| Clone Name | rbags31a08 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | DET1_LYCES (Q9ZNU6) Light-mediated development protein DET1 (Dee... | 245 | 1e-64 | 2 | DET1_ARATH (P48732) Light-mediated development protein DET1 (DEE... | 221 | 2e-57 | 3 | DET1_MOUSE (Q9D0A0) DET1 homolog (De-etiolated-1 homolog) | 102 | 8e-22 | 4 | DET1_HUMAN (Q7L5Y6) DET1 homolog (De-etiolated-1 homolog) | 102 | 8e-22 | 5 | RW1_HUMAN (Q92545) RW1 protein (Fragment) | 32 | 1.7 | 6 | RW1_MOUSE (O70472) RW1 protein | 32 | 2.2 | 7 | EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 ... | 30 | 6.5 | 8 | YDT2_SCHPO (O14207) Hypothetical protein C6B12.02c in chromosome I | 30 | 8.4 |
|---|
>DET1_LYCES (Q9ZNU6) Light-mediated development protein DET1 (Deetiolated1| homolog) (tDET1) (High pigmentation protein 2) (Protein dark green) Length = 523 Score = 245 bits (625), Expect = 1e-64 Identities = 116/168 (69%), Positives = 144/168 (85%), Gaps = 1/168 (0%) Frame = -2 Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLRTIKNKASSSSQFVK 484 YQNS++ LY LFE + DHFH + ++SLH F+SSHSN++HAL+QLR KNKA++ SQFVK Sbjct: 356 YQNSADELYFLFELFSDHFHVSSKSSLHMNFMSSHSNNIHALEQLRCTKNKATNFSQFVK 415 Query: 483 KMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVVKFKI 304 KMMASLP +CQSQSPSPYFD S+FR+DEKLISAIDRHR T+HPIKFIS RQPN++KFK+ Sbjct: 416 KMMASLPCSCQSQSPSPYFDQSLFRFDEKLISAIDRHRQSTDHPIKFISRRQPNILKFKM 475 Query: 303 KPGSDSGASDSRAKRISSFLFHPYFPLALSIQQT-YMQPTVVNIHFRR 163 KPG ++G++D R K+I SFLFHP PLALS+QQT ++Q +VVNIHFRR Sbjct: 476 KPGPEAGSTDGRTKKICSFLFHPILPLALSVQQTLFLQASVVNIHFRR 523
>DET1_ARATH (P48732) Light-mediated development protein DET1 (DEETIOLATED1| protein) Length = 541 Score = 221 bits (562), Expect = 2e-57 Identities = 107/168 (63%), Positives = 135/168 (80%), Gaps = 1/168 (0%) Frame = -2 Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLRTIKNKASSSSQFVK 484 YQNS+E LY LFE + DHF + F++SHSN+V+AL+QL+ KNK++S SQFVK Sbjct: 375 YQNSAEDLYQLFEQFSDHFTVSSSTPFMN-FVTSHSNNVYALEQLKYTKNKSNSFSQFVK 433 Query: 483 KMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVVKFKI 304 KM+ SLP++CQSQSPSPYFD S+FR+DEKLISA DRHR +++PIKFIS RQP +KFKI Sbjct: 434 KMLLSLPFSCQSQSPSPYFDQSLFRFDEKLISAADRHRQSSDNPIKFISRRQPQTLKFKI 493 Query: 303 KPGSDSGASDSRAKRISSFLFHPYFPLALSIQQT-YMQPTVVNIHFRR 163 KPG + G +D R+K+I SFLFHP+ PLA+SIQQT +M P+VVNIHFRR Sbjct: 494 KPGPECGTADGRSKKICSFLFHPHLPLAISIQQTLFMPPSVVNIHFRR 541
>DET1_MOUSE (Q9D0A0) DET1 homolog (De-etiolated-1 homolog)| Length = 550 Score = 102 bits (255), Expect = 8e-22 Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 4/170 (2%) Frame = -2 Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLR----TIKNKASSSS 496 ++N+S+ L LFE++ D F +S + S+ SN+ Q R I K + Sbjct: 379 FENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINAKYGGHT 438 Query: 495 QFVKKMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVV 316 + V++++ LP + QS S SPY DLS+F YD+K +S ++R + C +HPI+F + R ++ Sbjct: 439 EAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYA-RDSGLL 497 Query: 315 KFKIKPGSDSGASDSRAKRISSFLFHPYFPLALSIQQTYMQPTVVNIHFR 166 KF+I+ G + +R+ +F FHP+ P A+S+Q+T + VVN H R Sbjct: 498 KFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAE-YVVNFHMR 546
>DET1_HUMAN (Q7L5Y6) DET1 homolog (De-etiolated-1 homolog)| Length = 550 Score = 102 bits (255), Expect = 8e-22 Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 4/170 (2%) Frame = -2 Query: 663 YQNSSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLR----TIKNKASSSS 496 ++N+S+ L LFE++ D F +S + S+ SN+ Q R I K + Sbjct: 379 FENTSDELLELFENFCDLFRNATLHSEVQFPCSASSNNFARQIQRRFKDTIINAKYGGHT 438 Query: 495 QFVKKMMASLPYTCQSQSPSPYFDLSIFRYDEKLISAIDRHRHCTEHPIKFISVRQPNVV 316 + V++++ LP + QS S SPY DLS+F YD+K +S ++R + C +HPI+F + R ++ Sbjct: 439 EAVRRLLGQLPISAQSYSGSPYLDLSLFSYDDKWVSVMERPKTCGDHPIRFYA-RDSGLL 497 Query: 315 KFKIKPGSDSGASDSRAKRISSFLFHPYFPLALSIQQTYMQPTVVNIHFR 166 KF+I+ G + +R+ +F FHP+ P A+S+Q+T + VVN H R Sbjct: 498 KFEIQAGLLGRPINHTVRRLVAFTFHPFEPFAISVQRTNAE-YVVNFHMR 546
>RW1_HUMAN (Q92545) RW1 protein (Fragment)| Length = 1805 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%) Frame = -2 Query: 531 LRTIKNKASSSSQFVKKMMASLPY----TCQSQSPSPYFDLSIFRYDEKLISAI 382 +R +K +S S+FV + ASLPY TC P P ++L+++ ++SA+ Sbjct: 1000 IRELKFITTSGSEFVFILNASLPYHMLATCAEALPRPNWELALYIIISGIMSAL 1053
>RW1_MOUSE (O70472) RW1 protein| Length = 1829 Score = 31.6 bits (70), Expect = 2.2 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Frame = -2 Query: 531 LRTIKNKASSSSQFVKKMMASLPY----TCQSQSPSPYFDLSIFRYDEKLISAI 382 +R +K SS S+FV + ASLPY C P P ++L+++ ++SA+ Sbjct: 1028 IRELKFVTSSGSEFVFVLNASLPYHMLAACAEALPRPNWELALYIIISGVMSAL 1081
>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Anther-specific protein A6) Length = 478 Score = 30.0 bits (66), Expect = 6.5 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -2 Query: 522 IKNKASSSSQFVKKMMASLPYTCQSQS--PSPYFDLSIFRYDEKLISAIDRH 373 I N A+ + +KKM AS P S+ P P F S+F ++K S RH Sbjct: 296 ILNAATYNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNENQKSGSGTQRH 347
>YDT2_SCHPO (O14207) Hypothetical protein C6B12.02c in chromosome I| Length = 1888 Score = 29.6 bits (65), Expect = 8.4 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = -2 Query: 654 SSEXLYSLFEHYYDHFHANPQNSLHEKFISSHSNSVHALDQLRTIKNKASSSSQFVK-KM 478 SS+ L SLF HY ++ Q+S SS ++S+ ++ R + + SQF + Sbjct: 1488 SSQYLQSLFIHYLSSLLSSMQHSYETNGHSSDTHSLFVINSQRVVGDILQYCSQFANDRN 1547 Query: 477 MASLPYTCQS-QSPSP 433 + +L Y S + P P Sbjct: 1548 LPALRYFMDSTKFPQP 1563 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,431,501 Number of Sequences: 219361 Number of extensions: 1935379 Number of successful extensions: 4713 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4703 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)