| Clone Name | rbags30l23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ606027.1| Triticum aestivum partial mRNA for putative transmembrane protein-like protein (at1G21900 gene) Length = 394 Score = 638 bits (322), Expect = e-180 Identities = 370/386 (95%) Strand = Plus / Minus Query: 260 cgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgctcacttccc 319 ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 390 cgcccagtgacaagatgctgaaccaggcaaccctggaattcgttttctcgctcacttccc 331 Query: 320 gcatctccgcttcccttgctttcaaatataataagttgtgatgaatggattccactgcag 379 |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| Sbjct: 330 gcatctccgcttcccttgctttgagatataataagttatgatgaatggattccactgcag 271 Query: 380 cttcaagtttcgcgagttctaattcaacaccctcaattttctccttcttggcgacagaat 439 |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| | Sbjct: 270 cttcaagtttcgcgagctctaattcaacaccctcaatcttctccttcttggcaacagagt 211 Query: 440 cccagtcctttgtcgcaatccctatcttccaatcaagacttagagatactcctgatcctt 499 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 210 cccagtcctttgtcgcaatccctatcttccaatcaagatttagagatactcctgatcctt 151 Query: 500 tctctgcactgtctagccagaagcaagcaaggtagtttccagcttctgcagttgtaaatg 559 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 150 tctctgcgctgtctagccagaagcaagcaaggtagtttccagcttctgaagttgtaaatg 91 Query: 560 caaattggcccgctgtggcattttctttatgatgtacagtattgccatatggtgaggtaa 619 |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 90 caaactggcccactgtggcattttctttgtgatgtacagtattgccatatggtgaggtaa 31 Query: 620 ccttgacggcgacggtggggtgggcg 645 |||||||||||||||||||||||||| Sbjct: 30 ccttgacggcgacggtggggtgggcg 5
>dbj|AK120435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097P16, full insert sequence Length = 866 Score = 505 bits (255), Expect = e-140 Identities = 417/471 (88%) Strand = Plus / Minus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||| ||||||| ||||| | |||||| ||||||| |||| |||| Sbjct: 698 agatgagcttcttcttccggaagaacccttgaagatgccacaactgcaaaacggacacca 639 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 ||| ||| || |||||||||| |||||| ||||| ||||||||||||||||||||||| | Sbjct: 638 cgatgcagactcccagtgacaggatgctaaaccatgcaaccctagaatttgttttctcac 579 Query: 311 tcacttcccgcatctccgcttcccttgctttcaaatataataagttgtgatgaatggatt 370 ||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||| Sbjct: 578 tcactgtccgcatctccgcttcccttgctttgagatataatagattgtgatgaatggatt 519 Query: 371 ccactgcagcttcaagtttcgcgagttctaattcaacaccctcaattttctccttcttgg 430 |||| ||||||||||||||| |||||||| ||| |||||||||||||| |||||||| | Sbjct: 518 ccaccgcagcttcaagtttcctgagttctagttctacaccctcaattttttccttcttag 459 Query: 431 cgacagaatcccagtcctttgtcgcaatccctatcttccaatcaagacttagagatactc 490 | |||| ||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| Sbjct: 458 caacagtgtcccaatcctttgccgcaatccctatcttccaatcaagatttagggatactc 399 Query: 491 ctgatcctttctctgcactgtctagccagaagcaagcaaggtagtttccagcttctgcag 550 ||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| || Sbjct: 398 ctgatcctttctccggactgtctagccagaagcacgcaaggtaatttccagcttctgaag 339 Query: 551 ttgtaaatgcaaattggcccgctgtggcattttctttatgatgtacagtattgccatatg 610 ||||||| ||||| || |||| ||||||||| || || |||||||||||||| ||||||| Sbjct: 338 ttgtaaacgcaaactgacccgttgtggcattctcattgtgatgtacagtattaccatatg 279 Query: 611 gtgaggtaaccttgacggcgacggtggggtgggcggtggcgtgggcctcgt 661 ||||||||||||||||||| || |||||||| ||||||| ||||| ||||| Sbjct: 278 gtgaggtaaccttgacggccacagtggggtgcgcggtggggtgggactcgt 228
>gb|AY106022.1| Zea mays PCO144349 mRNA sequence Length = 1010 Score = 345 bits (174), Expect = 1e-91 Identities = 378/446 (84%) Strand = Plus / Minus Query: 193 atgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagaccacg 252 ||||||||||||||| ||||||| ||||| | ||||| | |||||| | ||||| | Sbjct: 799 atgagcttcttcttccggaagaacccttgaaggtgccacagctgcagcacagagacggca 740 Query: 253 acgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgctc 312 ||||| || |||| ||||| |||||||||||| ||||| |||||||| ||| |||||||| Sbjct: 739 acgcagactcccaatgacaggatgctgaaccaggcaactctagaattcgttctctcgctc 680 Query: 313 acttcccgcatctccgcttcccttgctttcaaatataataagttgtgatgaatggattcc 372 ||| ||||| || |||||||||||||| | ||| | ||||| ||||| ||||| || Sbjct: 679 actgttcgcatgtcagcttcccttgctttgagatacagcaagttatgatggatggactcg 620 Query: 373 actgcagcttcaagtttcgcgagttctaattcaacaccctcaattttctccttcttggcg 432 |||||||||||||||||| || |||| ||| || |||||||||||||| ||||| || Sbjct: 619 actgcagcttcaagtttcctaagctctagttctacgccctcaattttctctttcttagca 560 Query: 433 acagaatcccagtcctttgtcgcaatccctatcttccaatcaagacttagagatactcct 492 | || |||||||||||||| |||||||||||||||||||||||| |||||||| |||| Sbjct: 559 atagtatcccagtcctttgcagcaatccctatcttccaatcaagatttagagatgttcct 500 Query: 493 gatcctttctctgcactgtctagccagaagcaagcaaggtagtttccagcttctgcagtt 552 ||||||||||| | ||||||| |||||| || |||||||||||||||||||||| ||| Sbjct: 499 gatcctttctccacgctgtctatccagaaacatgcaaggtagtttccagcttctgaagtg 440 Query: 553 gtaaatgcaaattggcccgctgtggcattttctttatgatgtacagtattgccatatggt 612 || |||||||| ||||||| ||| |||||||| |||||||| |||||||||||||| ||| Sbjct: 439 gtgaatgcaaactggcccgttgtagcattttcattatgatgcacagtattgccatagggt 380 Query: 613 gaggtaaccttgacggcgacggtggg 638 || ||||||||||||||||||||||| Sbjct: 379 gatgtaaccttgacggcgacggtggg 354
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 248 bits (125), Expect = 2e-62 Identities = 191/213 (89%) Strand = Plus / Minus Query: 410 cctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccctatcttcc 469 |||||||||| |||||||| || |||| ||||| ||||||| ||||||||||||||||| Sbjct: 5631630 cctcaattttttccttcttagcaacagtgtcccaatcctttgccgcaatccctatcttcc 5631571 Query: 470 aatcaagacttagagatactcctgatcctttctctgcactgtctagccagaagcaagcaa 529 |||||||| |||| |||||||||||||||||||| | |||||||||||||||||| |||| Sbjct: 5631570 aatcaagatttagggatactcctgatcctttctccggactgtctagccagaagcacgcaa 5631511 Query: 530 ggtagtttccagcttctgcagttgtaaatgcaaattggcccgctgtggcattttctttat 589 |||| ||||||||||||| ||||||||| ||||| || |||| ||||||||| || || | Sbjct: 5631510 ggtaatttccagcttctgaagttgtaaacgcaaactgacccgttgtggcattctcattgt 5631451 Query: 590 gatgtacagtattgccatatggtgaggtaacct 622 ||||||||||||| ||||||||||||||||||| Sbjct: 5631450 gatgtacagtattaccatatggtgaggtaacct 5631418 Score = 145 bits (73), Expect = 2e-31 Identities = 127/145 (87%) Strand = Plus / Minus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||| ||||||| ||||| | |||||| ||||||| |||| |||| Sbjct: 5632346 agatgagcttcttcttccggaagaacccttgaagatgccacaactgcaaaacggacacca 5632287 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 ||| ||| || |||||||||| |||||| ||||| ||||||||||||||||||||||| | Sbjct: 5632286 cgatgcagactcccagtgacaggatgctaaaccatgcaaccctagaatttgttttctcac 5632227 Query: 311 tcacttcccgcatctccgcttccct 335 ||||| |||||||||||||||||| Sbjct: 5632226 tcactgtccgcatctccgcttccct 5632202 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 333 ccttgctttcaaatataataagttgtgatgaatggattccactgcagcttcaagtttcgc 392 ||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 5631812 ccttgctttgagatataatagattgtgatgaatggattccaccgcagcttcaagtttcct 5631753 Query: 393 gagttctaattcaacaccct 412 |||||||| ||| ||||||| Sbjct: 5631752 gagttctagttctacaccct 5631733 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 619 accttgacggcgacggtggggtgggcggtggcgtgggcctcgt 661 ||||||||||| || |||||||| ||||||| ||||| ||||| Sbjct: 5630235 accttgacggccacagtggggtgcgcggtggggtgggactcgt 5630193
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 248 bits (125), Expect = 2e-62 Identities = 191/213 (89%) Strand = Plus / Minus Query: 410 cctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccctatcttcc 469 |||||||||| |||||||| || |||| ||||| ||||||| ||||||||||||||||| Sbjct: 23777 cctcaattttttccttcttagcaacagtgtcccaatcctttgccgcaatccctatcttcc 23718 Query: 470 aatcaagacttagagatactcctgatcctttctctgcactgtctagccagaagcaagcaa 529 |||||||| |||| |||||||||||||||||||| | |||||||||||||||||| |||| Sbjct: 23717 aatcaagatttagggatactcctgatcctttctccggactgtctagccagaagcacgcaa 23658 Query: 530 ggtagtttccagcttctgcagttgtaaatgcaaattggcccgctgtggcattttctttat 589 |||| ||||||||||||| ||||||||| ||||| || |||| ||||||||| || || | Sbjct: 23657 ggtaatttccagcttctgaagttgtaaacgcaaactgacccgttgtggcattctcattgt 23598 Query: 590 gatgtacagtattgccatatggtgaggtaacct 622 ||||||||||||| ||||||||||||||||||| Sbjct: 23597 gatgtacagtattaccatatggtgaggtaacct 23565 Score = 145 bits (73), Expect = 2e-31 Identities = 127/145 (87%) Strand = Plus / Minus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||| ||||||| ||||| | |||||| ||||||| |||| |||| Sbjct: 24493 agatgagcttcttcttccggaagaacccttgaagatgccacaactgcaaaacggacacca 24434 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 ||| ||| || |||||||||| |||||| ||||| ||||||||||||||||||||||| | Sbjct: 24433 cgatgcagactcccagtgacaggatgctaaaccatgcaaccctagaatttgttttctcac 24374 Query: 311 tcacttcccgcatctccgcttccct 335 ||||| |||||||||||||||||| Sbjct: 24373 tcactgtccgcatctccgcttccct 24349 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 333 ccttgctttcaaatataataagttgtgatgaatggattccactgcagcttcaagtttcgc 392 ||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 23959 ccttgctttgagatataatagattgtgatgaatggattccaccgcagcttcaagtttcct 23900 Query: 393 gagttctaattcaacaccct 412 |||||||| ||| ||||||| Sbjct: 23899 gagttctagttctacaccct 23880 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 619 accttgacggcgacggtggggtgggcggtggcgtgggcctcgt 661 ||||||||||| || |||||||| ||||||| ||||| ||||| Sbjct: 22382 accttgacggccacagtggggtgcgcggtggggtgggactcgt 22340
>dbj|AK070007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034G24, full insert sequence Length = 1135 Score = 244 bits (123), Expect = 3e-61 Identities = 384/471 (81%) Strand = Plus / Minus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||||||||| | ||||| | ||||| || |||| || |||| Sbjct: 731 agatgagcttcttcttctggaagtacccttgaaggtgccacaattgcaaaattgaaacca 672 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 | | ||| |||| |||||||| || |||||||| || ||||||| ||||||||||||| Sbjct: 671 caatgcagacgcttagtgacaaaatactgaaccaggctaccctagcgtttgttttctcgc 612 Query: 311 tcacttcccgcatctccgcttcccttgctttcaaatataataagttgtgatgaatggatt 370 ||||| |||||||| |||||||||||||| | ||||| | ||| ||||| ||||||| Sbjct: 611 tcactgttcgcatctctgcttcccttgctttgagatatatcatgttctgatggatggatt 552 Query: 371 ccactgcagcttcaagtttcgcgagttctaattcaacaccctcaattttctccttcttgg 430 ||||| |||||||||| || |||| ||| |||||||||||||| |||||||| | Sbjct: 551 gtactgccacttcaagttttctaagctctagttctacaccctcaattttttccttcttag 492 Query: 431 cgacagaatcccagtcctttgtcgcaatccctatcttccaatcaagacttagagatactc 490 ||| | |||||| ||||||| ||||| || ||||||||||||||| | | ||||| || Sbjct: 491 cgataacatcccaatcctttgctgcaattccaatcttccaatcaagattaatagatattc 432 Query: 491 ctgatcctttctctgcactgtctagccagaagcaagcaaggtagtttccagcttctgcag 550 |||| ||||||||||| || |||| ||||||||| ||||| |||||||| ||||||| || Sbjct: 431 ctgaccctttctctgcgctatctatccagaagcatgcaagatagtttcctgcttctgaag 372 Query: 551 ttgtaaatgcaaattggcccgctgtggcattttctttatgatgtacagtattgccatatg 610 |||| ||||| || || || | || |||||||| || ||||||| || || ||||||| Sbjct: 371 ttgtgaatgcgaactgaccaaccgtagcattttcattgtgatgtaaggtgttcccatatg 312 Query: 611 gtgaggtaaccttgacggcgacggtggggtgggcggtggcgtgggcctcgt 661 |||| |||||||||||||||||||||||||||| || || ||||| ||||| Sbjct: 311 gtgatgtaaccttgacggcgacggtggggtgggaggaggggtgggactcgt 261
>ref|XM_467978.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1135 Score = 236 bits (119), Expect = 8e-59 Identities = 383/471 (81%) Strand = Plus / Minus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||||||||| | ||||| | ||||| || |||| || |||| Sbjct: 731 agatgagcttcttcttctggaagtacccttgaaggtgccacaattgcaaaattgaaacca 672 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 | | ||| |||| |||||||| || |||||||| || ||||||| ||||||||||||| Sbjct: 671 caatgcagacgcttagtgacaaaatactgaaccaggctaccctagcgtttgttttctcgc 612 Query: 311 tcacttcccgcatctccgcttcccttgctttcaaatataataagttgtgatgaatggatt 370 ||||| |||||||| |||||||||||||| | ||||| | ||| ||||| ||||||| Sbjct: 611 tcactgttcgcatctctgcttcccttgctttgagatatatcatgttctgatggatggatt 552 Query: 371 ccactgcagcttcaagtttcgcgagttctaattcaacaccctcaattttctccttcttgg 430 ||||| |||||||||| || |||| ||| |||||||||||||| |||||||| | Sbjct: 551 gtactgccacttcaagttttctaagctctagttctacaccctcaattttttccttcttag 492 Query: 431 cgacagaatcccagtcctttgtcgcaatccctatcttccaatcaagacttagagatactc 490 ||| | |||||| ||||||| ||||| || ||||||||||||||| | | ||||| || Sbjct: 491 cgataacatcccaatcctttgctgcaattccaatcttccaatcaagattaatagatattc 432 Query: 491 ctgatcctttctctgcactgtctagccagaagcaagcaaggtagtttccagcttctgcag 550 |||| ||||||||||| || |||| ||||||||| ||||| |||||||| ||||||| || Sbjct: 431 ctgaccctttctctgcgctatctatccagaagcatgcaagatagtttcctgcttctgaag 372 Query: 551 ttgtaaatgcaaattggcccgctgtggcattttctttatgatgtacagtattgccatatg 610 |||| ||||| || || || | || |||||||| || ||||||| || || ||||||| Sbjct: 371 ttgtgaatgcgaactgaccaaccgtagcattttcattgtgatgtaaggtgttcccatatg 312 Query: 611 gtgaggtaaccttgacggcgacggtggggtgggcggtggcgtgggcctcgt 661 |||| |||||||||||||||| ||||||||||| || || ||||| ||||| Sbjct: 311 gtgatgtaaccttgacggcgatggtggggtgggaggaggggtgggactcgt 261
>gb|AY110362.1| Zea mays CL33987_1 mRNA sequence Length = 932 Score = 167 bits (84), Expect = 6e-38 Identities = 282/350 (80%) Strand = Plus / Minus Query: 289 accctagaatttgttttctcgctcacttcccgcatctccgcttcccttgctttcaaatat 348 ||||| ||||||||| |||| ||||| |||||||| ||||||||| |||| | ||| Sbjct: 547 acccttgaatttgttgtctcactcacagttcgcatctctgcttccctttctttgaggtat 488 Query: 349 aataagttgtgatgaatggattccactgcagcttcaagtttcgcgagttctaattcaaca 408 | ||||| |||||||||| | |||||| ||||||||||| || |||| ||| ||| Sbjct: 487 atcaagttctgatgaatggcctgcactgccacttcaagtttccgaagctctagttctaca 428 Query: 409 ccctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccctatcttc 468 ||||||| ||||||| || | || |||||| || ||||| || ||||| |||||| Sbjct: 427 ccctcaannnnnnccttcttagcaatagcatcccaatcttttgttgcgatcccaatcttc 368 Query: 469 caatcaagacttagagatactcctgatcctttctctgcactgtctagccagaagcaagca 528 || |||||| | | ||||||||||||||||||||||||||| || | ||||||||| ||| Sbjct: 367 cagtcaagattcacagatactcctgatcctttctctgcactatcaacccagaagcatgca 308 Query: 529 aggtagtttccagcttctgcagttgtaaatgcaaattggcccgctgtggcattttcttta 588 | |||||||||||||||||| ||||| ||||||||||| || |||| | ||| || | Sbjct: 307 acgtagtttccagcttctgcggttgtgaatgcaaattgaccaactgtagaattctcactg 248 Query: 589 tgatgtacagtattgccatatggtgaggtaaccttgacggcgacggtggg 638 ||||| | || || ||||||||||| |||||||||||||||| |||||| Sbjct: 247 tgatgcaaggtgttcccatatggtgaagtaaccttgacggcgatggtggg 198
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Plus Query: 410 cctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccctatcttcc 469 |||||||||| |||||||| |||| | |||||| ||||||| ||||| || ||||||| Sbjct: 32372862 cctcaattttttccttcttagcgataacatcccaatcctttgctgcaattccaatcttcc 32372921 Query: 470 aatcaagacttagagatactcctgatcctttctctgcactgtctagccagaagcaagcaa 529 |||||||| | | ||||| |||||| ||||||||||| || |||| ||||||||| |||| Sbjct: 32372922 aatcaagattaatagatattcctgaccctttctctgcgctatctatccagaagcatgcaa 32372981 Query: 530 ggtagtttccagcttctgcagttgtaaatgcaaattggcccgctgtggcattttctttat 589 | |||||||| ||||||| |||||| ||||| || || || | || |||||||| || | Sbjct: 32372982 gatagtttcctgcttctgaagttgtgaatgcgaactgaccaaccgtagcattttcattgt 32373041 Query: 590 gatgtacagtattgccatatggtgaggtaacct 622 |||||| || || ||||||||||| ||||||| Sbjct: 32373042 gatgtaaggtgttcccatatggtgatgtaacct 32373074 Score = 65.9 bits (33), Expect = 2e-07 Identities = 117/145 (80%) Strand = Plus / Plus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||||||||| | ||||| | ||||| || |||| || |||| Sbjct: 32372145 agatgagcttcttcttctggaagtacccttgaaggtgccacaattgcaaaattgaaacca 32372204 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 | | ||| |||| |||||||| || |||||||| || ||||||| ||||||||||||| Sbjct: 32372205 caatgcagacgcttagtgacaaaatactgaaccaggctaccctagcgtttgttttctcgc 32372264 Query: 311 tcacttcccgcatctccgcttccct 335 ||||| |||||||| |||||||| Sbjct: 32372265 tcactgttcgcatctctgcttccct 32372289 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 619 accttgacggcgacggtggggtgggcggtggcgtgggcctcgt 661 ||||||||||||| ||||||||||| || || ||||| ||||| Sbjct: 32374643 accttgacggcgatggtggggtgggaggaggggtgggactcgt 32374685
>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1767_D02 Length = 139145 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Plus Query: 410 cctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccctatcttcc 469 |||||||||| |||||||| |||| | |||||| ||||||| ||||| || ||||||| Sbjct: 34375 cctcaattttttccttcttagcgataacatcccaatcctttgctgcaattccaatcttcc 34434 Query: 470 aatcaagacttagagatactcctgatcctttctctgcactgtctagccagaagcaagcaa 529 |||||||| | | ||||| |||||| ||||||||||| || |||| ||||||||| |||| Sbjct: 34435 aatcaagattaatagatattcctgaccctttctctgcgctatctatccagaagcatgcaa 34494 Query: 530 ggtagtttccagcttctgcagttgtaaatgcaaattggcccgctgtggcattttctttat 589 | |||||||| ||||||| |||||| ||||| || || || | || |||||||| || | Sbjct: 34495 gatagtttcctgcttctgaagttgtgaatgcgaactgaccaaccgtagcattttcattgt 34554 Query: 590 gatgtacagtattgccatatggtgaggtaacct 622 |||||| || || ||||||||||| ||||||| Sbjct: 34555 gatgtaaggtgttcccatatggtgatgtaacct 34587 Score = 65.9 bits (33), Expect = 2e-07 Identities = 117/145 (80%) Strand = Plus / Plus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||||||||| | ||||| | ||||| || |||| || |||| Sbjct: 33658 agatgagcttcttcttctggaagtacccttgaaggtgccacaattgcaaaattgaaacca 33717 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 | | ||| |||| |||||||| || |||||||| || ||||||| ||||||||||||| Sbjct: 33718 caatgcagacgcttagtgacaaaatactgaaccaggctaccctagcgtttgttttctcgc 33777 Query: 311 tcacttcccgcatctccgcttccct 335 ||||| |||||||| |||||||| Sbjct: 33778 tcactgttcgcatctctgcttccct 33802 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Plus Query: 619 accttgacggcgacggtggggtgggcggtggcgtgggcctcgt 661 ||||||||||||| ||||||||||| || || ||||| ||||| Sbjct: 36156 accttgacggcgatggtggggtgggaggaggggtgggactcgt 36198
>dbj|AK103111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119C19, full insert sequence Length = 1525 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 410 cctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccctatcttcc 469 |||||||||| |||||||| |||| | |||||| ||||||| ||||| || ||||||| Sbjct: 974 cctcaattttttccttcttagcgataacatcccaatcctttgctgcaattccaatcttcc 915 Query: 470 aatcaagacttagagatactcctgatcctttctctgcactgtctagccagaagcaagcaa 529 |||||||| | | ||||| |||||| ||||||||||| || |||| ||||||||| |||| Sbjct: 914 aatcaagattaatagatattcctgaccctttctctgcgctatctatccagaagcatgcaa 855 Query: 530 ggtagtttccagcttctgcagttgtaaatgcaaattggcccgctgtggcattttctttat 589 | |||||||| ||||||| |||||| ||||| || || || | || |||||||| || | Sbjct: 854 gatagtttcctgcttctgaagttgtgaatgcgaactgaccaaccgtagcattttcattgt 795 Query: 590 gatgtacagtattgccatatggtgaggtaacct 622 |||||| || || ||||||||||| ||||||| Sbjct: 794 gatgtaaggtgttcccatatggtgatgtaacct 762 Score = 85.7 bits (43), Expect = 2e-13 Identities = 160/199 (80%) Strand = Plus / Minus Query: 191 agatgagcttcttcttctggaagaagccttgcaaatgccataactgcagggcggagacca 250 ||||||||||||||||||||||| | ||||| | ||||| || |||| || |||| Sbjct: 1301 agatgagcttcttcttctggaagtacccttgaaggtgccacaattgcaaaattgaaacca 1242 Query: 251 cgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttctcgc 310 | | ||| |||| |||||||| || |||||||| || ||||||| ||||||||||||| Sbjct: 1241 caatgcagacgcttagtgacaaaatactgaaccaggctaccctagcgtttgttttctcgc 1182 Query: 311 tcacttcccgcatctccgcttcccttgctttcaaatataataagttgtgatgaatggatt 370 ||||| |||||||| |||||||||||||| | ||||| | ||| ||||| ||||||| Sbjct: 1181 tcactgttcgcatctctgcttcccttgctttgagatatatcatgttctgatggatggatt 1122 Query: 371 ccactgcagcttcaagttt 389 ||||| |||||||||| Sbjct: 1121 gtactgccacttcaagttt 1103
>gb|AY111560.1| Zea mays CL15300_1 mRNA sequence Length = 639 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 518 agaagcaagcaaggtagtttccagcttctgcagttgtaaatgcaaattg 566 ||||||| ||||||||||| || |||||||| || |||||||||||||| Sbjct: 470 agaagcaggcaaggtagttccctgcttctgctgtggtaaatgcaaattg 518
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 518 agaagcaagcaaggtagtttccagcttctgcagttgtaaatgcaaattggcc 569 |||||||||| | ||||||||| |||||||||||||| |||| ||| ||||| Sbjct: 16944186 agaagcaagccaagtagtttcctgcttctgcagttgtgaatgaaaactggcc 16944135
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 518 agaagcaagcaaggtagtttccagcttctgcagttgtaaatgcaaattggcc 569 |||||||||| | ||||||||| |||||||||||||| |||| ||| ||||| Sbjct: 73999 agaagcaagccaagtagtttcctgcttctgcagttgtgaatgaaaactggcc 73948
>ref|NM_102038.3| Arabidopsis thaliana protein carrier AT1G21900 mRNA, complete cds Length = 1000 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 247 accacgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttc 306 ||||| ||||| || || ||||||| || ||||||||||| || || || || ||| | Sbjct: 647 accacaacgcaaaccccgagtgacattatactgaaccaagccactcttgagttggttgtt 588 Query: 307 tcgctcacttcccgcatctccgcttccct 335 || |||||||| ||||||||||||||||| Sbjct: 587 tcactcacttctcgcatctccgcttccct 559 Score = 42.1 bits (21), Expect = 2.3 Identities = 60/73 (82%) Strand = Plus / Minus Query: 403 tcaacaccctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccct 462 ||||||||||| || || ||||| || || ||||| |||||||| || | ||||| || Sbjct: 491 tcaacaccctcgatcttttcctttttagcaacagagtcccagtctttagctgcaataccc 432 Query: 463 atcttccaatcaa 475 ||||||||||||| Sbjct: 431 atcttccaatcaa 419
>gb|AY114612.1| Arabidopsis thaliana transmembrane protein-like protein (At1g21900) mRNA, complete cds Length = 711 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 247 accacgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttc 306 ||||| ||||| || || ||||||| || ||||||||||| || || || || ||| | Sbjct: 593 accacaacgcaaaccccgagtgacattatactgaaccaagccactcttgagttggttgtt 534 Query: 307 tcgctcacttcccgcatctccgcttccct 335 || |||||||| ||||||||||||||||| Sbjct: 533 tcactcacttctcgcatctccgcttccct 505 Score = 42.1 bits (21), Expect = 2.3 Identities = 60/73 (82%) Strand = Plus / Minus Query: 403 tcaacaccctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccct 462 ||||||||||| || || ||||| || || ||||| |||||||| || | ||||| || Sbjct: 437 tcaacaccctcgatcttttcctttttagcaacagagtcccagtctttagctgcaataccc 378 Query: 463 atcttccaatcaa 475 ||||||||||||| Sbjct: 377 atcttccaatcaa 365
>gb|AY092996.1| Arabidopsis thaliana similar to transmembrane protein (At1g21900) mRNA, complete cds Length = 991 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 247 accacgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttc 306 ||||| ||||| || || ||||||| || ||||||||||| || || || || ||| | Sbjct: 647 accacaacgcaaaccccgagtgacattatactgaaccaagccactcttgagttggttgtt 588 Query: 307 tcgctcacttcccgcatctccgcttccct 335 || |||||||| ||||||||||||||||| Sbjct: 587 tcactcacttctcgcatctccgcttccct 559 Score = 42.1 bits (21), Expect = 2.3 Identities = 60/73 (82%) Strand = Plus / Minus Query: 403 tcaacaccctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccct 462 ||||||||||| || || ||||| || || ||||| |||||||| || | ||||| || Sbjct: 491 tcaacaccctcgatcttttcctttttagcaacagagtcccagtctttagctgcaataccc 432 Query: 463 atcttccaatcaa 475 ||||||||||||| Sbjct: 431 atcttccaatcaa 419
>emb|BX816883.1|CNS0AEHA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZB11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 897 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 247 accacgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttc 306 ||||| ||||| || || ||||||| || ||||||||||| || || || || ||| | Sbjct: 570 accacaacgcaaaccccgagtgacattatactgaaccaagccactcttgagttggttgtt 511 Query: 307 tcgctcacttcccgcatctccgcttccct 335 || |||||||| ||||||||||||||||| Sbjct: 510 tcactcacttctcgcatctccgcttccct 482 Score = 42.1 bits (21), Expect = 2.3 Identities = 60/73 (82%) Strand = Plus / Minus Query: 403 tcaacaccctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccct 462 ||||||||||| || || ||||| || || ||||| |||||||| || | ||||| || Sbjct: 414 tcaacaccctcgatcttttcctttttagcaacagagtcccagtctttagctgcaataccc 355 Query: 463 atcttccaatcaa 475 ||||||||||||| Sbjct: 354 atcttccaatcaa 342
>gb|AC013482.2|AC013482 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence Length = 82875 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Plus Query: 247 accacgacgcacacgcccagtgacaagatgctgaaccaagcaaccctagaatttgttttc 306 ||||| ||||| || || ||||||| || ||||||||||| || || || || ||| | Sbjct: 37006 accacaacgcaaaccccgagtgacattatactgaaccaagccactcttgagttggttgtt 37065 Query: 307 tcgctcacttcccgcatctccgcttccct 335 || |||||||| ||||||||||||||||| Sbjct: 37066 tcactcacttctcgcatctccgcttccct 37094
>gb|AC155889.2| Medicago truncatula chromosome 2 BAC clone mth2-31j12, complete sequence Length = 122733 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 196 agcttcttcttctggaagaagccttgcaaatgccataactgca 238 |||||||||||||||||| | | || ||||||||| ||||||| Sbjct: 68939 agcttcttcttctggaagtatcttttcaaatgccacaactgca 68897
>gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24, complete sequence Length = 97697 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 189 tcagatgagcttcttcttctggaagaa 215 ||||||||| ||||||||||||||||| Sbjct: 49639 tcagatgagtttcttcttctggaagaa 49665
>gb|AC099726.6| Mus musculus chromosome 7, clone RP23-342H24, complete sequence Length = 217218 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 521 agcaagcaaggtagtttccagc 542 |||||||||||||||||||||| Sbjct: 105504 agcaagcaaggtagtttccagc 105483
>gb|AY389600.1| Hyacinthus orientalis emp24 protein mRNA, partial cds Length = 743 Score = 44.1 bits (22), Expect = 0.58 Identities = 52/62 (83%) Strand = Plus / Minus Query: 409 ccctcaattttctccttcttggcgacagaatcccagtcctttgtcgcaatccctatcttc 468 ||||| || ||||| || || |||||||||||||||||||| | ||||| || |||||| Sbjct: 485 ccctcgatcttctctttttttgcgacagaatcccagtccttcgcagcaattccaatcttc 426 Query: 469 ca 470 || Sbjct: 425 ca 424 Score = 44.1 bits (22), Expect = 0.58 Identities = 31/34 (91%) Strand = Plus / Minus Query: 604 ccatatggtgaggtaaccttgacggcgacggtgg 637 ||||||||||| || ||||||||||||| ||||| Sbjct: 290 ccatatggtgacgtcaccttgacggcgatggtgg 257
>gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosome 7, complete sequence Length = 168580 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 521 agcaagcaaggtagtttccagc 542 |||||||||||||||||||||| Sbjct: 23318 agcaagcaaggtagtttccagc 23297
>gb|AE017159.1| Chlamydophila pneumoniae TW-183, section 3 of 4 of the complete genome Length = 300066 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 572 ctgtggcattttctttatgatgtaca 597 ||||||||||||||| |||||||||| Sbjct: 217323 ctgtggcattttcttaatgatgtaca 217298
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 572 ctgtggcattttctttatgatgtaca 597 ||||||||||||||| |||||||||| Sbjct: 20386 ctgtggcattttcttaatgatgtaca 20411
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 539 cagcttctgcagttgtaaatgc 560 |||||||||||||||||||||| Sbjct: 24559102 cagcttctgcagttgtaaatgc 24559081
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 572 ctgtggcattttctttatgatgtaca 597 ||||||||||||||| |||||||||| Sbjct: 821199 ctgtggcattttcttaatgatgtaca 821174
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 572 ctgtggcattttctttatgatgtaca 597 ||||||||||||||| |||||||||| Sbjct: 820520 ctgtggcattttcttaatgatgtaca 820495
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 539 cagcttctgcagttgtaaatgc 560 |||||||||||||||||||||| Sbjct: 139486 cagcttctgcagttgtaaatgc 139465
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Plus Query: 627 ggcgacggtggggtgggcggtggcgtgggc 656 ||||||||||||| |||||||||| ||||| Sbjct: 1273585 ggcgacggtggggggggcggtggcatgggc 1273614
>gb|AC150414.2| Branchiostoma floridae clone CH302-62C22, complete sequence Length = 210179 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ttaacaacaaaggagtacatg 173 ||||||||||||||||||||| Sbjct: 113048 ttaacaacaaaggagtacatg 113028
>ref|XM_475159.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1536 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 627 ggcgacggtggggtgggcggtggcg 651 |||| |||||||||||||||||||| Sbjct: 33 ggcggcggtggggtgggcggtggcg 57
>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12, complete sequence Length = 121293 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 627 ggcgacggtggggtgggcggtggcg 651 |||| |||||||||||||||||||| Sbjct: 67640 ggcggcggtggggtgggcggtggcg 67616
>emb|AL357033.19| Human DNA sequence from clone RP11-93B14 on chromosome 20 Contains the SLC21A12 gene for solute carrier family 21 (organic anion transporter) member 12, the 5' end of the NTSR1 gene encoding the high affinity neurotensin receptor 1, three novel genes, the gene for a novel protein (FLJ32154) and four CpG islands, complete sequence Length = 114642 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 ggtggggtgggcggtggcgtg 653 ||||||||||||||||||||| Sbjct: 18498 ggtggggtgggcggtggcgtg 18478
>gb|DQ116392.1| Oryza sativa (japonica cultivar-group) hexokinase 10 (HXK10) mRNA, complete cds Length = 1585 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 627 ggcgacggtggggtgggcggtggcg 651 |||| |||||||||||||||||||| Sbjct: 91 ggcggcggtggggtgggcggtggcg 115
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 627 ggcgacggtggggtgggcggtggcg 651 |||| |||||||||||||||||||| Sbjct: 17936891 ggcggcggtggggtgggcggtggcg 17936867
>gb|AF216532.1|AF216532 Drosophila melanogaster combgap mRNA, complete cds Length = 3112 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 ttcttctggaagaagccttgc 222 ||||||||||||||||||||| Sbjct: 2726 ttcttctggaagaagccttgc 2706
>gb|AC007563.2| Homo sapiens BAC clone RP11-506C8 from 2, complete sequence Length = 179859 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 ctccgcttcccttgctttcaa 344 ||||||||||||||||||||| Sbjct: 49565 ctccgcttcccttgctttcaa 49545
>gb|AY884170.1| Oryza sativa (japonica cultivar-group) hexokinase 7 (HXK7) mRNA, complete cds Length = 1632 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 627 ggcgacggtggggtgggcggtggcg 651 |||| |||||||||||||||||||| Sbjct: 137 ggcggcggtggggtgggcggtggcg 161
>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0502B12 Length = 197160 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 624 gacggcgacggtggggtgggcggtg 648 |||||||||||||| |||||||||| Sbjct: 32254 gacggcgacggtggtgtgggcggtg 32278
>ref|NM_100830.3| Arabidopsis thaliana protein carrier AT1G09580 mRNA, complete cds Length = 908 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 gttgtaaatgcaaattggcc 569 |||||||||||||||||||| Sbjct: 347 gttgtaaatgcaaattggcc 328
>gb|AC162614.2| Mus musculus chromosome 7, clone RP23-421O10, complete sequence Length = 219414 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 caaatataataagttgtgat 361 |||||||||||||||||||| Sbjct: 171150 caaatataataagttgtgat 171131
>gb|AE010154.1| Pyrococcus furiosus DSM 3638, section 29 of 173 of the complete genome Length = 14227 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 aacaaaggagtacatggcga 177 |||||||||||||||||||| Sbjct: 7967 aacaaaggagtacatggcga 7986
>ref|XM_953476.1| Neurospora crassa OR74A hypothetical protein (NCU05955.1) partial mRNA Length = 2586 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 cggcgacggtggggtgggcg 645 |||||||||||||||||||| Sbjct: 1888 cggcgacggtggggtgggcg 1869
>ref|XM_325809.1| Neurospora crassa OR74A hypothetical protein (NCU05955.1) partial mRNA Length = 2586 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 cggcgacggtggggtgggcg 645 |||||||||||||||||||| Sbjct: 1888 cggcgacggtggggtgggcg 1869
>emb|BX511116.4| Zebrafish DNA sequence from clone CH211-164D19 in linkage group 1, complete sequence Length = 52397 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tgcagttgtaaatgcaaatt 565 |||||||||||||||||||| Sbjct: 46342 tgcagttgtaaatgcaaatt 46323
>emb|CR974455.5| Mouse DNA sequence from clone RP24-65D22 on chromosome 2, complete sequence Length = 193651 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 ttttctttatgatgtacagt 599 |||||||||||||||||||| Sbjct: 126693 ttttctttatgatgtacagt 126712
>emb|CR352287.12| Zebrafish DNA sequence from clone DKEY-158P1 in linkage group 24, complete sequence Length = 153729 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 atgagcttcttcttctggaagaag 216 ||||||||||||||| |||||||| Sbjct: 119618 atgagcttcttcttcaggaagaag 119595
>gb|BT010830.1| Arabidopsis thaliana At1g09580 mRNA, complete cds Length = 777 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 gttgtaaatgcaaattggcc 569 |||||||||||||||||||| Sbjct: 328 gttgtaaatgcaaattggcc 309
>gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains phyA marker, complete sequence Length = 95865 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 gttgtaaatgcaaattggcc 569 |||||||||||||||||||| Sbjct: 87158 gttgtaaatgcaaattggcc 87139
>ref|XM_806713.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508601.70) partial mRNA Length = 1440 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 caacaaaggagtacatggcgaagc 180 |||| ||||||||||||||||||| Sbjct: 1295 caaccaaggagtacatggcgaagc 1318
>gb|DQ372711.1| Azoarcus communis strain MUL2G9 hypothetical proteins, phosphoribosylglycinamide formyltransferase, hypothetical protein, sigma-54 dependent transcriptional activator, acyl-CoA synthetase, acetone carboxylase gamma subunit, acetone carboxylase alpha subunit, acetone carboxylase beta subunit, catalase/peroxidase, putative SAM-dependent methyltransferase, putative Fe-S oxidoreductase, putative acyl dehydratase, hypothetical proteins, putative endonuclease, hypothetical protein, and putative integrase/recombinase genes, complete cds; class 1 integron, complete sequence; putative transposase and DNA gyrase subunit B genes, complete cds; and DNA polymerase subunit B gene, partial cds Length = 36164 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 ggtggggtgggcggtggcgt 652 |||||||||||||||||||| Sbjct: 35673 ggtggggtgggcggtggcgt 35692
>gb|AC117600.9| Mus musculus chromosome 1, clone RP23-449C20, complete sequence Length = 195848 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aaccaccaagaaactgcttcctat 60 ||||||||||||||||||| |||| Sbjct: 87155 aaccaccaagaaactgctttctat 87132
>gb|AY358785.1| Homo sapiens clone DNA98380 TCPD2512 (UNQ2512) mRNA, complete cds Length = 2915 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 1721 agtttccagcttctgcagtt 1740
>gb|BC043193.2| Homo sapiens chromosome 4 open reading frame 18, transcript variant 1, mRNA (cDNA clone MGC:44228 IMAGE:5288748), complete cds Length = 4591 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 1783 agtttccagcttctgcagtt 1802
>gb|BC100016.1| Homo sapiens chromosome 4 open reading frame 18, mRNA (cDNA clone IMAGE:5260703), partial cds Length = 3453 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 643 agtttccagcttctgcagtt 662
>gb|BC017701.1| Homo sapiens chromosome 4 open reading frame 18, mRNA (cDNA clone IMAGE:4399420), complete cds Length = 3757 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 707 agtttccagcttctgcagtt 726
>emb|AL391219.12| Human DNA sequence from clone RP11-118F2 on chromosome 9 Contains the 5' end of the ROR2 gene for receptor tyrosine kinase-like orphan receptor 2, a ribosomal protein L21 (RPL21) pseudogene, a heat shock 10kDa protein 1 (chaperonin 10) (HSPE1) pseudogene, the 3' end of the SPTLC1 gene for serine palmitoyltransferase long chain base subunit 1 and a CpG island, complete sequence Length = 144900 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ctcaattttctccttcttgg 430 |||||||||||||||||||| Sbjct: 21539 ctcaattttctccttcttgg 21520
>emb|AL109941.17|HSJ435K13 Human DNA sequence from clone RP3-435K13 on chromosome 6q14.1-16.1 Contains a novel pseudogene, complete sequence Length = 151301 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 cttctggaagaagccttgcaaatgccat 231 |||||||||||| |||||||||| |||| Sbjct: 98182 cttctggaagaatccttgcaaataccat 98209
>emb|AL035668.15|HS859D4 Human DNA sequence from clone RP5-859D4 on chromosome 20p12.1-13 Contains the BMP2 gene for bone morphogenetic protein 2, a novel gene and a CpG island, complete sequence Length = 173308 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cagatgagcttcttcttctg 209 |||||||||||||||||||| Sbjct: 112822 cagatgagcttcttcttctg 112841
>emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chromosome 11 Contains a novel gene, complete sequence Length = 189495 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 gccagaagcaagcaaggtag 534 |||||||||||||||||||| Sbjct: 130416 gccagaagcaagcaaggtag 130397
>gb|AC018361.15| Homo sapiens 3 BAC RP11-41O13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146511 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 agaagccttgcaaatgccataact 235 |||||||| ||||||||||||||| Sbjct: 54464 agaagcctggcaaatgccataact 54487
>gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete sequence Length = 116075 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 agcttcttcttctggaagaa 215 |||||||||||||||||||| Sbjct: 97164 agcttcttcttctggaagaa 97183
>ref|NM_001031700.1| Homo sapiens chromosome 4 open reading frame 18 (C4orf18), transcript variant 1, mRNA Length = 4591 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 1783 agtttccagcttctgcagtt 1802
>ref|NM_016613.4| Homo sapiens chromosome 4 open reading frame 18 (C4orf18), transcript variant 2, mRNA Length = 4652 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 1630 agtttccagcttctgcagtt 1649
>emb|CR457196.1| Homo sapiens full open reading frame cDNA clone RZPDo834F058D for gene DKFZp434L142, hypothetical protein DKFZp434L142; complete cds, incl. stopcodon Length = 741 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 533 agtttccagcttctgcagtt 552
>gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, complete sequence Length = 227950 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gtggttaacaacaaaggagt 168 |||||||||||||||||||| Sbjct: 20328 gtggttaacaacaaaggagt 20309
>emb|BX817333.1|CNS0ADYA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL15ZH10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 881 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 gttgtaaatgcaaattggcc 569 |||||||||||||||||||| Sbjct: 347 gttgtaaatgcaaattggcc 328
>gb|AC104326.20| Mus musculus strain C57BL/6J chromosome 2 clone rp23-20g17, complete sequence Length = 232241 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 ttttctttatgatgtacagt 599 |||||||||||||||||||| Sbjct: 163276 ttttctttatgatgtacagt 163295
>gb|AC074264.3| Homo sapiens BAC clone RP11-410L9 from 2, complete sequence Length = 122472 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 636 ggggtgggcggtggcgtggg 655 |||||||||||||||||||| Sbjct: 15468 ggggtgggcggtggcgtggg 15449
>emb|AL928868.5| Mouse DNA sequence from clone RP23-428O15 on chromosome 2, complete sequence Length = 146169 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 ttttctttatgatgtacagt 599 |||||||||||||||||||| Sbjct: 33791 ttttctttatgatgtacagt 33810
>gb|AF223468.1|AF223468 Homo sapiens AD021 protein (AD021) mRNA, complete cds Length = 1357 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 746 agtttccagcttctgcagtt 765
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 cgacggtggggtgggcggtg 648 |||||||||||||||||||| Sbjct: 3948384 cgacggtggggtgggcggtg 3948403
>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence Length = 237824 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gtggttaacaacaaaggagt 168 |||||||||||||||||||| Sbjct: 103230 gtggttaacaacaaaggagt 103211
>emb|AL834177.1|HSM805466 Homo sapiens mRNA; cDNA DKFZp434L142 (from clone DKFZp434L142) Length = 4297 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 1255 agtttccagcttctgcagtt 1274
>emb|AL832589.1|HSM803898 Homo sapiens mRNA; cDNA DKFZp451L1216 (from clone DKFZp451L1216) Length = 4652 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 agtttccagcttctgcagtt 552 |||||||||||||||||||| Sbjct: 1630 agtttccagcttctgcagtt 1649 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,557,914 Number of Sequences: 3902068 Number of extensions: 7557914 Number of successful extensions: 132948 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132501 Number of HSP's gapped (non-prelim): 439 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)