ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags31a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DET1_LYCES (Q9ZNU6) Light-mediated development protein DET1 (Dee... 245 1e-64
2DET1_ARATH (P48732) Light-mediated development protein DET1 (DEE... 221 2e-57
3DET1_MOUSE (Q9D0A0) DET1 homolog (De-etiolated-1 homolog) 102 8e-22
4DET1_HUMAN (Q7L5Y6) DET1 homolog (De-etiolated-1 homolog) 102 8e-22
5RW1_HUMAN (Q92545) RW1 protein (Fragment) 32 1.7
6RW1_MOUSE (O70472) RW1 protein 32 2.2
7EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 ... 30 6.5
8YDT2_SCHPO (O14207) Hypothetical protein C6B12.02c in chromosome I 30 8.4

>DET1_LYCES (Q9ZNU6) Light-mediated development protein DET1 (Deetiolated1|
           homolog) (tDET1) (High pigmentation protein 2) (Protein
           dark green)
          Length = 523

 Score =  245 bits (625), Expect = 1e-64
 Identities = 116/168 (69%), Positives = 144/168 (85%), Gaps = 1/168 (0%)
 Frame = -2

Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLRTIKNKASSSSQFVK 484
           YQNS++ LY LFE + DHFH + ++SLH  F+SSHSN++HAL+QLR  KNKA++ SQFVK
Sbjct: 356 YQNSADELYFLFELFSDHFHVSSKSSLHMNFMSSHSNNIHALEQLRCTKNKATNFSQFVK 415

Query: 483 KMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVVKFKI 304
           KMMASLP +CQSQSPSPYFD S+FR+DEKLISAIDRHR  T+HPIKFIS RQPN++KFK+
Sbjct: 416 KMMASLPCSCQSQSPSPYFDQSLFRFDEKLISAIDRHRQSTDHPIKFISRRQPNILKFKM 475

Query: 303 KPGSDSGASDSRAKRISSFLFHPYFPLALSIQQT-YMQPTVVNIHFRR 163
           KPG ++G++D R K+I SFLFHP  PLALS+QQT ++Q +VVNIHFRR
Sbjct: 476 KPGPEAGSTDGRTKKICSFLFHPILPLALSVQQTLFLQASVVNIHFRR 523



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>DET1_ARATH (P48732) Light-mediated development protein DET1 (DEETIOLATED1|
           protein)
          Length = 541

 Score =  221 bits (562), Expect = 2e-57
 Identities = 107/168 (63%), Positives = 135/168 (80%), Gaps = 1/168 (0%)
 Frame = -2

Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLRTIKNKASSSSQFVK 484
           YQNS+E LY LFE + DHF  +        F++SHSN+V+AL+QL+  KNK++S SQFVK
Sbjct: 375 YQNSAEDLYQLFEQFSDHFTVSSSTPFMN-FVTSHSNNVYALEQLKYTKNKSNSFSQFVK 433

Query: 483 KMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVVKFKI 304
           KM+ SLP++CQSQSPSPYFD S+FR+DEKLISA DRHR  +++PIKFIS RQP  +KFKI
Sbjct: 434 KMLLSLPFSCQSQSPSPYFDQSLFRFDEKLISAADRHRQSSDNPIKFISRRQPQTLKFKI 493

Query: 303 KPGSDSGASDSRAKRISSFLFHPYFPLALSIQQT-YMQPTVVNIHFRR 163
           KPG + G +D R+K+I SFLFHP+ PLA+SIQQT +M P+VVNIHFRR
Sbjct: 494 KPGPECGTADGRSKKICSFLFHPHLPLAISIQQTLFMPPSVVNIHFRR 541



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>DET1_MOUSE (Q9D0A0) DET1 homolog (De-etiolated-1 homolog)|
          Length = 550

 Score =  102 bits (255), Expect = 8e-22
 Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 4/170 (2%)
 Frame = -2

Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLR----TIKNKASSSS 496
           ++N+S+ L  LFE++ D F     +S  +   S+ SN+     Q R     I  K    +
Sbjct: 379 FENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINAKYGGHT 438

Query: 495 QFVKKMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVV 316
           + V++++  LP + QS S SPY DLS+F YD+K +S ++R + C +HPI+F + R   ++
Sbjct: 439 EAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYA-RDSGLL 497

Query: 315 KFKIKPGSDSGASDSRAKRISSFLFHPYFPLALSIQQTYMQPTVVNIHFR 166
           KF+I+ G      +   +R+ +F FHP+ P A+S+Q+T  +  VVN H R
Sbjct: 498 KFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAE-YVVNFHMR 546



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>DET1_HUMAN (Q7L5Y6) DET1 homolog (De-etiolated-1 homolog)|
          Length = 550

 Score =  102 bits (255), Expect = 8e-22
 Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 4/170 (2%)
 Frame = -2

Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLR----TIKNKASSSS 496
           ++N+S+ L  LFE++ D F     +S  +   S+ SN+     Q R     I  K    +
Sbjct: 379 FENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINAKYGGHT 438

Query: 495 QFVKKMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVV 316
           + V++++  LP + QS S SPY DLS+F YD+K +S ++R + C +HPI+F + R   ++
Sbjct: 439 EAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYA-RDSGLL 497

Query: 315 KFKIKPGSDSGASDSRAKRISSFLFHPYFPLALSIQQTYMQPTVVNIHFR 166
           KF+I+ G      +   +R+ +F FHP+ P A+S+Q+T  +  VVN H R
Sbjct: 498 KFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAE-YVVNFHMR 546



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>RW1_HUMAN (Q92545) RW1 protein (Fragment)|
          Length = 1805

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = -2

Query: 531  LRTIKNKASSSSQFVKKMMASLPY----TCQSQSPSPYFDLSIFRYDEKLISAI 382
            +R +K   +S S+FV  + ASLPY    TC    P P ++L+++     ++SA+
Sbjct: 1000 IRELKFITTSGSEFVFILNASLPYHMLATCAEALPRPNWELALYIIISGIMSAL 1053



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>RW1_MOUSE (O70472) RW1 protein|
          Length = 1829

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -2

Query: 531  LRTIKNKASSSSQFVKKMMASLPY----TCQSQSPSPYFDLSIFRYDEKLISAI 382
            +R +K   SS S+FV  + ASLPY     C    P P ++L+++     ++SA+
Sbjct: 1028 IRELKFVTSSGSEFVFVLNASLPYHMLAACAEALPRPNWELALYIIISGVMSAL 1081



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>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Anther-specific protein A6)
          Length = 478

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 522 IKNKASSSSQFVKKMMASLPYTCQSQS--PSPYFDLSIFRYDEKLISAIDRH 373
           I N A+ +   +KKM AS P    S+   P P F  S+F  ++K  S   RH
Sbjct: 296 ILNAATYNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNENQKSGSGTQRH 347



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>YDT2_SCHPO (O14207) Hypothetical protein C6B12.02c in chromosome I|
          Length = 1888

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -2

Query: 654  SSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLRTIKNKASSSSQFVK-KM 478
            SS+ L SLF HY     ++ Q+S      SS ++S+  ++  R + +     SQF   + 
Sbjct: 1488 SSQYLQSLFIHYLSSLLSSMQHSYETNGHSSDTHSLFVINSQRVVGDILQYCSQFANDRN 1547

Query: 477  MASLPYTCQS-QSPSP 433
            + +L Y   S + P P
Sbjct: 1548 LPALRYFMDSTKFPQP 1563


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,431,501
Number of Sequences: 219361
Number of extensions: 1935379
Number of successful extensions: 4713
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4703
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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