>FDFT_NICBE (P53800) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 411

 Score =  166 bits (421), Expect = 5e-41
 Identities = 76/116 (65%), Positives = 98/116 (84%)
 Frame = -3

Query: 692 TNALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTAR 513
           TNAL H  DCL YMSAL+D S FRFCAIPQ+MAIGT A+CY+N++VFRGVVKMRRGLTA+
Sbjct: 261 TNALPHVEDCLTYMSALRDPSIFRFCAIPQVMAIGTLAMCYDNIEVFRGVVKMRRGLTAK 320

Query: 512 IIDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIKKTCKSSGLLKRR 345
           +ID T++I+DVY AF++FS +L+SK+++NDPNA  T KR++ I KTC+ SG L +R
Sbjct: 321 VIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRLEVILKTCRDSGTLNKR 376

>FDFT_ARATH (P53799) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 410

 Score =  164 bits (414), Expect = 3e-40
 Identities = 73/116 (62%), Positives = 99/116 (85%)
 Frame = -3

Query: 692 TNALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTAR 513
           TNAL+H  DCL+YM +L+D S FRFCAIPQIMAIGT A+CYNN +VFRGVVK+RRGLTA+
Sbjct: 263 TNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGTLALCYNNEQVFRGVVKLRRGLTAK 322

Query: 512 IIDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIKKTCKSSGLLKRR 345
           +ID TK+++DVY AFY+FS +L++K+D NDPNA+ T  R++A++K C+ +G+L+ R
Sbjct: 323 VIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKTLNRLEAVQKLCRDAGVLQNR 378

>FDFT_CANAL (P78589) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 448

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 47/107 (43%), Positives = 66/107 (61%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL H  DCL Y+S +KD S+F FCAIPQ+MA+ T A  YNN KV  GVVK+R+G T R+
Sbjct: 276 NALGHVTDCLDYLSLVKDPSSFSFCAIPQVMAVATLAEVYNNPKVLHGVVKIRKGTTCRL 335

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIKKTCK 369
           I E++++  V   F E+  ++  K    DPN      +   I++ C+
Sbjct: 336 ILESRTLPGVVKIFKEYIQVINHKSSVRDPNYLKIGIKCGEIEQYCE 382

>FDFT_HUMAN (P37268) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 417

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 42/104 (40%), Positives = 68/104 (65%)
 Frame = -3

Query: 692 TNALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTAR 513
           TNAL H  D + Y+S L++ S F FCAIPQ+MAI T A CYNN +VF+G VK+R+G    
Sbjct: 264 TNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVT 323

Query: 512 IIDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIK 381
           ++ +  ++  V +  Y++   +  +I D+DP+++ TR+ +  I+
Sbjct: 324 LMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIR 367

>FDFT_MOUSE (P53798) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 416

 Score = 89.4 bits (220), Expect = 1e-17
 Identities = 41/104 (39%), Positives = 68/104 (65%)
 Frame = -3

Query: 692 TNALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTAR 513
           TN L H  D L Y+S L++ S F FCAIPQ+MAI T A CYNN +VF+GVVK+R+G    
Sbjct: 264 TNTLQHIPDVLTYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVT 323

Query: 512 IIDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIK 381
           ++ +  ++  V +  Y++   +  +I ++DP+++ T++ +  I+
Sbjct: 324 LMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTKQVISKIR 367

>FDFT_RAT (Q02769) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 416

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 43/119 (36%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
 Frame = -3

Query: 692 TNALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTAR 513
           TNAL H  D + Y+S L++ S F FCAIPQ+MAI T A CYNN +VF+GVVK+R+G    
Sbjct: 264 TNALQHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNHQVFKGVVKIRKGQAVT 323

Query: 512 IIDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIK-KTCKSSGLLKRRGY 339
           ++ +  ++  V +  Y++   +  ++ ++DP+A+  ++ +  I+ ++  +  L+ R  Y
Sbjct: 324 LMMDATNMPAVKAIIYQYIEEIYHRVPNSDPSASKAKQLISNIRTQSLPNCQLISRSHY 382

>FDFT_YARLI (Q9Y753) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 445

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 42/91 (46%), Positives = 55/91 (60%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL HA DCL Y+  + D S F FCAIPQ+MAI T  + Y N  VF+  VK+R+G T  +
Sbjct: 272 NALGHATDCLDYLDNVTDPSTFTFCAIPQVMAIATLDLVYRNPDVFQKNVKLRKGTTVSL 331

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPN 417
           I E  ++S V   F  ++  +  K D NDPN
Sbjct: 332 ILEASNVSGVCDIFTRYARKVYKKSDPNDPN 362

>FDFT_YEAST (P29704) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 444

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 36/91 (39%), Positives = 57/91 (62%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL H  D L Y++ + + S F+FCAIPQ+MAI T A+ +NN +V  G VK+R+G T  +
Sbjct: 272 NALSHVIDVLTYLAGIHEQSTFQFCAIPQVMAIATLALVFNNREVLHGNVKIRKGTTCYL 331

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPN 417
           I +++++      F  +   ++SK+   DPN
Sbjct: 332 ILKSRTLRGCVEIFDYYLRDIKSKLAVQDPN 362

>FDFT_USTMA (Q92459) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 572

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 37/108 (34%), Positives = 61/108 (56%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           +A+ HA   L Y++ LK+ S F FCAIPQ+MAI T  + +NN  VF+  VK+R+G+   +
Sbjct: 297 DAMSHATHALDYLALLKEQSVFNFCAIPQVMAIATLELMFNNPDVFKKNVKIRKGVAVGL 356

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIKKTCKS 366
           I    +  DV   F  +S  + +++   DPN       +  I++ C++
Sbjct: 357 ILRAVNPRDVAYTFLHYSRKMHARLSPADPNFTRWSVELARIEQWCET 404

>FDFT_CANGA (Q9HGZ6) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 443

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 35/91 (38%), Positives = 56/91 (61%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL H  D L Y+S++ + S+F+FCAIPQ+MAI T A  +NN +V R  VK+R+G T  +
Sbjct: 275 NALTHVIDVLTYLSSIHEQSSFQFCAIPQVMAIATLAKVFNNPEVLRKNVKIRKGTTCDL 334

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPN 417
           I  ++++      F  +   ++ ++   DPN
Sbjct: 335 ILNSRTLKGCVDIFQYYLRDMKQRLPVEDPN 365

>FDFT_SCHPO (P36596) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 460

 Score = 73.2 bits (178), Expect = 7e-13
 Identities = 44/124 (35%), Positives = 64/124 (51%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL HA D L Y+S LK    F FCAIPQ+MAI T A  + N  VF+  VK+R+G   +I
Sbjct: 269 NALTHATDALVYLSQLKTQEIFNFCAIPQVMAIATLAAVFRNPDVFQTNVKIRKGQAVQI 328

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPNAALTRKRVDAIKKTCKSSGLLKRRGYDLE 330
           I  + ++ +V   F  ++  +  K    DPN    +  ++  K    S  L  RR  ++ 
Sbjct: 329 ILHSVNLKNVCDLFLRYTRDIHYKNTPKDPN--FLKISIECGKIEQVSESLFPRRFREMY 386

Query: 329 KSKY 318
           +  Y
Sbjct: 387 EKAY 390

>FDFT_PICJA (O74165) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 443

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 33/91 (36%), Positives = 54/91 (59%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL H  D LQY++ +++ ++F FCAIPQ+MAI T  + + N +V    VK+R+G T  +
Sbjct: 272 NALDHVIDVLQYLALVEEQTSFNFCAIPQVMAIATLELVFQNPQVLTQHVKIRKGTTVSL 331

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPN 417
           I E++++      F  +   +  K   +DPN
Sbjct: 332 ILESRTLEGCARIFRRYLRKIHHKSHPSDPN 362

>FDFT_ASHGO (Q752X9) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 441

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 32/91 (35%), Positives = 55/91 (60%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL H    L Y+++L++ S+F+FCAIPQ+MAI T A+ + N +V +  VK+R+G T  +
Sbjct: 273 NALGHVQHVLTYLASLREQSSFQFCAIPQVMAIATLALVFGNERVLQTSVKIRKGTTCYL 332

Query: 509 IDETKSISDVYSAFYEFSSLLESKIDDNDPN 417
           I ++++       F  +   +  ++   DPN
Sbjct: 333 ILKSRTFQGCVEIFEHYLRDIRKRLTVADPN 363

>FDFT_NEUCR (Q7S4Z6) Probable squalene synthetase (EC 2.5.1.21) (SQS) (SS)|
           (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP
           farnesyltransferase)
          Length = 481

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
 Frame = -3

Query: 689 NALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYNNVKVFRGVVKMRRGLTARI 510
           NAL H  DCL YM+ ++D S F F AIPQ MAI T  + + N  +F   VK+ +G   ++
Sbjct: 275 NALKHTEDCLFYMAGMRDQSVFNFVAIPQAMAIATLELVFRNPAIFERNVKITKGDACQL 334

Query: 509 -IDETKSISDVYSAFYEFSSLLESKIDDNDPN 417
            ++ T+++  V   F  ++  +  K D  DPN
Sbjct: 335 MMESTQNLRVVCEVFRRYARRIHKKNDPRDPN 366

>TATD_ECOLI (P27859) Deoxyribonuclease tatD (EC 3.1.21.-) (DNase tatD)|
          Length = 260

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -3

Query: 692 TNALIHAHDCLQYMSALKDNSNFRFCAIPQIMAIGTCAICYN 567
           + A +H HD  Q+ +A ++ +     A P+++AIG C + +N
Sbjct: 57  STAGVHPHDSSQWQAATEE-AIIELAAQPEVVAIGECGLDFN 97

>SYC_SYNY3 (P74330) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 483

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +3

Query: 117 TSRVHSTILHANQP----YPSAVRRYTCKTI*ARRCHEEHKRTMLTGSLAIQHAQ 269
           T R++ ++  A QP    +P  V  Y C       CH  H RT +T  L  ++ Q
Sbjct: 2   TLRLYDSLTRAKQPLQPLHPGLVTMYCCGITVYDYCHLGHARTCITWDLVRRYLQ 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,692,877
Number of Sequences: 219361
Number of extensions: 2155322
Number of successful extensions: 6380
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6354
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)