ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31a17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosom... 46 0.15
2gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome ... 46 0.15
3gb|AC154589.3| Mus musculus BAC clone RP23-367D5 from chromosome... 46 0.15
4gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome... 46 0.15
5ref|XM_638879.1| Dictyostelium discoideum hypothetical protein (... 42 2.4
6ref|XM_812209.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.4
7emb|BX927068.14| Zebrafish DNA sequence from clone CH211-152F2 i... 42 2.4
8emb|AL357510.17| Human DNA sequence from clone RP11-195F21 on ch... 42 2.4
9emb|AL356318.7| Human DNA sequence from clone RP11-161E22 on chr... 42 2.4
10gb|AF233734.1|AF233734 Helicoverpa zea HzC4 chymotrypsinogen gen... 42 2.4
11gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 42 2.4
12gb|AC002378.1|AC002378 Human PAC clone RP3-438O4 from 22q12.1-qt... 42 2.4
13ref|NM_193362.1| Oryza sativa (japonica cultivar-group), predic... 40 9.5
14ref|NM_186495.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.5
15gb|AC111620.5| Rattus norvegicus 2 BAC CH230-123K4 (Children's H... 40 9.5
16gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromo... 40 9.5
17gb|AC146229.2| Pan troglodytes BAC clone RP43-33B3 from 7, compl... 40 9.5
18gb|AC073141.4| Homo sapiens BAC clone RP11-733D19 from 7, comple... 40 9.5
19gb|AC093536.4| Homo sapiens chromosome 16 clone RP11-744D14, com... 40 9.5
20emb|CR354398.17| Zebrafish DNA sequence from clone CH211-142C14 ... 40 9.5
21gb|AC132594.3| Mus musculus BAC clone RP24-222P6 from chromosome... 40 9.5
22gb|AC126680.4| Mus musculus BAC clone RP24-347B21 from chromosom... 40 9.5
23emb|AL355343.18| Human DNA sequence from clone RP11-455I14 on ch... 40 9.5
24emb|AL137058.8| Human DNA sequence from clone RP11-78J21 on chro... 40 9.5
25emb|AL645751.12| Mouse DNA sequence from clone RP23-396K15 on ch... 40 9.5
26emb|AL590380.9| Mouse DNA sequence from clone RP23-146D23 on chr... 40 9.5
27gb|AC151908.8| Mus musculus BAC clone RP23-109A22 from chromosom... 40 9.5
28gb|AC148188.3| Saimiri boliviensis boliviensis clone CH254-64N20... 40 9.5
29gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, comp... 40 9.5
30gb|AC012177.6| Homo sapiens chromosome 16 clone RP11-231O22, com... 40 9.5
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
34dbj|AB044334.2| Mus musculus CAST gene for calpastatin type I, I... 40 9.5
35gb|AF180942.1|ATRPP5LE2 Arabidopsis thaliana RPP5 disease resist... 40 9.5
36gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, comple... 40 9.5
37gb|AC019106.3| Homo sapiens BAC clone RP11-479L11 from 2, comple... 40 9.5
38dbj|AP004614.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
39dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
40gb|AC021068.17|AC021068 Homo sapiens 3 BAC RP11-48O22 (Roswell P... 40 9.5
41dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
42dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
43dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
44dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
45dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
46dbj|AP003931.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
47dbj|BS000001.1| Pan troglodytes chromosome 22 clone:PTB-520F08, ... 40 9.5
48gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, comple... 40 9.5
49gb|AC122236.5| Mus musculus BAC clone RP23-141I22 from 8, comple... 40 9.5
50emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003 40 9.5
51dbj|AP005058.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 9.5
52gb|U23519.2| Caenorhabditis elegans cosmid F26G1, complete sequence 40 9.5
53dbj|AP001465.1| Homo sapiens genomic DNA, chromosome 21q11.1, cl... 40 9.5 
>gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosome 6, complete sequence
          Length = 186704

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 637    atgtagtaaaatgatagcagcat 659
              |||||||||||||||||||||||
Sbjct: 166148 atgtagtaaaatgatagcagcat 166170
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>gb|AC127346.4| Mus musculus BAC clone RP23-54F4 from chromosome 6, complete sequence
          Length = 203187

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 637   atgtagtaaaatgatagcagcat 659
             |||||||||||||||||||||||
Sbjct: 26859 atgtagtaaaatgatagcagcat 26881
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>gb|AC154589.3| Mus musculus BAC clone RP23-367D5 from chromosome 14, complete sequence
          Length = 205889

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 266   ctgtgcagtgtagtggtcaaaagaagcatacaaaa 300
             ||||| ||||| ||||||||||||||||| |||||
Sbjct: 18871 ctgtggagtgttgtggtcaaaagaagcattcaaaa 18905
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>gb|AC159006.2| Mus musculus BAC clone RP23-36P21 from chromosome 14, complete sequence
          Length = 245591

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 266    ctgtgcagtgtagtggtcaaaagaagcatacaaaa 300
              ||||| ||||| ||||||||||||||||| |||||
Sbjct: 117942 ctgtggagtgttgtggtcaaaagaagcattcaaaa 117976
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>ref|XM_638879.1| Dictyostelium discoideum hypothetical protein (DDB0167846), partial
           mRNA
          Length = 585

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 450 tctacacattacatatttcaaatat 474
           ||||||||||| |||||||||||||
Sbjct: 455 tctacacattagatatttcaaatat 479
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>ref|XM_812209.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053504057.97) partial mRNA
          Length = 1095

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 572 gaagaagtcgtccacaattcc 592
           |||||||||||||||||||||
Sbjct: 54  gaagaagtcgtccacaattcc 34
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>emb|BX927068.14| Zebrafish DNA sequence from clone CH211-152F2 in linkage group 1,
             complete sequence
          Length = 150851

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 634   tacatgtagtaaaatgatagcagca 658
             |||||| ||||||||||||||||||
Sbjct: 19981 tacatgaagtaaaatgatagcagca 19957
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>emb|AL357510.17| Human DNA sequence from clone RP11-195F21 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 121493

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   tttcaaaaagaaaaattggat 233
             |||||||||||||||||||||
Sbjct: 72131 tttcaaaaagaaaaattggat 72111
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>emb|AL356318.7| Human DNA sequence from clone RP11-161E22 on chromosome 9 Contains part
             of the TRPM3 gene for transient receptor potential cation
             channel subfamily M, member 3 (MLSN2, LTRPC3, FLJ11726)
             and a pseudogene similar to part of CDC91 cell division
             cycle 91-like 1 (S. cerevisiae) (CDC91L1), complete
             sequence
          Length = 141339

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     tgatttgaacatctaatctga 27
             |||||||||||||||||||||
Sbjct: 36474 tgatttgaacatctaatctga 36494
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>gb|AF233734.1|AF233734 Helicoverpa zea HzC4 chymotrypsinogen gene, complete cds
          Length = 1271

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 455 acattacatatttcaaatatc 475
           |||||||||||||||||||||
Sbjct: 616 acattacatatttcaaatatc 596
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>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
             complete sequence
          Length = 333321

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 450   tctacacattacatatttcaaatat 474
             ||||||||||| |||||||||||||
Sbjct: 98399 tctacacattagatatttcaaatat 98423
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>gb|AC002378.1|AC002378 Human PAC clone RP3-438O4 from 22q12.1-qter, complete sequence
          Length = 77516

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 264   tcctgtgcagtgtagtggtca 284
             |||||||||||||||||||||
Sbjct: 48123 tcctgtgcagtgtagtggtca 48103
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>ref|NM_193362.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2538

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 553  cagcccatgtatcctcccag 572
            ||||||||||||||||||||
Sbjct: 1164 cagcccatgtatcctcccag 1183
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>ref|NM_186495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2469

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 553 cagcccatgtatcctcccag 572
           ||||||||||||||||||||
Sbjct: 936 cagcccatgtatcctcccag 955
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>gb|AC111620.5| Rattus norvegicus 2 BAC CH230-123K4 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 59971

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   gcacaatttcaaaaagaaaa 226
             ||||||||||||||||||||
Sbjct: 34207 gcacaatttcaaaaagaaaa 34188
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>gb|AC182587.5| Pan troglodytes BAC clone CH251-207G3 from chromosome 18, complete
             sequence
          Length = 195115

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 496   aaggcaattcagagcagagtacag 519
             ||||||||||| ||||||||||||
Sbjct: 97898 aaggcaattcaaagcagagtacag 97921
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>gb|AC146229.2| Pan troglodytes BAC clone RP43-33B3 from 7, complete sequence
          Length = 186222

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   catatttcaaatatctggaa 480
             ||||||||||||||||||||
Sbjct: 50664 catatttcaaatatctggaa 50683
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>gb|AC073141.4| Homo sapiens BAC clone RP11-733D19 from 7, complete sequence
          Length = 151073

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   catatttcaaatatctggaa 480
             ||||||||||||||||||||
Sbjct: 49907 catatttcaaatatctggaa 49926
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>gb|AC093536.4| Homo sapiens chromosome 16 clone RP11-744D14, complete sequence
          Length = 199655

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 635    acatgtagtaaaatgatagc 654
              ||||||||||||||||||||
Sbjct: 182606 acatgtagtaaaatgatagc 182587
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>emb|CR354398.17| Zebrafish DNA sequence from clone CH211-142C14 in linkage group 7,
              complete sequence
          Length = 180088

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 458    ttacatatttcaaatatctggaat 481
              ||||||||||||||||| ||||||
Sbjct: 100563 ttacatatttcaaatatttggaat 100540
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>gb|AC132594.3| Mus musculus BAC clone RP24-222P6 from chromosome 7, complete sequence
          Length = 162814

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 270    gcagtgtagtggtcaaaagaagca 293
              |||||||||||||| |||||||||
Sbjct: 108972 gcagtgtagtggtctaaagaagca 108949
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>gb|AC126680.4| Mus musculus BAC clone RP24-347B21 from chromosome 7, complete sequence
          Length = 161973

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 270   gcagtgtagtggtcaaaagaagca 293
             |||||||||||||| |||||||||
Sbjct: 44966 gcagtgtagtggtctaaagaagca 44943
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>emb|AL355343.18| Human DNA sequence from clone RP11-455I14 on chromosome 6 Contains the
             5' end of the TIAM2 gene for T-cell lymphoma invasion and
             metastasis 2 (SIF and Tiam 1-like exchange factor (STEF)),
             complete sequence
          Length = 179262

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   caagttcattctgatacaac 148
             ||||||||||||||||||||
Sbjct: 90100 caagttcattctgatacaac 90119
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>emb|AL137058.8| Human DNA sequence from clone RP11-78J21 on chromosome 13q32.2-33.3
             Contains 2 novel genes, a pseudogene similar to part of
             TPTE and PTEN homologous inositol lipid phosphatase
             (TPIP), a pseudogene similar to part of mitochondrial
             ribosomal protein S31 (MRPS31), the gene for a novel
             protein similar to heterogeneous nuclear ribonucleoprotein
             A1 (HNRPA1) and 3 CpG islands, complete sequence
          Length = 163390

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 285   aaagaagcatacaaaaaagagctc 308
             |||||||||||||||||| |||||
Sbjct: 39018 aaagaagcatacaaaaaaaagctc 38995
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>emb|AL645751.12| Mouse DNA sequence from clone RP23-396K15 on chromosome 11 Contains the
              5' end of the Gabrg2 gene for gamma-aminobutyric acid
              (GABA-A) receptor, subunit gamma 2, the 3' end of the
              Gabra1 gene for gamma-aminobutyric acid (GABA-A) receptor,
              subunit alpha 1 and the 3' end of a novel gene, complete
              sequence
          Length = 186884

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 522    aatgtctaaataaagcatat 541
              ||||||||||||||||||||
Sbjct: 103726 aatgtctaaataaagcatat 103707
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>emb|AL590380.9| Mouse DNA sequence from clone RP23-146D23 on chromosome 2, complete
             sequence
          Length = 197008

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   atttcaaaaagaaaaattgg 231
             ||||||||||||||||||||
Sbjct: 65096 atttcaaaaagaaaaattgg 65115
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>gb|AC151908.8| Mus musculus BAC clone RP23-109A22 from chromosome 8, complete sequence
          Length = 233606

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    cacaatttcaaaaagaaaaa 227
              ||||||||||||||||||||
Sbjct: 125993 cacaatttcaaaaagaaaaa 125974
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>gb|AC148188.3| Saimiri boliviensis boliviensis clone CH254-64N20, complete sequence
          Length = 194092

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   catatttcaaatatctggaa 480
             ||||||||||||||||||||
Sbjct: 26193 catatttcaaatatctggaa 26212
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>gb|AC092501.2| Homo sapiens chromosome 3 clone RP11-139C14, complete sequence
          Length = 159331

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    aaatgtctaaataaagcata 540
              ||||||||||||||||||||
Sbjct: 141484 aaatgtctaaataaagcata 141465
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>gb|AC012177.6| Homo sapiens chromosome 16 clone RP11-231O22, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 635    acatgtagtaaaatgatagc 654
              ||||||||||||||||||||
Sbjct: 161674 acatgtagtaaaatgatagc 161693
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 553     cagcccatgtatcctcccag 572
               ||||||||||||||||||||
Sbjct: 6245753 cagcccatgtatcctcccag 6245734
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 553      cagcccatgtatcctcccag 572
                ||||||||||||||||||||
Sbjct: 28739440 cagcccatgtatcctcccag 28739421



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 553      cagcccatgtatcctcccag 572
                ||||||||||||||||||||
Sbjct: 20215369 cagcccatgtatcctcccag 20215350
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 553      cagcccatgtatcctcccag 572
                ||||||||||||||||||||
Sbjct: 20389116 cagcccatgtatcctcccag 20389097
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>dbj|AB044334.2| Mus musculus CAST gene for calpastatin type I, II, III, IV-L, IV-S,
            complete cds
          Length = 34223

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  atgtacactttgatacttgt 345
            ||||||||||||||||||||
Sbjct: 6990 atgtacactttgatacttgt 6971
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>gb|AF180942.1|ATRPP5LE2 Arabidopsis thaliana RPP5 disease resistance locus, main contig
          Length = 91660

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   gcatatggagacacatgcag 555
             ||||||||||||||||||||
Sbjct: 22316 gcatatggagacacatgcag 22297
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>gb|AC016720.9| Homo sapiens BAC clone RP11-326G23 from 2, complete sequence
          Length = 154318

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 491    tcctgaaggcaattcagagcagag 514
              |||||||| |||||||||||||||
Sbjct: 140458 tcctgaagacaattcagagcagag 140481
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>gb|AC019106.3| Homo sapiens BAC clone RP11-479L11 from 2, complete sequence
          Length = 198540

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  aaagaagcatacaaaaaaga 304
            ||||||||||||||||||||
Sbjct: 8434 aaagaagcatacaaaaaaga 8415
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>dbj|AP004614.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0042P21
          Length = 141230

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   cagcccatgtatcctcccag 572
             ||||||||||||||||||||
Sbjct: 45231 cagcccatgtatcctcccag 45212
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>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0026J14
          Length = 163496

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    cagcccatgtatcctcccag 572
              ||||||||||||||||||||
Sbjct: 155149 cagcccatgtatcctcccag 155130
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>gb|AC021068.17|AC021068 Homo sapiens 3 BAC RP11-48O22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159259

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   aaatgtctaaataaagcata 540
             ||||||||||||||||||||
Sbjct: 52203 aaatgtctaaataaagcata 52184
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>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0007G12
          Length = 111819

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   cagcccatgtatcctcccag 572
             ||||||||||||||||||||
Sbjct: 81369 cagcccatgtatcctcccag 81350
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>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1212_H09
          Length = 129040

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   cagcccatgtatcctcccag 572
             ||||||||||||||||||||
Sbjct: 28879 cagcccatgtatcctcccag 28860
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>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0502B12
          Length = 197160

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    cagcccatgtatcctcccag 572
              ||||||||||||||||||||
Sbjct: 144712 cagcccatgtatcctcccag 144693
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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   cagcccatgtatcctcccag 572
             ||||||||||||||||||||
Sbjct: 47215 cagcccatgtatcctcccag 47196
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    cagcccatgtatcctcccag 572
              ||||||||||||||||||||
Sbjct: 140006 cagcccatgtatcctcccag 139987
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>dbj|AP003931.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1664_D08
          Length = 128553

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 553    cagcccatgtatcctcccag 572
              ||||||||||||||||||||
Sbjct: 120308 cagcccatgtatcctcccag 120289
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>dbj|BS000001.1| Pan troglodytes chromosome 22 clone:PTB-520F08, map 22, complete
            sequences
          Length = 99407

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 496  aaggcaattcagagcagagtacag 519
            ||||||||||| ||||||||||||
Sbjct: 5901 aaggcaattcaaagcagagtacag 5878
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>gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, complete sequence
          Length = 161998

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   atgtacactttgatacttgt 345
             ||||||||||||||||||||
Sbjct: 83529 atgtacactttgatacttgt 83548
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>gb|AC122236.5| Mus musculus BAC clone RP23-141I22 from 8, complete sequence
          Length = 214447

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 208    cacaatttcaaaaagaaaaa 227
              ||||||||||||||||||||
Sbjct: 162059 cacaatttcaaaaagaaaaa 162078
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>emb|AL163203.2|HS21C003 Homo sapiens chromosome 21 segment HS21C003
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 496    aaggcaattcagagcagagtacag 519
              ||||||||||| ||||||||||||
Sbjct: 248632 aaggcaattcaaagcagagtacag 248609
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>dbj|AP005058.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-19M12, complete
             sequence
          Length = 179546

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 496   aaggcaattcagagcagagtacag 519
             ||||||||||| ||||||||||||
Sbjct: 55032 aaggcaattcaaagcagagtacag 55055
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>gb|U23519.2| Caenorhabditis elegans cosmid F26G1, complete sequence
          Length = 37754

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   tttcaaaaagaaaaattgga 232
             ||||||||||||||||||||
Sbjct: 29981 tttcaaaaagaaaaattgga 30000
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>dbj|AP001465.1| Homo sapiens genomic DNA, chromosome 21q11.1, clone:B663H15, centromere
             region, complete sequence
          Length = 104785

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 496   aaggcaattcagagcagagtacag 519
             ||||||||||| ||||||||||||
Sbjct: 11117 aaggcaattcaaagcagagtacag 11094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,945,759
Number of Sequences: 3902068
Number of extensions: 7945759
Number of successful extensions: 142411
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142093
Number of HSP's gapped (non-prelim): 318
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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