ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196627.1| Oryza sativa (japonica cultivar-group) putative... 80 1e-11
2gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
4dbj|AK069549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 1e-11
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
6ref|NM_196629.1| Oryza sativa (japonica cultivar-group) unknown ... 72 3e-09
7gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 72 3e-09
8dbj|AK072819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-09
9dbj|AK072713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 1e-05
10gb|AY105065.1| Zea mays PCO098028 mRNA sequence 46 0.16
11ref|XM_617995.2| PREDICTED: Bos taurus similar to A-kinase ancho... 42 2.4
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
13gb|AC093591.3| Homo sapiens BAC clone RP11-50D9 from 4, complete... 42 2.4
14dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
15dbj|AK107839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
16gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 42 2.4
17gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, compl... 42 2.4
18gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome 40 9.6
19gb|AC150916.3| Bos taurus BAC CH240-309L24 (Children's Hospital... 40 9.6
20gb|DQ525716.1| Homo sapiens transferrin (TF) gene, complete cds 40 9.6
21gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 9.6
22ref|XM_390896.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 9.6
23gb|AF288143.1|AF294270S7 Homo sapiens transferin gene, exons 15 ... 40 9.6
24gb|AC157792.4| Mus musculus chromosome 7, clone RP24-192N20, com... 40 9.6
25gb|AY308797.1| Homo sapiens transferrin (TF) gene, complete cds 40 9.6
26gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, com... 40 9.6
27emb|AJ002604.1|PSAJ2604 Pinus sylvestris mRNA for novel high pI ... 40 9.6
28emb|AJ307586.1|PSY307586 Pinus sylvestris mRNA for superoxide di... 40 9.6
29gb|AC080128.21| Homo sapiens 3 BAC RP11-404G16 (Roswell Park Can... 40 9.6
30dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 40 9.6
31gb|AC027189.5| Homo sapiens chromosome 8, clone RP11-129J1, comp... 40 9.6
32ref|NM_077900.1| Caenorhabditis elegans F55F3.4 (F55F3.4) mRNA, ... 40 9.6
33emb|Z81550.1|CEF55F3 Caenorhabditis elegans Cosmid F55F3, comple... 40 9.6
34gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, comp... 40 9.6
35dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.6
36dbj|AP006129.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.6
37gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge... 40 9.6 
>ref|NM_196627.1| Oryza sativa (japonica cultivar-group) putative speckle-type protein
            (OSJNBa0073D04.37), mRNA
          Length = 2157

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 219  tccatgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttacca 278
            ||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||  |||
Sbjct: 1802 tccatgttgctgtctggagaaccaagtatacacgccagtgggtcctccatgaggtctcca 1743

                
Query: 279  aatg 282
            ||||
Sbjct: 1742 aatg 1739



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 441  gcaaagaaatgcttttttacagcttcaaccgataatttttcatcactgtgctttgtaagt 500
            |||||||| ||| |||||||||||||||||  |  ||| ||||||||||||||  | |||
Sbjct: 1571 gcaaagaactgcgtttttacagcttcaaccagtgttttatcatcactgtgcttattgagt 1512

                                     
Query: 501  attatattagctagctccattttca 525
            ||||| |||| ||||||||| ||||
Sbjct: 1511 attatgttagatagctccatcttca 1487



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 334  cttcaatctccttcactctttccaaataggtgctgtcaacata 376
            |||| ||||||||||| ||||||| | ||| ||||||||||||
Sbjct: 1678 cttcgatctccttcaccctttccataaaggcgctgtcaacata 1636
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>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04,
              complete sequence
          Length = 155372

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                          
Query: 219    tccatgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttacca 278
              ||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||  |||
Sbjct: 140824 tccatgttgctgtctggagaaccaagtatacacgccagtgggtcctccatgaggtctcca 140765

                  
Query: 279    aatg 282
              ||||
Sbjct: 140764 aatg 140761



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                          
Query: 222    atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
              ||||||| |||||||||||| | |||||| |||||||| |||||||||||||  ||||||
Sbjct: 151487 atgtcgccgtctggagaaccaagtatacaagccagtggatcctccatgaggtctccaaat 151428

                  
Query: 282    gatc 285
              ||||
Sbjct: 151427 gatc 151424



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 222    atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
              |||| |||||||| |||||| | |||||| || || ||||||||||||||||  ||||||
Sbjct: 146734 atgttgctgtctgaagaaccaagtatacaagctagcgggtcctccatgaggtctccaaat 146675

                  
Query: 282    gatc 285
              ||||
Sbjct: 146674 gatc 146671



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 441    gcaaagaaatgcttttttacagcttcaaccgataatttttcatcactgtgctt 493
              |||||||| ||| |||||||||||||||||  |  ||| ||||||||||||||
Sbjct: 140509 gcaaagaactgcgtttttacagcttcaaccagtgttttatcatcactgtgctt 140457



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 334    cttcaatctccttcactctttccaaataggtgctgtcaacata 376
              |||| ||||||||||| ||||||| | | ||||||||||||||
Sbjct: 151290 cttcgatctccttcaccctttccataaaagtgctgtcaacata 151248



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 334    cttcaatctccttcactctttccaaataggtgctgtcaacata 376
              |||| ||||||||||| ||||||| | ||| ||||||||||||
Sbjct: 140616 cttcgatctccttcaccctttccataaaggcgctgtcaacata 140574



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                          
Query: 133    gacgatgatgccgctgacttctcctccgagctcgaaggtctcttttcctgtggatagtag 192
              ||||||||||||| ||||||||  || | ||||| || |||||| || |  |||||||| 
Sbjct: 136950 gacgatgatgccggtgacttcttttctgggctcgcagctctcttctcttcaggatagtac 137009

                          
Query: 193    ctgtgcgctcag 204
              ||||| ||||||
Sbjct: 137010 ctgtgtgctcag 137021
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 219      tccatgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttacca 278
                ||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||  |||
Sbjct: 14815675 tccatgttgctgtctggagaaccaagtatacacgccagtgggtcctccatgaggtctcca 14815616

                    
Query: 279      aatg 282
                ||||
Sbjct: 14815615 aatg 14815612



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 222      atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
                ||||||| |||||||||||| | |||||| |||||||| |||||||||||||  ||||||
Sbjct: 14826338 atgtcgccgtctggagaaccaagtatacaagccagtggatcctccatgaggtctccaaat 14826279

                    
Query: 282      gatc 285
                ||||
Sbjct: 14826278 gatc 14826275



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 222      atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
                |||| |||||||| |||||| | |||||| || || ||||||||||||||||  ||||||
Sbjct: 14821585 atgttgctgtctgaagaaccaagtatacaagctagcgggtcctccatgaggtctccaaat 14821526

                    
Query: 282      gatc 285
                ||||
Sbjct: 14821525 gatc 14821522



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 441      gcaaagaaatgcttttttacagcttcaaccgataatttttcatcactgtgctt 493
                |||||||| ||| |||||||||||||||||  |  ||| ||||||||||||||
Sbjct: 14815360 gcaaagaactgcgtttttacagcttcaaccagtgttttatcatcactgtgctt 14815308



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 334      cttcaatctccttcactctttccaaataggtgctgtcaacata 376
                |||| ||||||||||| ||||||| | | ||||||||||||||
Sbjct: 14826141 cttcgatctccttcaccctttccataaaagtgctgtcaacata 14826099



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 334      cttcaatctccttcactctttccaaataggtgctgtcaacata 376
                |||| ||||||||||| ||||||| | ||| ||||||||||||
Sbjct: 14815467 cttcgatctccttcaccctttccataaaggcgctgtcaacata 14815425



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                            
Query: 133      gacgatgatgccgctgacttctcctccgagctcgaaggtctcttttcctgtggatagtag 192
                ||||||||||||| ||||||||  || | ||||| || |||||| || |  |||||||| 
Sbjct: 14811801 gacgatgatgccggtgacttcttttctgggctcgcagctctcttctcttcaggatagtac 14811860

                            
Query: 193      ctgtgcgctcag 204
                ||||| ||||||
Sbjct: 14811861 ctgtgtgctcag 14811872
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>dbj|AK069549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024I10, full
           insert sequence
          Length = 1233

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 219 tccatgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttacca 278
           ||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||  |||
Sbjct: 741 tccatgttgctgtctggagaaccaagtatacacgccagtgggtcctccatgaggtctcca 682

               
Query: 279 aatg 282
           ||||
Sbjct: 681 aatg 678



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                       
Query: 441 gcaaagaaatgcttttttacagcttcaaccgataatttttcatcactgtgctttgtaagt 500
           |||||||| ||| |||||||||||||||||  |  ||| ||||||||||||||  | |||
Sbjct: 510 gcaaagaactgcgtttttacagcttcaaccagtgttttatcatcactgtgcttattgagt 451

                                    
Query: 501 attatattagctagctccattttca 525
           ||||| |||| ||||||||| ||||
Sbjct: 450 attatgttagatagctccatcttca 426



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 334 cttcaatctccttcactctttccaaataggtgctgtcaacata 376
           |||| ||||||||||| ||||||| | ||| ||||||||||||
Sbjct: 617 cttcgatctccttcaccctttccataaaggcgctgtcaacata 575
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 219      tccatgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttacca 278
                ||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||  |||
Sbjct: 14823916 tccatgttgctgtctggagaaccaagtatacacgccagtgggtcctccatgaggtctcca 14823857

                    
Query: 279      aatg 282
                ||||
Sbjct: 14823856 aatg 14823853



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 222      atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
                ||||||| |||||||||||| | |||||| |||||||| |||||||||||||  ||||||
Sbjct: 14834579 atgtcgccgtctggagaaccaagtatacaagccagtggatcctccatgaggtctccaaat 14834520

                    
Query: 282      gatc 285
                ||||
Sbjct: 14834519 gatc 14834516



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 222      atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
                |||| |||||||| |||||| | |||||| || || ||||||||||||||||  ||||||
Sbjct: 14829826 atgttgctgtctgaagaaccaagtatacaagctagcgggtcctccatgaggtctccaaat 14829767

                    
Query: 282      gatc 285
                ||||
Sbjct: 14829766 gatc 14829763



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                     
Query: 441      gcaaagaaatgcttttttacagcttcaaccgataatttttcatcactgtgctt 493
                |||||||| ||| |||||||||||||||||  |  ||| ||||||||||||||
Sbjct: 14823601 gcaaagaactgcgtttttacagcttcaaccagtgttttatcatcactgtgctt 14823549



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 334      cttcaatctccttcactctttccaaataggtgctgtcaacata 376
                |||| ||||||||||| ||||||| | | ||||||||||||||
Sbjct: 14834382 cttcgatctccttcaccctttccataaaagtgctgtcaacata 14834340



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                           
Query: 334      cttcaatctccttcactctttccaaataggtgctgtcaacata 376
                |||| ||||||||||| ||||||| | ||| ||||||||||||
Sbjct: 14823708 cttcgatctccttcaccctttccataaaggcgctgtcaacata 14823666



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                            
Query: 133      gacgatgatgccgctgacttctcctccgagctcgaaggtctcttttcctgtggatagtag 192
                ||||||||||||| ||||||||  || | ||||| || |||||| || |  |||||||| 
Sbjct: 14820042 gacgatgatgccggtgacttcttttctgggctcgcagctctcttctcttcaggatagtac 14820101

                            
Query: 193      ctgtgcgctcag 204
                ||||| ||||||
Sbjct: 14820102 ctgtgtgctcag 14820113
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>ref|NM_196629.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0019M20.1), mRNA
          Length = 834

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 222 atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
           ||||||| |||||||||||| | |||||| |||||||| |||||||||||||  ||||||
Sbjct: 680 atgtcgccgtctggagaaccaagtatacaagccagtggatcctccatgaggtctccaaat 621

               
Query: 282 gatc 285
           ||||
Sbjct: 620 gatc 617



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 441 gcaaagaaatgcttttttacagcttcaaccgataatttttcatcactgtgctttgtaagt 500
           |||||||| || | ||||||||||||||||  |   ||||||||| | ||||| ||||||
Sbjct: 452 gcaaagaagtgttgttttacagcttcaaccagtgtcttttcatcattatgcttagtaagt 393

                                           
Query: 501 attatattagctagctccattttcaagcgctc 532
           ||||| |||||||||||||| |||| ||||||
Sbjct: 392 attatgttagctagctccatcttcatgcgctc 361



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 334 cttcaatctccttcactctttccaaataggtgctgtcaacata 376
           |||| ||||||||||| ||||||| | | ||||||||||||||
Sbjct: 559 cttcgatctccttcaccctttccataaaagtgctgtcaacata 517
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>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            nbxb0019M20, complete sequence
          Length = 139421

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 222  atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
            ||||||| |||||||||||| | |||||| |||||||| |||||||||||||  ||||||
Sbjct: 6116 atgtcgccgtctggagaaccaagtatacaagccagtggatcctccatgaggtctccaaat 6057

                
Query: 282  gatc 285
            ||||
Sbjct: 6056 gatc 6053



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                        
Query: 222  atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
            |||| |||||||| |||||| | |||||| || || ||||||||||||||||  ||||||
Sbjct: 1363 atgttgctgtctgaagaaccaagtatacaagctagcgggtcctccatgaggtctccaaat 1304

                
Query: 282  gatc 285
            ||||
Sbjct: 1303 gatc 1300



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 334  cttcaatctccttcactctttccaaataggtgctgtcaacata 376
            |||| ||||||||||| ||||||| | | ||||||||||||||
Sbjct: 5919 cttcgatctccttcaccctttccataaaagtgctgtcaacata 5877
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>dbj|AK072819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141F19, full
           insert sequence
          Length = 1517

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 222 atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
           ||||||| |||||||||||| | |||||| |||||||| |||||||||||||  ||||||
Sbjct: 762 atgtcgccgtctggagaaccaagtatacaagccagtggatcctccatgaggtctccaaat 703

               
Query: 282 gatc 285
           ||||
Sbjct: 702 gatc 699



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 441 gcaaagaaatgcttttttacagcttcaaccgataatttttcatcactgtgctttgtaagt 500
           |||||||| || | ||||||||||||||||  |   ||||||||| | ||||| ||||||
Sbjct: 534 gcaaagaagtgttgttttacagcttcaaccagtgtcttttcatcattatgcttagtaagt 475

                                           
Query: 501 attatattagctagctccattttcaagcgctc 532
           ||||| |||||||||||||| |||| ||||||
Sbjct: 474 attatgttagctagctccatcttcatgcgctc 443



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 334 cttcaatctccttcactctttccaaataggtgctgtcaacata 376
           |||| ||||||||||| ||||||| | | ||||||||||||||
Sbjct: 641 cttcgatctccttcaccctttccataaaagtgctgtcaacata 599
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>dbj|AK072713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139G03, full
           insert sequence
          Length = 1098

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 476 tttttcatcactgtgctttgtaagtattatattagctagctccattttca 525
           |||||||||||| |||||  |||||||||||||||| |||||||| ||||
Sbjct: 494 tttttcatcactatgcttattaagtattatattagcaagctccatcttca 445



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 222 atgtcgctgtctggagaacctaatatacaggccagtgggtcctccatgaggttaccaaat 281
           |||| |||||||| |||||| | |||||| || || ||||||||||||||||  ||||||
Sbjct: 757 atgttgctgtctgaagaaccaagtatacaagctagcgggtcctccatgaggtctccaaat 698

               
Query: 282 gatc 285
           ||||
Sbjct: 697 gatc 694
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>gb|AY105065.1| Zea mays PCO098028 mRNA sequence
          Length = 1056

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 324 gagttgttggcttcaatctccttcactctttccaaataggtgctgtcaacatacg 378
           |||||| |||||||||  ||||||  |||||| | | ||||||||||||||||||
Sbjct: 727 gagttgctggcttcaacttccttcgttctttctacaaaggtgctgtcaacatacg 673
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>ref|XM_617995.2| PREDICTED: Bos taurus similar to A-kinase anchor protein 6
            (LOC537810), partial mRNA
          Length = 4639

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 70   catcaagtatcactgctccat 90
            |||||||||||||||||||||
Sbjct: 1091 catcaagtatcactgctccat 1111
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 20       tatcagaagtatgtttgcaac 40
                |||||||||||||||||||||
Sbjct: 16563943 tatcagaagtatgtttgcaac 16563923
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>gb|AC093591.3| Homo sapiens BAC clone RP11-50D9 from 4, complete sequence
          Length = 158758

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    aagtatgtttgcaacattgtt 46
             |||||||||||||||||||||
Sbjct: 63470 aagtatgtttgcaacattgtt 63450
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>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1123_B08
          Length = 134028

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    tatcagaagtatgtttgcaac 40
             |||||||||||||||||||||
Sbjct: 96168 tatcagaagtatgtttgcaac 96148
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>dbj|AK107839.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-H08, full
           insert sequence
          Length = 746

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 20  tatcagaagtatgtttgcaac 40
           |||||||||||||||||||||
Sbjct: 556 tatcagaagtatgtttgcaac 536
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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 46     tgaagggaaatggaaatattc 66
              |||||||||||||||||||||
Sbjct: 853672 tgaagggaaatggaaatattc 853692
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>gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, complete sequence
          Length = 174164

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 258    gggtcctccatgaggttacca 278
              |||||||||||||||||||||
Sbjct: 120106 gggtcctccatgaggttacca 120086
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>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 679    gtacttgaccagaagcaaat 698
              ||||||||||||||||||||
Sbjct: 767621 gtacttgaccagaagcaaat 767602
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>gb|AC150916.3| Bos taurus  BAC CH240-309L24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 158580

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    agaaattctcggcaaagaaa 449
              ||||||||||||||||||||
Sbjct: 125028 agaaattctcggcaaagaaa 125047
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>gb|DQ525716.1| Homo sapiens transferrin (TF) gene, complete cds
          Length = 33191

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   ttccaaataggtgctgtcaa 372
             ||||||||||||||||||||
Sbjct: 30898 ttccaaataggtgctgtcaa 30879
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 614     accagcaccagcagaaaaag 633
               ||||||||||||||||||||
Sbjct: 2733571 accagcaccagcagaaaaag 2733552
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>ref|XM_390896.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10720.1)
            partial mRNA
          Length = 7269

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  catgtcgacgatgatgccgc 146
            ||||||||||||||||||||
Sbjct: 2754 catgtcgacgatgatgccgc 2773
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>gb|AF288143.1|AF294270S7 Homo sapiens transferin gene, exons 15 and 16
          Length = 2506

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 353  ttccaaataggtgctgtcaa 372
            ||||||||||||||||||||
Sbjct: 1838 ttccaaataggtgctgtcaa 1819
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>gb|AC157792.4| Mus musculus chromosome 7, clone RP24-192N20, complete sequence
          Length = 164990

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   atttttcatcactgtgcttt 494
             ||||||||||||||||||||
Sbjct: 26239 atttttcatcactgtgcttt 26258
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>gb|AY308797.1| Homo sapiens transferrin (TF) gene, complete cds
          Length = 37308

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 353   ttccaaataggtgctgtcaa 372
             ||||||||||||||||||||
Sbjct: 33078 ttccaaataggtgctgtcaa 33059
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>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence
          Length = 203937

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     tgaagggaaatggaaatatt 65
              ||||||||||||||||||||
Sbjct: 100383 tgaagggaaatggaaatatt 100364
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>emb|AJ002604.1|PSAJ2604 Pinus sylvestris mRNA for novel high pI CuZn-superoxide dismutase
          Length = 1038

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 ctttatcctggtattgatca 425
           ||||||||||||||||||||
Sbjct: 662 ctttatcctggtattgatca 643



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 ctttatcctggtattgatca 425
           ||||||||||||||||||||
Sbjct: 529 ctttatcctggtattgatca 510
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>emb|AJ307586.1|PSY307586 Pinus sylvestris mRNA for superoxide dismutase (sod gene)
          Length = 1072

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 ctttatcctggtattgatca 425
           ||||||||||||||||||||
Sbjct: 696 ctttatcctggtattgatca 677



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 406 ctttatcctggtattgatca 425
           ||||||||||||||||||||
Sbjct: 563 ctttatcctggtattgatca 544
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>gb|AC080128.21| Homo sapiens 3 BAC RP11-404G16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181241

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    ttccaaataggtgctgtcaa 372
              ||||||||||||||||||||
Sbjct: 161977 ttccaaataggtgctgtcaa 161996
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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 598     tcctccctgcagtcaaacca 617
               ||||||||||||||||||||
Sbjct: 1035294 tcctccctgcagtcaaacca 1035275
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>gb|AC027189.5| Homo sapiens chromosome 8, clone RP11-129J1, complete sequence
          Length = 157325

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 625   cagaaaaagcaagcctaaat 644
             ||||||||||||||||||||
Sbjct: 94695 cagaaaaagcaagcctaaat 94676
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>ref|NM_077900.1| Caenorhabditis elegans F55F3.4 (F55F3.4) mRNA, complete cds
          Length = 2646

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 618 gcaccagcagaaaaagcaag 637
           ||||||||||||||||||||
Sbjct: 40  gcaccagcagaaaaagcaag 21
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>emb|Z81550.1|CEF55F3 Caenorhabditis elegans Cosmid F55F3, complete sequence
          Length = 42521

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 618   gcaccagcagaaaaagcaag 637
             ||||||||||||||||||||
Sbjct: 37455 gcaccagcagaaaaagcaag 37436
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>gb|AC120438.9| Mus musculus chromosome 7, clone RP24-572G2, complete sequence
          Length = 169442

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    atttttcatcactgtgcttt 494
              ||||||||||||||||||||
Sbjct: 127655 atttttcatcactgtgcttt 127674
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>dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT06K23, TM0391,
             complete sequence
          Length = 98505

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 454   tttttacagcttcaaccgataatt 477
             ||||||||| ||||||||||||||
Sbjct: 77574 tttttacagattcaaccgataatt 77551
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>dbj|AP006129.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT27K02, TM0225,
             complete sequence
          Length = 70805

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 454   tttttacagcttcaaccgataatt 477
             ||||||||| ||||||||||||||
Sbjct: 34489 tttttacagattcaaccgataatt 34466
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>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 679    gtacttgaccagaagcaaat 698
              ||||||||||||||||||||
Sbjct: 761198 gtacttgaccagaagcaaat 761179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,287,200
Number of Sequences: 3902068
Number of extensions: 6287200
Number of successful extensions: 120183
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119902
Number of HSP's gapped (non-prelim): 279
length of query: 702
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 679
effective length of database: 17,143,297,704
effective search space: 11640299141016
effective search space used: 11640299141016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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