ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470007.1| Oryza sativa (japonica cultivar-group), mRNA 377 e-101
2dbj|AB007501.1| Oryza sativa (japonica cultivar-group) mRNA for ... 377 e-101
3dbj|AB007502.1| Zea mays mRNA for squalene synthase, complete cds 264 4e-67
4gb|AY104947.1| Zea mays PCO094214 mRNA sequence 246 8e-62
5ref|XM_477025.1| Oryza sativa (japonica cultivar-group), mRNA 145 2e-31
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 145 2e-31
7gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 145 2e-31
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
9dbj|AK063341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
11dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
12gb|AY230869.1| Phragmites australis clone PaGT9 microsatellite s... 60 1e-05
13dbj|AB007503.1| Glycine max mRNA for squalene synthase, complete... 52 0.002
14emb|AJ430610.1|MTR430610 Medicago truncatula mRNA for farnesyl-d... 50 0.010
15gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 44 0.61
16dbj|AB102688.1| Lotus japonicus LjSqS mRNA for squalene synthase... 44 0.61
17dbj|D86410.1| Glycyrrhiza glabra mRNA for squalene synthase, com... 44 0.61
18emb|AJ238762.1|RHE238762 Rickettsia helvetica ftsY (partial), po... 42 2.4
19emb|CR392004.12| Zebrafish DNA sequence from clone CH211-165H11 ... 42 2.4
20emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 i... 42 2.4
21ref|NM_183424.1| Mus musculus P518 precursor protein (P518), mRNA 40 9.5
22gb|AC112942.11| Mus musculus chromosome 7, clone RP23-449N21, co... 40 9.5
23gb|AC135637.5| Mus musculus BAC clone RP23-298I23 from chromosom... 40 9.5
24gb|AY445506.1| Artemisia annua squalene synthase mRNA, complete cds 40 9.5
25gb|AC132329.4| Mus musculus BAC clone RP24-206F15 from chromosom... 40 9.5
26gb|AC122476.4| Mus musculus BAC clone RP24-334L2 from chromosome... 40 9.5
27gb|AC122826.4| Mus musculus BAC clone RP23-209L3 from chromosome... 40 9.5
28emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 ... 40 9.5
29gb|U53181.1| Caenorhabditis elegans cosmid F36D4, complete sequence 40 9.5
30gb|AC183690.3| Cavia porcellus clone CH234-212D11, complete sequ... 40 9.5
31gb|AC156941.3| Mus musculus BAC clone RP23-25D8 from chromosome ... 40 9.5
32emb|AL451064.6| Human DNA sequence from clone RP11-177G23 on chr... 40 9.5
33emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chr... 40 9.5
34gb|AC158128.3| Mus musculus chromosome 15, clone RP24-310D6, com... 40 9.5
35gb|BC033349.1| Homo sapiens ubiquitin-conjugating enzyme E2D 2 (... 40 9.5
36gb|AC097633.2| Homo sapiens chromosome 3 clone RP11-96F15, compl... 40 9.5
37gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, comp... 40 9.5
38dbj|AK093863.1| Homo sapiens cDNA FLJ36544 fis, clone TRACH2006378 40 9.5
39dbj|AK024294.1| Homo sapiens cDNA FLJ14232 fis, clone NT2RP4000035 40 9.5
40gb|AC012464.25| Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Ca... 40 9.5
41gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, c... 40 9.5
42gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 ma... 40 9.5
43dbj|AK029144.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 9.5
44gb|AF302464.2|AF302464 Artemisia annua squalene synthase mRNA, c... 40 9.5
45emb|AL806520.36| Mouse DNA sequence from clone RP23-19M23 on chr... 40 9.5
46emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, c... 40 9.5
47emb|AJ970587.1| Candidatus Phytoplasma solani partial gene for P... 40 9.5
48gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, co... 40 9.5
49emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 i... 40 9.5
50gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, com... 40 9.5
51gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 9.5
52gb|AC174763.1| Gasterosteus aculeatus clone VMRC28-119C03, compl... 40 9.5
53emb|CT025617.12| Mouse DNA sequence from clone RP23-442A13 on ch... 40 9.5
54emb|AL929275.8| Mouse DNA sequence from clone RP23-65P13 on chro... 40 9.5
55emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chr... 40 9.5
56gb|AC108138.6| Homo sapiens chromosome 18, clone RP11-235B21, co... 40 9.5
57emb|AL845441.7| Mouse DNA sequence from clone RP23-327I5 on chro... 40 9.5
58emb|AL121653.2|CNS01DS3 BAC sequence from the SPG4 candidate reg... 40 9.5 
>ref|XM_470007.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1880

 Score =  377 bits (190), Expect = e-101
 Identities = 310/350 (88%)
 Strand = Plus / Minus

                                                                        
Query: 319  tacttcgacttctccaggtcgtatccccttctctttagcaacccagatgacttgcaagtt 378
            ||||| ||||||||||  ||||||||||||||||||||  | | |||||||||||| |||
Sbjct: 1434 tactttgacttctccaaatcgtatccccttctctttagtgagcaagatgacttgcaggtt 1375

                                                                        
Query: 379  ttctttattgcatctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatc 438
             ||||||| ||||| ||||| ||||| || || | ||||||||| || |||| |||||||
Sbjct: 1374 ctctttatcgcatcaacacgtttccgcgttagggaagcatttggatcattattatcaatc 1315

                                                                        
Query: 439  ttcgactctagcaatgaagagaactcatagaaagcagaatagacatctgatatcgatttt 498
            ||||| |||| ||  |||||||||||||||||||||| |||||||||||| || |  |||
Sbjct: 1314 ttcgattctatcagcgaagagaactcatagaaagcagtatagacatctgacattgtgttt 1255

                                                                        
Query: 499  gtctcatcaattatccgtgcagtgagcccacgcctcatcttaacaactcctctaaagact 558
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1254 gtctcatcaattactcgtgcagtgagcccacgcctcatcttaacaactcctctaaagaca 1195

                                                                        
Query: 559  ttcacattattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaa 618
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1194 ttcacattattgtagcaaatagcacatgtcccaattgccattatctgaggtattgcacaa 1135

                                                              
Query: 619  aaacgaaaattggaattgtcctttaatgctgacatgtattgaaggcagtc 668
            ||||| ||| ||| ||  ||||| ||||||||||||||||| ||||||||
Sbjct: 1134 aaacggaaaatggcatgatccttcaatgctgacatgtattggaggcagtc 1085
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>dbj|AB007501.1| Oryza sativa (japonica cultivar-group) mRNA for squalene synthase,
            complete cds
          Length = 1875

 Score =  377 bits (190), Expect = e-101
 Identities = 310/350 (88%)
 Strand = Plus / Minus

                                                                        
Query: 319  tacttcgacttctccaggtcgtatccccttctctttagcaacccagatgacttgcaagtt 378
            ||||| ||||||||||  ||||||||||||||||||||  | | |||||||||||| |||
Sbjct: 1429 tactttgacttctccaaatcgtatccccttctctttagtgagcaagatgacttgcaggtt 1370

                                                                        
Query: 379  ttctttattgcatctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatc 438
             ||||||| ||||| ||||| ||||| || || | ||||||||| || |||| |||||||
Sbjct: 1369 ctctttatcgcatcaacacgtttccgcgttagggaagcatttggatcattattatcaatc 1310

                                                                        
Query: 439  ttcgactctagcaatgaagagaactcatagaaagcagaatagacatctgatatcgatttt 498
            ||||| |||| ||  |||||||||||||||||||||| |||||||||||| || |  |||
Sbjct: 1309 ttcgattctatcagcgaagagaactcatagaaagcagtatagacatctgacattgtgttt 1250

                                                                        
Query: 499  gtctcatcaattatccgtgcagtgagcccacgcctcatcttaacaactcctctaaagact 558
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1249 gtctcatcaattactcgtgcagtgagcccacgcctcatcttaacaactcctctaaagaca 1190

                                                                        
Query: 559  ttcacattattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaa 618
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1189 ttcacattattgtagcaaatagcacatgtcccaattgccattatctgaggtattgcacaa 1130

                                                              
Query: 619  aaacgaaaattggaattgtcctttaatgctgacatgtattgaaggcagtc 668
            ||||| ||| ||| ||  ||||| ||||||||||||||||| ||||||||
Sbjct: 1129 aaacggaaaatggcatgatccttcaatgctgacatgtattggaggcagtc 1080
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>dbj|AB007502.1| Zea mays mRNA for squalene synthase, complete cds
          Length = 1911

 Score =  264 bits (133), Expect = 4e-67
 Identities = 289/341 (84%)
 Strand = Plus / Minus

                                                                        
Query: 325  gacttctccaggtcgtatccccttctctttagcaacccagatgacttgcaagttttcttt 384
            ||||||||||  | ||| ||||||  ||||| ||| ||||||||||||||||||| ||||
Sbjct: 1252 gacttctccaaatggtaccccctttgctttaccaaaccagatgacttgcaagtttgcttt 1193

                                                                        
Query: 385  attgcatctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatcttcgac 444
            |||| ||| |||||  || |||| || ||||||||||| ||  | ||||||||||| |||
Sbjct: 1192 attgaatccacacgtctctgtgttagagcagcatttggatcactgtcatcaatctttgac 1133

                                                                        
Query: 445  tctagcaatgaagagaactcatagaaagcagaatagacatctgatatcgattttgtctca 504
            |||| ||||||||| |||||||||||||||| |||||||||||  || || |||||||| 
Sbjct: 1132 tctatcaatgaagaaaactcatagaaagcagtatagacatctgtcattgagtttgtctcg 1073

                                                                        
Query: 505  tcaattatccgtgcagtgagcccacgcctcatcttaacaactcctctaaagactttcaca 564
            |||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||| | ||| 
Sbjct: 1072 tcaattattcgtgccgtgagaccacgtctcatcttcacaactcctctgaagacatgcacg 1013

                                                                        
Query: 565  ttattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaaacga 624
            ||||||||||||| |||||| || ||||||||||||||||| ||||| ||||||||||| 
Sbjct: 1012 ttattgtagcaaagagcacatgttccaattgccattatctggggtattgcacaaaaacgg 953

                                                     
Query: 625  aaattggaattgtcctttaatgctgacatgtattgaaggca 665
            ||| ||| |   ||||| || ||||||||||| ||||||||
Sbjct: 952  aaaatggcaggatccttcaaggctgacatgtactgaaggca 912
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>gb|AY104947.1| Zea mays PCO094214 mRNA sequence
          Length = 1736

 Score =  246 bits (124), Expect = 8e-62
 Identities = 286/340 (84%)
 Strand = Plus / Minus

                                                                        
Query: 343  ccccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttc 402
            ||||| ||||||| ||| ||||||||||||||||||| |||||||| ||  ||  |  ||
Sbjct: 1278 cccctcctctttaccaaaccagatgacttgcaagtttgctttattgaattcacgtgtctc 1219

                                                                        
Query: 403  cgtgtcagcgcagcatttgggtcgttatcatcaatcttcgactctagcaatgaagagaac 462
            ||||| || ||||||||||| || || ||||||||||| ||||||| ||||||||| |||
Sbjct: 1218 cgtgttagagcagcatttggatcattgtcatcaatctttgactctatcaatgaagaaaac 1159

                                                                        
Query: 463  tcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatccgtgcagtg 522
            ||||||||||| | |||||| ||||| || || |||||||| |||||||| ||||| |||
Sbjct: 1158 tcatagaaagcggtatagacgtctgacattgaatttgtctcgtcaattattcgtgccgtg 1099

                                                                        
Query: 523  agcccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagca 582
            || ||||| |||||||| ||||||||||||||||| | ||| ||||||||||||| ||||
Sbjct: 1098 agaccacgtctcatctttacaactcctctaaagacatgcacgttattgtagcaaagagca 1039

                                                                        
Query: 583  caggtcccaattgccattatctgaggtatcgcacaaaaacgaaaattggaattgtccttt 642
            || || ||||||||||||||||| || || || |||||||| ||  ||| || || ||| 
Sbjct: 1038 catgttccaattgccattatctggggaattgcgcaaaaacggaagatggcatggttcttc 979

                                                    
Query: 643  aatgctgacatgtattgaaggcagtcgtgggcatggatca 682
            || ||||||||||| |||||||| || | |||||| ||||
Sbjct: 978  aaggctgacatgtactgaaggcactcttcggcatgaatca 939



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 274  atagccgccaacaggagcacaatcatgatcagcat 308
            |||||| ||| |||||| |||||||||||||||||
Sbjct: 1344 atagccaccagcaggaggacaatcatgatcagcat 1310
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>ref|XM_477025.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1533

 Score =  145 bits (73), Expect = 2e-31
 Identities = 238/293 (81%)
 Strand = Plus / Minus

                                                                        
Query: 331  tccaggtcgtatccccttctctttagcaacccagatgacttgcaagttttctttattgca 390
            |||| ||| ||||||||| |||| ||||| || ||||| ||||| || | ||||||||||
Sbjct: 1257 tccaagtcatatccccttatcttcagcaaaccggatgatttgcaggtctcctttattgca 1198

                                                                        
Query: 391  tctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatcttcgactctagc 450
            |  ||||| |||||||| ||||  |||||||| || ||||||||||||||     | |||
Sbjct: 1197 ttcacacgtttccgtgtaagcgacgcatttggatcattatcatcaatcttttctgcaagc 1138

                                                                        
Query: 451  aatgaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaatt 510
            | ||||||||| |||||||||||||  || ||||| |  || || ||||| ||||  |||
Sbjct: 1137 agtgaagagaattcatagaaagcagtgtacacatcagccatagaatttgtttcattgatt 1078

                                                                        
Query: 511  atccgtgcagtgagcccacgcctcatcttaacaactcctctaaagactttcacattattg 570
            || |||||||| ||||||||||||| ||| |||||||||| ||| || |||||||| || 
Sbjct: 1077 attcgtgcagtcagcccacgcctcaacttcacaactcctcgaaatacattcacattgtta 1018

                                                                 
Query: 571  tagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaaacg 623
            ||||| | |||| ||||  ||| |||||||| ||| ||||| |||||||||||
Sbjct: 1017 tagcacagagcataggttgcaagtgccattacctggggtattgcacaaaaacg 965
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Minus

                                                                            
Query: 526      ccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagcacag 585
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 33306560 ccacgcctcatcttaacaactcctctaaagacattcacattattgtagcaaatagcacat 33306501

                                     
Query: 586      gtcccaattgccattatctga 606
                |||||||||||||||||||||
Sbjct: 33306500 gtcccaattgccattatctga 33306480



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 454      gaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatc 513
                |||||||||||||||||||||| |||||||||||| || |  ||||||||||||||||  
Sbjct: 33307288 gaagagaactcatagaaagcagtatagacatctgacattgtgtttgtctcatcaattact 33307229

                              
Query: 514      cgtgcagtgagccc 527
                ||||||||||||||
Sbjct: 33307228 cgtgcagtgagccc 33307215



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 603      ctgaggtatcgcacaaaaacgaaaattggaattgtcctttaatgctgacatgtattgaag 662
                ||||||||| ||||||||||| ||| ||| ||  ||||| ||||||||||||||||| ||
Sbjct: 33305132 ctgaggtattgcacaaaaacggaaaatggcatgatccttcaatgctgacatgtattggag 33305073

                      
Query: 663      gcagtc 668
                ||||||
Sbjct: 33305072 gcagtc 33305067



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 345      ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 404
                ||||||||||||  | | |||||||||||| ||| ||||||| ||||| ||||| |||||
Sbjct: 33307760 ccttctctttagtgagcaagatgacttgcaggttctctttatcgcatcaacacgtttccg 33307701

                                                   
Query: 405      tgtcagcgcagcatttgggtcgttatcatcaatct 439
                 || || | ||||||||| || |||| ||||||||
Sbjct: 33307700 cgttagggaagcatttggatcattattatcaatct 33307666
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Minus

                                                                         
Query: 526   ccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagcacag 585
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 63076 ccacgcctcatcttaacaactcctctaaagacattcacattattgtagcaaatagcacat 63017

                                  
Query: 586   gtcccaattgccattatctga 606
             |||||||||||||||||||||
Sbjct: 63016 gtcccaattgccattatctga 62996



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 454   gaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatc 513
             |||||||||||||||||||||| |||||||||||| || |  ||||||||||||||||  
Sbjct: 63804 gaagagaactcatagaaagcagtatagacatctgacattgtgtttgtctcatcaattact 63745

                           
Query: 514   cgtgcagtgagccc 527
             ||||||||||||||
Sbjct: 63744 cgtgcagtgagccc 63731



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 603   ctgaggtatcgcacaaaaacgaaaattggaattgtcctttaatgctgacatgtattgaag 662
             ||||||||| ||||||||||| ||| ||| ||  ||||| ||||||||||||||||| ||
Sbjct: 61648 ctgaggtattgcacaaaaacggaaaatggcatgatccttcaatgctgacatgtattggag 61589

                   
Query: 663   gcagtc 668
             ||||||
Sbjct: 61588 gcagtc 61583



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 345   ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 404
             ||||||||||||  | | |||||||||||| ||| ||||||| ||||| ||||| |||||
Sbjct: 64276 ccttctctttagtgagcaagatgacttgcaggttctctttatcgcatcaacacgtttccg 64217

                                                
Query: 405   tgtcagcgcagcatttgggtcgttatcatcaatct 439
              || || | ||||||||| || |||| ||||||||
Sbjct: 64216 cgttagggaagcatttggatcattattatcaatct 64182
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Minus

                                                                            
Query: 526      ccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagcacag 585
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 33397070 ccacgcctcatcttaacaactcctctaaagacattcacattattgtagcaaatagcacat 33397011

                                     
Query: 586      gtcccaattgccattatctga 606
                |||||||||||||||||||||
Sbjct: 33397010 gtcccaattgccattatctga 33396990



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 454      gaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatc 513
                |||||||||||||||||||||| |||||||||||| || |  ||||||||||||||||  
Sbjct: 33397798 gaagagaactcatagaaagcagtatagacatctgacattgtgtttgtctcatcaattact 33397739

                              
Query: 514      cgtgcagtgagccc 527
                ||||||||||||||
Sbjct: 33397738 cgtgcagtgagccc 33397725



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 603      ctgaggtatcgcacaaaaacgaaaattggaattgtcctttaatgctgacatgtattgaag 662
                ||||||||| ||||||||||| ||| ||| ||  ||||| ||||||||||||||||| ||
Sbjct: 33395642 ctgaggtattgcacaaaaacggaaaatggcatgatccttcaatgctgacatgtattggag 33395583

                      
Query: 663      gcagtc 668
                ||||||
Sbjct: 33395582 gcagtc 33395577



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 345      ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 404
                ||||||||||||  | | |||||||||||| ||| ||||||| ||||| ||||| |||||
Sbjct: 33398270 ccttctctttagtgagcaagatgacttgcaggttctctttatcgcatcaacacgtttccg 33398211

                                                   
Query: 405      tgtcagcgcagcatttgggtcgttatcatcaatct 439
                 || || | ||||||||| || |||| ||||||||
Sbjct: 33398210 cgttagggaagcatttggatcattattatcaatct 33398176
to top
>dbj|AK063341.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B01, full
            insert sequence
          Length = 1533

 Score =  145 bits (73), Expect = 2e-31
 Identities = 238/293 (81%)
 Strand = Plus / Minus

                                                                        
Query: 331  tccaggtcgtatccccttctctttagcaacccagatgacttgcaagttttctttattgca 390
            |||| ||| ||||||||| |||| ||||| || ||||| ||||| || | ||||||||||
Sbjct: 1257 tccaagtcatatccccttatcttcagcaaaccggatgatttgcaggtctcctttattgca 1198

                                                                        
Query: 391  tctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatcttcgactctagc 450
            |  ||||| |||||||| ||||  |||||||| || ||||||||||||||     | |||
Sbjct: 1197 ttcacacgtttccgtgtaagcgacgcatttggatcattatcatcaatcttttctgcaagc 1138

                                                                        
Query: 451  aatgaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaatt 510
            | ||||||||| |||||||||||||  || ||||| |  || || ||||| ||||  |||
Sbjct: 1137 agtgaagagaattcatagaaagcagtgtacacatcagccatagaatttgtttcattgatt 1078

                                                                        
Query: 511  atccgtgcagtgagcccacgcctcatcttaacaactcctctaaagactttcacattattg 570
            || |||||||| ||||||||||||| ||| |||||||||| ||| || |||||||| || 
Sbjct: 1077 attcgtgcagtcagcccacgcctcaacttcacaactcctcgaaatacattcacattgtta 1018

                                                                 
Query: 571  tagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaaacg 623
            ||||| | |||| ||||  ||| |||||||| ||| ||||| |||||||||||
Sbjct: 1017 tagcacagagcataggttgcaagtgccattacctggggtattgcacaaaaacg 965
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 345     ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 404
               |||| |||| ||||| || ||||| ||||| || | |||||||||||  ||||| |||||
Sbjct: 5477484 ccttatcttcagcaaaccggatgatttgcaggtctcctttattgcattcacacgtttccg 5477425

                                                  
Query: 405     tgtcagcgcagcatttgggtcgttatcatcaatct 439
               ||| ||||  |||||||| || |||||||||||||
Sbjct: 5477424 tgtaagcgacgcatttggatcattatcatcaatct 5477390



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 448     agcaatgaagagaactcatagaaagcag 475
               |||| ||||||||| |||||||||||||
Sbjct: 5476979 agcagtgaagagaattcatagaaagcag 5476952
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                          
Query: 345    ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 404
              |||| |||| ||||| || ||||| ||||| || | |||||||||||  ||||| |||||
Sbjct: 111465 ccttatcttcagcaaaccggatgatttgcaggtctcctttattgcattcacacgtttccg 111406

                                                 
Query: 405    tgtcagcgcagcatttgggtcgttatcatcaatct 439
              ||| ||||  |||||||| || |||||||||||||
Sbjct: 111405 tgtaagcgacgcatttggatcattatcatcaatct 111371



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 448    agcaatgaagagaactcatagaaagcag 475
              |||| ||||||||| |||||||||||||
Sbjct: 110960 agcagtgaagagaattcatagaaagcag 110933
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>gb|AY230869.1| Phragmites australis clone PaGT9 microsatellite sequence
          Length = 354

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                       
Query: 345 ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 404
           ||||||||||| ||| || |||  | ||||||||| |||||||| ||| ||||| |||||
Sbjct: 97  ccttctctttaccaaaccggatagcatgcaagtttgctttattgaatccacacgtttccg 156

                             
Query: 405 tgtcagcgcagcatttgg 422
           ||| ||| ||||||||||
Sbjct: 157 tgttagcacagcatttgg 174
to top
>dbj|AB007503.1| Glycine max mRNA for squalene synthase, complete cds
          Length = 1590

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 589 ccaattgccattatctgaggtatcgcacaaaaacgaaa 626
           ||||||||||||||||| ||||| |||||||| |||||
Sbjct: 995 ccaattgccattatctggggtatagcacaaaagcgaaa 958
to top
>emb|AJ430610.1|MTR430610 Medicago truncatula mRNA for farnesyl-diphosphate farnesyltransferase
            (sqs1 gene)
          Length = 1776

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 589  ccaattgccattatctgaggtatcgcacaaaaacgaaaatt 629
            ||||||||||||| |||||| || |||||||| ||||||||
Sbjct: 1142 ccaattgccattacctgaggaatagcacaaaagcgaaaatt 1102
to top
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 482     catctgatatcgattttgtctcatca 507
               ||||||||||||||||| ||||||||
Sbjct: 1344166 catctgatatcgattttatctcatca 1344191
to top
>dbj|AB102688.1| Lotus japonicus LjSqS mRNA for squalene synthase, complete cds
          Length = 1899

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 589  ccaattgccattatctgaggtatcgcacaaaaacgaaa 626
            ||||||||||||||||| || || |||||||| |||||
Sbjct: 1138 ccaattgccattatctggggaatagcacaaaagcgaaa 1101
to top
>dbj|D86410.1| Glycyrrhiza glabra mRNA for squalene synthase, complete cds
           (GGSQS2)
          Length = 1473

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 589 ccaattgccattatctgaggtatcgcacaaaaacgaaa 626
           ||||||||||||||||| || || |||||||| |||||
Sbjct: 976 ccaattgccattatctggggaatagcacaaaagcgaaa 939
to top
>emb|AJ238762.1|RHE238762 Rickettsia helvetica ftsY (partial), polA, dnaE (partial) and hicB
            genes and metK pseudogene
          Length = 8033

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 88   aaagaacaaaaacaattagca 108
            |||||||||||||||||||||
Sbjct: 6286 aaagaacaaaaacaattagca 6306
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>emb|CR392004.12| Zebrafish DNA sequence from clone CH211-165H11 in linkage group 18,
             complete sequence
          Length = 64955

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    acagaaataaagaacaaaaac 100
             |||||||||||||||||||||
Sbjct: 32520 acagaaataaagaacaaaaac 32500
to top
>emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 in linkage group 18,
             complete sequence
          Length = 185008

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    acagaaataaagaacaaaaac 100
             |||||||||||||||||||||
Sbjct: 26303 acagaaataaagaacaaaaac 26283
to top
>ref|NM_183424.1| Mus musculus P518 precursor protein (P518), mRNA
          Length = 2866

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  cacaaaaggaccatgttgac 241
            ||||||||||||||||||||
Sbjct: 2108 cacaaaaggaccatgttgac 2127
to top
>gb|AC112942.11| Mus musculus chromosome 7, clone RP23-449N21, complete sequence
          Length = 162570

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 620    aacgaaaattggaattgtcc 639
              ||||||||||||||||||||
Sbjct: 102528 aacgaaaattggaattgtcc 102509
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>gb|AC135637.5| Mus musculus BAC clone RP23-298I23 from chromosome 14, complete
             sequence
          Length = 130323

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   gttttctttattgcatctac 395
             ||||||||||||||||||||
Sbjct: 55386 gttttctttattgcatctac 55405
to top
>gb|AY445506.1| Artemisia annua squalene synthase mRNA, complete cds
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 565 ttattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaa 620
           ||||||||||| | ||||   || ||||||||||| ||||| ||||| ||||||||
Sbjct: 908 ttattgtagcataaagcaagtgttccaattgccatgatctgtggtattgcacaaaa 853
to top
>gb|AC132329.4| Mus musculus BAC clone RP24-206F15 from chromosome 18, complete sequence
          Length = 142250

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 413    cagcatttgggtcgttatcatcaa 436
              ||||||||||||| ||||||||||
Sbjct: 112824 cagcatttgggtctttatcatcaa 112801
to top
>gb|AC122476.4| Mus musculus BAC clone RP24-334L2 from chromosome 18, complete sequence
          Length = 200538

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 376    gttttctttattgcatctac 395
              ||||||||||||||||||||
Sbjct: 129774 gttttctttattgcatctac 129755
to top
>gb|AC122826.4| Mus musculus BAC clone RP23-209L3 from chromosome 18, complete sequence
          Length = 197208

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 413    cagcatttgggtcgttatcatcaa 436
              ||||||||||||| ||||||||||
Sbjct: 165414 cagcatttgggtctttatcatcaa 165437
to top
>emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 in linkage group 16,
            complete sequence
          Length = 179375

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   gacagaaataaagaacaaaa 98
            ||||||||||||||||||||
Sbjct: 7982 gacagaaataaagaacaaaa 7963
to top
>gb|U53181.1| Caenorhabditis elegans cosmid F36D4, complete sequence
          Length = 42041

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   gacagaaataaagaacaaaa 98
            ||||||||||||||||||||
Sbjct: 5773 gacagaaataaagaacaaaa 5754
to top
>gb|AC183690.3| Cavia porcellus clone CH234-212D11, complete sequence
          Length = 108490

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 462   ctcatagaaagcagaataga 481
             ||||||||||||||||||||
Sbjct: 27119 ctcatagaaagcagaataga 27138
to top
>gb|AC156941.3| Mus musculus BAC clone RP23-25D8 from chromosome 14, complete sequence
          Length = 214940

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   gttttctttattgcatctac 395
             ||||||||||||||||||||
Sbjct: 44914 gttttctttattgcatctac 44895
to top
>emb|AL451064.6| Human DNA sequence from clone RP11-177G23 on chromosome 6 Contains the
             the 5' end of the SH3BGRL2 gene for SH3 domain binding
             glutamic acid-rich protein-like 2 and a CpG island,
             complete sequence
          Length = 79743

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    aaataaagaacaaaaacaat 103
             ||||||||||||||||||||
Sbjct: 67987 aaataaagaacaaaaacaat 68006
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>emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chromosome 6 Contains the
             3' end of the RREB1 gene for ras responsive element
             binding protein 1, part of a novel gene, the SSR1 gene for
             signal sequence receptor alpha (translocon-associated
             protein alpha), the ATP5GP1 pseudogene (ATPsynthase, H+
             transporting, mitochondrial F0 complex, subunit c (subunit
             9)), a ribosomal protein S3 pseudogene, the CAGE1 gene for
             cancer antigen 1, the 5' end of the RIOK1 gene for RIO
             kinase 1 (yeast) and three CpG islands, complete sequence
          Length = 167206

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    aaagaacaaaaacaattagc 107
             ||||||||||||||||||||
Sbjct: 43926 aaagaacaaaaacaattagc 43907
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>gb|AC158128.3| Mus musculus chromosome 15, clone RP24-310D6, complete sequence
          Length = 158257

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     cagaaagtctctcctagattcaaa 48
              ||||||||||||||| ||||||||
Sbjct: 140565 cagaaagtctctccttgattcaaa 140588
to top
>gb|BC033349.1| Homo sapiens ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog,
            yeast), transcript variant 1, mRNA (cDNA clone MGC:42697
            IMAGE:4827210), complete cds
          Length = 1979

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 521  tgagcccacgcctcatctta 540
            ||||||||||||||||||||
Sbjct: 1160 tgagcccacgcctcatctta 1179
to top
>gb|AC097633.2| Homo sapiens chromosome 3 clone RP11-96F15, complete sequence
          Length = 159349

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 634   ttgtcctttaatgctgacatgtattgaa 661
             |||||||| ||||||||||||| |||||
Sbjct: 66004 ttgtccttgaatgctgacatgtcttgaa 66031
to top
>gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, complete sequence
          Length = 160693

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 634  ttgtcctttaatgctgacatgtattgaa 661
            |||||||| ||||||||||||| |||||
Sbjct: 5699 ttgtccttgaatgctgacatgtcttgaa 5726
to top
>dbj|AK093863.1| Homo sapiens cDNA FLJ36544 fis, clone TRACH2006378
          Length = 2670

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 634 ttgtcctttaatgctgacatgtattgaa 661
           |||||||| ||||||||||||| |||||
Sbjct: 438 ttgtccttgaatgctgacatgtcttgaa 465
to top
>dbj|AK024294.1| Homo sapiens cDNA FLJ14232 fis, clone NT2RP4000035
          Length = 3193

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   aaagaacaaaaacaattagc 107
            ||||||||||||||||||||
Sbjct: 2993 aaagaacaaaaacaattagc 3012
to top
>gb|AC012464.25| Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173765

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     agaaataaagaacaaaaaca 101
              ||||||||||||||||||||
Sbjct: 162041 agaaataaagaacaaaaaca 162022
to top
>gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, complete sequence
          Length = 181552

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 361   ccagatgacttgcaagttttcttt 384
             |||| |||||||||||||||||||
Sbjct: 12937 ccagttgacttgcaagttttcttt 12914
to top
>gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 map RNS1, complete
             sequence
          Length = 81341

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ataaagaacaaaaacaatta 105
             ||||||||||||||||||||
Sbjct: 24886 ataaagaacaaaaacaatta 24867
to top
>dbj|AK029144.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732496P06 product:hypothetical protein,
            full insert sequence
          Length = 2866

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  cacaaaaggaccatgttgac 241
            ||||||||||||||||||||
Sbjct: 2108 cacaaaaggaccatgttgac 2127
to top
>gb|AF302464.2|AF302464 Artemisia annua squalene synthase mRNA, complete cds
          Length = 1539

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 589 ccaattgccattatctgaggtatcgcacaaaa 620
           ||||||||||| ||||| ||||| ||||||||
Sbjct: 907 ccaattgccatgatctgtggtattgcacaaaa 876
to top
>emb|AL806520.36| Mouse DNA sequence from clone RP23-19M23 on chromosome X, complete
             sequence
          Length = 190804

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   gttttctttattgcatctac 395
             ||||||||||||||||||||
Sbjct: 47405 gttttctttattgcatctac 47386
to top
>emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, complete sequence
          Length = 163120

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     gacagaaataaagaacaaaa 98
              ||||||||||||||||||||
Sbjct: 143064 gacagaaataaagaacaaaa 143083
to top
>emb|AJ970587.1| Candidatus Phytoplasma solani partial gene for PAM314 homologue,
           clone SDR0009 and SDR0012
          Length = 685

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 87  taaagaacaaaaacaattag 106
           ||||||||||||||||||||
Sbjct: 679 taaagaacaaaaacaattag 660
to top
>gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, complete sequence
          Length = 186051

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    cagaaagtctctcctagattcaaa 48
             ||||||||||||||| ||||||||
Sbjct: 73932 cagaaagtctctccttgattcaaa 73909
to top
>emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 in linkage group 18,
             complete sequence
          Length = 169784

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 120   agcagggtacatagcacaatacta 143
             |||||||||||||| |||||||||
Sbjct: 17629 agcagggtacatagaacaatacta 17606
to top
>gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, complete sequence
          Length = 222238

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    agcatgggcattctatactt 323
              ||||||||||||||||||||
Sbjct: 126200 agcatgggcattctatactt 126181
to top
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    tcatgatcagcatgggcatt 315
              ||||||||||||||||||||
Sbjct: 436316 tcatgatcagcatgggcatt 436335
to top
>gb|AC174763.1| Gasterosteus aculeatus clone VMRC28-119C03, complete sequence
          Length = 138567

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    aaataaagaacaaaaacaat 103
             ||||||||||||||||||||
Sbjct: 35560 aaataaagaacaaaaacaat 35541
to top
>emb|CT025617.12| Mouse DNA sequence from clone RP23-442A13 on chromosome 9, complete
             sequence
          Length = 193308

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   gttttctttattgcatctac 395
             ||||||||||||||||||||
Sbjct: 92963 gttttctttattgcatctac 92944
to top
>emb|AL929275.8| Mouse DNA sequence from clone RP23-65P13 on chromosome 2, complete
              sequence
          Length = 197356

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    cacaaaaggaccatgttgac 241
              ||||||||||||||||||||
Sbjct: 145851 cacaaaaggaccatgttgac 145832
to top
>emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chromosome 2, complete
             sequence
          Length = 138602

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 547   cctctaaagactttcacatt 566
             ||||||||||||||||||||
Sbjct: 85299 cctctaaagactttcacatt 85280



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 635   tgtcctttaatgctgacatg 654
             ||||||||||||||||||||
Sbjct: 51619 tgtcctttaatgctgacatg 51600
to top
>gb|AC108138.6| Homo sapiens chromosome 18, clone RP11-235B21, complete sequence
          Length = 57830

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 361   ccagatgacttgcaagttttcttt 384
             |||| |||||||||||||||||||
Sbjct: 31452 ccagttgacttgcaagttttcttt 31429
to top
>emb|AL845441.7| Mouse DNA sequence from clone RP23-327I5 on chromosome 2, complete
             sequence
          Length = 153307

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   gttttctttattgcatctac 395
             ||||||||||||||||||||
Sbjct: 91130 gttttctttattgcatctac 91149
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>emb|AL121653.2|CNS01DS3 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 164M19 of
             library CITB_978_SKB from chromosome 2 of Homo sapiens
             (Human)
          Length = 138909

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   atagaaagcagaatagacat 484
             ||||||||||||||||||||
Sbjct: 71686 atagaaagcagaatagacat 71705


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,093,764
Number of Sequences: 3902068
Number of extensions: 7093764
Number of successful extensions: 131943
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131655
Number of HSP's gapped (non-prelim): 285
length of query: 694
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 671
effective length of database: 17,143,297,704
effective search space: 11503152759384
effective search space used: 11503152759384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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