on chr... 40 7.6
55emb|BX897743.8| Zebrafish DNA sequence from clone CH211-164N21 i... 40 7.6
56emb|AJ002382.1|DDPAXB Dictyostelium discoideum mRNA for paxillin... 40 7.6
57emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 m... 40 7.6
58emb|AL954248.1| Pan troglodytes chromosome 22 clone PTB-061A04 m... 40 7.6
59emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chrom... 40 7.6
60gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, comp... 40 7.6
61gb|AC119572.26| Ustilago hordei strain 4875-4 clone uhobac-5d9, ... 40 7.6
62gb|AC114899.5| Ustilago hordei strain 4875-4 clone uhobac-1n1, c... 40 7.6
63gb|M20298.1|PT4TTA Enterobacteria phage T4 gene 28 protein (28) ... 40 7.6
64gb|AC021134.8| Homo sapiens BAC clone RP11-402D23 from 4, comple... 40 7.6
65gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosom... 40 7.6
66gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643... 40 7.6
67gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067... 40 7.6
68gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701... 40 7.6
69gb|AC016651.8| Homo sapiens chromosome 5 clone RP1-251I12, compl... 40 7.6
70dbj|AB075928.1| Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, ... 40 7.6
71dbj|AP006271.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-1... 40 7.6
72gb|AC018632.1|AC018632 Genomic Sequence For Arabidopsis thaliana... 40 7.6
73emb|BX950197.23| Zebrafish DNA sequence from clone CH211-123N8 i... 40 7.6
74emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain... 40 7.6
75emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, comp... 40 7.6
76emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chr... 40 7.6 
>gb|AC068605.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-284I15, complete
             sequence
          Length = 198551

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 62    ctcatttacaactttctatctaagaaaa 89
             ||||||||||||||| ||||||||||||
Sbjct: 21840 ctcatttacaactttatatctaagaaaa 21813
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>gb|AC121497.15| Mus musculus chromosome 6, clone RP23-2M23, complete sequence
          Length = 231059

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 62     ctcatttacaactttctatctaagaaaa 89
              ||||||||||||||| ||||||||||||
Sbjct: 133996 ctcatttacaactttatatctaagaaaa 134023
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>ref|XM_725691.1| Plasmodium yoelii yoelii str. 17XNL protein serine/threonine
           kinase-1 (PY02853) partial mRNA
          Length = 1527

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 373 caacgtcatcaacntcatcatcaacatcatc 403
           |||| |||||||| |||||||||||||||||
Sbjct: 451 caacatcatcaacatcatcatcaacatcatc 421
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>ref|XM_641913.1| Dictyostelium discoideum putative protein tyrosine kinase
            (DDB0191297), partial mRNA
          Length = 4464

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 378  tcatcaacntcatcatcaacatcatc 403
            |||||||| |||||||||||||||||
Sbjct: 2716 tcatcaacatcatcatcaacatcatc 2741



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 381  tcaacntcatcatcaacatcatc 403
            ||||| |||||||||||||||||
Sbjct: 2707 tcaacatcatcatcaacatcatc 2729
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>ref|XM_641772.1| Dictyostelium discoideum hypothetical protein (DDB0189950), partial
            mRNA
          Length = 4245

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 378  tcatcaacntcatcatcaacatcatc 403
            |||||||| |||||||||||||||||
Sbjct: 1612 tcatcaacatcatcatcaacatcatc 1637
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>gb|AY232273.1| Dictyostelium discoideum putative protein Roco11 (roco11) gene,
            complete cds
          Length = 4865

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 378  tcatcaacntcatcatcaacatcatc 403
            |||||||| |||||||||||||||||
Sbjct: 3027 tcatcaacatcatcatcaacatcatc 3052



 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 381  tcaacntcatcatcaacatcatc 403
            ||||| |||||||||||||||||
Sbjct: 3018 tcaacatcatcatcaacatcatc 3040
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>emb|CR589947.14| Zebrafish DNA sequence from clone CH211-110E4 in linkage group 15,
            complete sequence
          Length = 91956

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 378  tcatcaacntcatcatcaacatcatc 403
            |||||||| |||||||||||||||||
Sbjct: 2094 tcatcaacatcatcatcaacatcatc 2119



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 378  tcatcaacntcatcatcaacatcatc 403
            |||||||| |||||||||||||||||
Sbjct: 2058 tcatcaacatcatcatcaacatcatc 2083



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 378  tcatcaacntcatcatcaacatcatc 403
            |||||||| |||||||||||||||||
Sbjct: 2046 tcatcaacatcatcatcaacatcatc 2071
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>ref|XM_632227.1| Dictyostelium discoideum hypothetical protein (DDB0187373), partial
            mRNA
          Length = 2106

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 379  catcaacntcatcatcaacatcatc 403
            ||||||| |||||||||||||||||
Sbjct: 1094 catcaacatcatcatcaacatcatc 1118
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>ref|XM_642541.1| Dictyostelium discoideum hypothetical protein (DDB0201555), partial
           mRNA
          Length = 4500

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 378 tcatcaacntcatcatcaacatcat 402
           |||||||| ||||||||||||||||
Sbjct: 222 tcatcaacatcatcatcaacatcat 246
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>ref|XM_642448.1| Dictyostelium discoideum hypothetical protein (DDB0189765), partial
           mRNA
          Length = 294

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 379 catcaacntcatcatcaacatcatc 403
           ||||||| |||||||||||||||||
Sbjct: 236 catcaacatcatcatcaacatcatc 260
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>gb|AY484465.1| Dictyostelium discoideum kinesin family member 12 gene, complete
           cds
          Length = 6808

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 378 tcatcaacntcatcatcaacatcat 402
           |||||||| ||||||||||||||||
Sbjct: 526 tcatcaacatcatcatcaacatcat 550
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>gb|AC008288.8|AC008288 Drosophila melanogaster, chromosome 2R, region 42E-42E, BAC clone
             BACR36G11, complete sequence
          Length = 174751

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 387   tcatcatcaacatcatccaacg 408
             ||||||||||||||||||||||
Sbjct: 87244 tcatcatcaacatcatccaacg 87223
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>gb|AC009342.5|AC009342 Drosophila melanogaster, chromosome 2R, region 42E-43A, BAC clone
             BACR29G01, complete sequence
          Length = 165855

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 387   tcatcatcaacatcatccaacg 408
             ||||||||||||||||||||||
Sbjct: 63653 tcatcatcaacatcatccaacg 63674
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>gb|AC007559.3| Homo sapiens BAC clone RP11-364J6 from 2, complete sequence
          Length = 156374

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 379  catcaacntcatcatcaacatcatc 403
            ||||||| |||||||||||||||||
Sbjct: 9807 catcaacatcatcatcaacatcatc 9831
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>gb|AC116956.2| Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4,
             complete sequence
          Length = 266544

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 378   tcatcaacntcatcatcaacatcatccaa 406
             |||||||| |||||||||||| |||||||
Sbjct: 26743 tcatcaacatcatcatcaacaacatccaa 26715
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>gb|AY105224.1| Zea mays PCO102615 mRNA sequence
          Length = 1561

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 234  ttcttcatcttcgagtaaccccggagtcctcgagatttcgccagctctctcagctccg 291
            |||||| |||||||||| ||   || ||||||||| || || ||||||||||||||||
Sbjct: 1250 ttcttcttcttcgagtaccctttgattcctcgagactttgcgagctctctcagctccg 1193



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 51   agttaaccttgctcatttacaactttcta 79
            ||||| |||||||||||||||| ||||||
Sbjct: 1380 agttagccttgctcatttacaattttcta 1352
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>gb|AE003790.2| Drosophila melanogaster chromosome 2R, section 7 of 73 of the complete
              sequence
          Length = 348873

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 387    tcatcatcaacatcatccaacg 408
              ||||||||||||||||||||||
Sbjct: 309585 tcatcatcaacatcatccaacg 309606
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>ref|NM_118265.2| Arabidopsis thaliana structural molecule AT4G21450 transcript
           variant AT4G21450.1 mRNA, complete cds
          Length = 1219

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 tcatcaacntcatcatcaacatca 401
           |||||||| |||||||||||||||
Sbjct: 284 tcatcaacatcatcatcaacatca 307
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>ref|NM_202855.1| Arabidopsis thaliana structural molecule AT4G21450 transcript
           variant AT4G21450.2 mRNA, complete cds
          Length = 1480

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 tcatcaacntcatcatcaacatca 401
           |||||||| |||||||||||||||
Sbjct: 284 tcatcaacatcatcatcaacatca 307
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>ref|XM_640757.1| Dictyostelium discoideum hypothetical protein (DDB0190152), partial
            mRNA
          Length = 11052

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 378  tcatcaacntcatcatcaacatca 401
            |||||||| |||||||||||||||
Sbjct: 4924 tcatcaacatcatcatcaacatca 4947
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>ref|XM_715404.1| Candida albicans SC5314 putative transcription factor (CaO19_2747),
            mRNA
          Length = 3090

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 378  tcatcaacntcatcatcaacatca 401
            |||||||| |||||||||||||||
Sbjct: 2984 tcatcaacatcatcatcaacatca 2961
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>ref|XM_715173.1| Candida albicans SC5314 putative transcription factor (CaO19_10261),
            mRNA
          Length = 3090

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 378  tcatcaacntcatcatcaacatca 401
            |||||||| |||||||||||||||
Sbjct: 2984 tcatcaacatcatcatcaacatca 2961
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>gb|AC148466.2| Xenopus tropicalis clone CH216-69C13, complete sequence
          Length = 177332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 275    cagctctctcagctccgtgaccttg 299
              ||||||||||||||| |||||||||
Sbjct: 140466 cagctctctcagctctgtgaccttg 140490
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>gb|AC120241.5| Rattus norvegicus X BAC CH230-390I1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 174991

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 378    tcatcaacntcatcatcaacatca 401
              |||||||| |||||||||||||||
Sbjct: 171936 tcatcaacatcatcatcaacatca 171959
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>gb|AY096741.1| Arabidopsis thaliana putative membrane associated protein
           (At4g21450) mRNA, complete cds
          Length = 919

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 tcatcaacntcatcatcaacatca 401
           |||||||| |||||||||||||||
Sbjct: 171 tcatcaacatcatcatcaacatca 194
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>gb|AY070416.1| Arabidopsis thaliana putative membrane associated protein
           (At4g21450) mRNA, complete cds
          Length = 1200

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 tcatcaacntcatcatcaacatca 401
           |||||||| |||||||||||||||
Sbjct: 249 tcatcaacatcatcatcaacatca 272
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>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55
          Length = 194916

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   tcatcaacntcatcatcaacatca 401
             |||||||| |||||||||||||||
Sbjct: 44171 tcatcaacatcatcatcaacatca 44194
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>emb|AL022603.1|ATF18E5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project)
          Length = 95266

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   tcatcaacntcatcatcaacatca 401
             |||||||| |||||||||||||||
Sbjct: 31163 tcatcaacatcatcatcaacatca 31186
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>ref|XM_628241.1| Cryptosporidium parvum Iowa II cyclin'cyclophilin like
           peptidyl-prolyl cis-trans isomerase fused to (cgd7_520),
           partial mRNA
          Length = 2337

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 377 gtcatcaacntcatcatcaacatcatcc 404
           ||||||| | ||||||||||||||||||
Sbjct: 264 gtcatcatcatcatcatcaacatcatcc 237
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>emb|BX827866.1|CNS0A306 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH29ZC07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1064

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 tcatcaacntcatcatcaacatca 401
           |||||||| |||||||||||||||
Sbjct: 167 tcatcaacatcatcatcaacatca 190
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>emb|BX827571.1|CNS0A2R4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS76ZH03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1168

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 tcatcaacntcatcatcaacatca 401
           |||||||| |||||||||||||||
Sbjct: 261 tcatcaacatcatcatcaacatca 284
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>gb|AY087306.1| Arabidopsis thaliana clone 33975 mRNA, complete sequence
          Length = 1201

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 378 tcatcaacntcatcatcaacatca 401
           |||||||| |||||||||||||||
Sbjct: 281 tcatcaacatcatcatcaacatca 304
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>gb|AY395061.1|AH013464S3 Schistosoma mansoni thyroid hormone receptor alpha gene, exon 3 and
           partial cds
          Length = 2412

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 373 caacgtcatcaacntcatcatcaacatcatcc 404
           |||| |||||||| |||||||||||| |||||
Sbjct: 967 caacatcatcaacatcatcatcaacaacatcc 998
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>gb|AY395038.1| Schistosoma mansoni thyroid hormone receptor alpha mRNA, complete cds
          Length = 3506

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 373  caacgtcatcaacntcatcatcaacatcatcc 404
            |||| |||||||| |||||||||||| |||||
Sbjct: 1532 caacatcatcaacatcatcatcaacaacatcc 1563
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>gb|AC132243.3| Mus musculus BAC clone RP24-414C11 from 5, complete sequence
          Length = 185506

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    caactttctatctaagaaaaa 90
             |||||||||||||||||||||
Sbjct: 37156 caactttctatctaagaaaaa 37176
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>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence
          Length = 208274

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 379   catcaacntcatcatcaacatca 401
             ||||||| |||||||||||||||
Sbjct: 41024 catcaacatcatcatcaacatca 41002
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>ref|XM_631862.1| Dictyostelium discoideum hypothetical protein (DDB0187753), partial
            mRNA
          Length = 1770

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                           
Query: 373  caacgtcatcaacntcatcatcaacatcatc 403
            |||| |||||||| ||| |||||||||||||
Sbjct: 1511 caacatcatcaacatcaacatcaacatcatc 1541
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>ref|XM_639049.1| Dictyostelium discoideum hypothetical protein (DDB0217545), partial
            mRNA
          Length = 3186

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 379  catcaacntcatcatcaacatca 401
            ||||||| |||||||||||||||
Sbjct: 1976 catcaacatcatcatcaacatca 1998
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>ref|XM_642245.1| Dictyostelium discoideum hypothetical protein (DDB0189573), partial
            mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 378  tcatcaacntcatcatcaacatcatcc 404
            |||||| | ||||||||||||||||||
Sbjct: 1711 tcatcatcatcatcatcaacatcatcc 1737
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>ref|XM_641632.1| Dictyostelium discoideum hypothetical protein (DDB0220519), partial
            mRNA
          Length = 2007

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 394  caacatcatccaacggttccagataatc 421
            |||| |||||||| ||||||||||||||
Sbjct: 1411 caacttcatccaatggttccagataatc 1384
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>ref|XM_640482.1| Dictyostelium discoideum hypothetical protein (DDB0216874), partial
            mRNA
          Length = 5538

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                           
Query: 373  caacgtcatcaacntcatcatcaacatcatc 403
            |||| |||||| | |||||||||||||||||
Sbjct: 3263 caacatcatcatcatcatcatcaacatcatc 3293
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>ref|XM_640195.1| Dictyostelium discoideum hypothetical protein (DDB0217017), partial
           mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 381 tcaacntcatcatcaacatcatc 403
           ||||| |||||||||||||||||
Sbjct: 874 tcaacatcatcatcaacatcatc 896
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>ref|XM_638944.1| Dictyostelium discoideum paxillin-like protein (DDB0185208),
           partial mRNA
          Length = 1710

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 379 catcaacntcatcatcaacatca 401
           ||||||| |||||||||||||||
Sbjct: 772 catcaacatcatcatcaacatca 794
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>ref|XM_635768.1| Dictyostelium discoideum hypothetical protein (DDB0218286), partial
            mRNA
          Length = 1728

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 378  tcatcaacntcatcatcaacatc 400
            |||||||| ||||||||||||||
Sbjct: 1354 tcatcaacatcatcatcaacatc 1376
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>ref|XM_629759.1| Dictyostelium discoideum hypothetical protein (DDB0184155), partial
            mRNA
          Length = 5211

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                           
Query: 373  caacgtcatcaacntcatcatcaacatcatc 403
            |||| |||||| | |||||||||||||||||
Sbjct: 4640 caacatcatcatcatcatcatcaacatcatc 4670
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>gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome 19, complete sequence
          Length = 185192

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 379    catcaacntcatcatcaacatca 401
              ||||||| |||||||||||||||
Sbjct: 174506 catcaacatcatcatcaacatca 174484
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>gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosome 19, complete sequence
          Length = 197765

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 379    catcaacntcatcatcaacatca 401
              ||||||| |||||||||||||||
Sbjct: 173865 catcaacatcatcatcaacatca 173887
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>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4,
              complete sequence
          Length = 257109

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 381    tcaacntcatcatcaacatcatc 403
              ||||| |||||||||||||||||
Sbjct: 176449 tcaacatcatcatcaacatcatc 176471
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>gb|AC126796.4| Mus musculus BAC clone RP23-384F19 from chromosome 10, complete
             sequence
          Length = 211025

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 377   gtcatcaacntcatcatcaacatcatc 403
             ||||||| | |||||||||||||||||
Sbjct: 71747 gtcatcatcatcatcatcaacatcatc 71721
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>gb|AC123949.5| Mus musculus BAC clone RP23-119H13 from 14, complete sequence
          Length = 196995

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    agctcaggtcagaaacttcc 323
              ||||||||||||||||||||
Sbjct: 131297 agctcaggtcagaaacttcc 131278
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>emb|AL590239.7| Human DNA sequence from clone RP11-466D24 on chromosome 6, complete
            sequence
          Length = 127316

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  gaaggactgccttcctgact 346
            ||||||||||||||||||||
Sbjct: 8812 gaaggactgccttcctgact 8831
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>emb|AL390786.15| Human DNA sequence from clone RP11-219F10 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 104712

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    ctaagaaaaagggcactggt 100
             ||||||||||||||||||||
Sbjct: 70743 ctaagaaaaagggcactggt 70762
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>gb|AF158101.6| Enterobacteria phage T4, complete genome
          Length = 168903

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    ctcttcttcatcttcgagta 250
              ||||||||||||||||||||
Sbjct: 120910 ctcttcttcatcttcgagta 120929
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>emb|AL356913.15| Human DNA sequence from clone RP4-759M20 on chromosome 1p31.2-32.1
             Contains the 5' end of a novel gene (DKFZp761D221),
             complete sequence
          Length = 128495

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   aaacttccagggaaggactg 335
             ||||||||||||||||||||
Sbjct: 90565 aaacttccagggaaggactg 90546
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>emb|BX897743.8| Zebrafish DNA sequence from clone CH211-164N21 in linkage group 10,
             complete sequence
          Length = 112314

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 373   caacgtcatcaacntcatcatcaacatcatc 403
             |||| |||||| | |||||||||||||||||
Sbjct: 92006 caacctcatcatcatcatcatcaacatcatc 92036
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>emb|AJ002382.1|DDPAXB Dictyostelium discoideum mRNA for paxillin-like protein, PaxB
          Length = 1812

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 379 catcaacntcatcatcaacatca 401
           ||||||| |||||||||||||||
Sbjct: 842 catcaacatcatcatcaacatca 864
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>emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 map 22q22.3, complete
             sequence
          Length = 182974

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   ctgccttcctgactgtcatc 352
             ||||||||||||||||||||
Sbjct: 16031 ctgccttcctgactgtcatc 16050
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>emb|AL954248.1| Pan troglodytes chromosome 22 clone PTB-061A04 map 22q22.3, complete
              sequence
          Length = 162730

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    ctgccttcctgactgtcatc 352
              ||||||||||||||||||||
Sbjct: 161145 ctgccttcctgactgtcatc 161164
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>emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chromosome 4, complete
             sequence
          Length = 149318

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 63    tcatttacaactttctatctaagaaaaa 90
             |||||||||||||| |||||||| ||||
Sbjct: 40144 tcatttacaactttatatctaaggaaaa 40171
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>gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, complete sequence
          Length = 208510

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 379    catcaacntcatcatcaacatca 401
              ||||||| |||||||||||||||
Sbjct: 164101 catcaacatcatcatcaacatca 164079
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>gb|AC119572.26| Ustilago hordei strain 4875-4 clone uhobac-5d9, complete sequence
          Length = 152059

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 373  caacgtcatcaacntcatcatca 395
            ||||||||||||| |||||||||
Sbjct: 1114 caacgtcatcaacctcatcatca 1092
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>gb|AC114899.5| Ustilago hordei strain 4875-4 clone uhobac-1n1, complete sequence
          Length = 100185

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 373   caacgtcatcaacntcatcatca 395
             ||||||||||||| |||||||||
Sbjct: 96851 caacgtcatcaacctcatcatca 96829
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>gb|M20298.1|PT4TTA Enterobacteria phage T4 gene 28 protein (28) gene, partial cds; and
            tail-tube assembly protein (29), tail-tube assembly
            protein (48), and tail-tube assembly protein (54) genes,
            complete cds
          Length = 3880

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  ctcttcttcatcttcgagta 250
            ||||||||||||||||||||
Sbjct: 2064 ctcttcttcatcttcgagta 2083
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>gb|AC021134.8| Homo sapiens BAC clone RP11-402D23 from 4, complete sequence
          Length = 135692

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 373  caacgtcatcaacntcatcatcaacatcatc 403
            |||| |||||| | |||||||||||||||||
Sbjct: 4632 caacatcatcatcgtcatcatcaacatcatc 4602
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>gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosome 17, complete
             sequence
          Length = 158695

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   tcatcatcaacatcatccaa 406
             ||||||||||||||||||||
Sbjct: 71432 tcatcatcaacatcatccaa 71413
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>gb|AC116982.2| Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4,
              complete sequence
          Length = 256879

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                             
Query: 373    caacgtcatcaacntcatcatcaacatcatc 403
              |||| |||||| | |||||||||||||||||
Sbjct: 123020 caacatcatcatcatcatcatcaacatcatc 123050
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>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4,
              complete sequence
          Length = 405682

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 379    catcaacntcatcatcaacatca 401
              ||||||| |||||||||||||||
Sbjct: 211636 catcaacatcatcatcaacatca 211658
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>gb|AC117070.2| Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4,
             complete sequence
          Length = 136240

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 379   catcaacntcatcatcaacatca 401
             ||||||| |||||||||||||||
Sbjct: 68758 catcaacatcatcatcaacatca 68736
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>gb|AC016651.8| Homo sapiens chromosome 5 clone RP1-251I12, complete sequence
          Length = 117963

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   tcatcatcaacatcatccaa 406
             ||||||||||||||||||||
Sbjct: 75377 tcatcatcaacatcatccaa 75358
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>dbj|AB075928.1| Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, zCNRv4, zCNRv5, zCNRv6,
             zCNRv7, zCNRv8, zCNRv9, zCNRv10, zCNRv11,zCNRv12, zCNRc)
             genes, complete cds
          Length = 116542

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 377   gtcatcaacntcatcatcaacatcatc 403
             ||||||| | |||||||||||||||||
Sbjct: 11777 gtcatcatcatcatcatcaacatcatc 11751
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>dbj|AP006271.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-155P15, chromosome 22,
             complete sequence
          Length = 129950

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   ctgccttcctgactgtcatc 352
             ||||||||||||||||||||
Sbjct: 61379 ctgccttcctgactgtcatc 61398
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>gb|AC018632.1|AC018632 Genomic Sequence For Arabidopsis thaliana Clone F3F24, Chromosome V,
              complete sequence
          Length = 151828

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                             
Query: 367    tatctgcaacgtcatcaacntcatcatcaac 397
              ||||| ||||||||||| | |||||||||||
Sbjct: 114510 tatcttcaacgtcatcatcctcatcatcaac 114480
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>emb|BX950197.23| Zebrafish DNA sequence from clone CH211-123N8 in linkage group 10,
             complete sequence
          Length = 155683

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                            
Query: 373   caacgtcatcaacntcatcatcaacatcatc 403
             |||| |||||| | |||||||||||||||||
Sbjct: 50346 caacctcatcatcatcatcatcaacatcatc 50376
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>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364
          Length = 526707

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 373    caacgtcatcaacntcatcatca 395
              ||||||||||||| |||||||||
Sbjct: 370856 caacgtcatcaacctcatcatca 370834
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>emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, complete sequence
          Length = 246777

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    tcatcatcaacatcatccaa 406
              ||||||||||||||||||||
Sbjct: 214651 tcatcatcaacatcatccaa 214670
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>emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chromosome 2, complete
             sequence
          Length = 183985

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    agccaaaggagacagcaaca 29
             ||||||||||||||||||||
Sbjct: 25777 agccaaaggagacagcaaca 25758


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,059,976
Number of Sequences: 3902068
Number of extensions: 4059976
Number of successful extensions: 81699
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81426
Number of HSP's gapped (non-prelim): 267
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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