>SYP61_ARATH (Q946Y7) Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1)|
          Length = 245

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = -2

Query: 223 ETTSYRLDFXQKRVAMVLKKASLKGQIMMI 134
           ++T  RL+F QK+V MV+KKA  KGQ+MMI
Sbjct: 199 DSTKNRLEFVQKKVGMVMKKAGAKGQMMMI 228

>FAF1_YEAST (P40546) Protein FAF1 (Forty S assembly factor)|
          Length = 346

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 35  LYTSWQILTQLKLHLSSQEYQNEKDDEKNHQESYHHDLPFQAGLL*NH 178
           L  S + LTQ+   L S E + EK+DE    E+  +DL  Q  L  +H
Sbjct: 116 LLRSGKTLTQINKKLESTEAKEEKEDETLEAENLQNDLELQQFLRESH 163

>RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 612

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +2

Query: 50  QILTQLKLHLSSQ---EYQNEKDDEKNHQESYHHD 145
           +I     +H+ S+   E QN ++DE+N+QE +  D
Sbjct: 174 EIFPPTAIHIGSELLDEQQNNEEDEENNQEDHEDD 208

>RN113_CAEEL (O17917) Putative RING finger protein 113 homolog|
          Length = 384

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
 Frame = +2

Query: 32  VLYTSWQILTQLKLHLSSQEYQNEK--------DDEKNHQ--ESYHHD 145
           ++ T+ ++LT LK     Q+ + EK        DDEK H+  + +HHD
Sbjct: 285 IMNTAKELLTYLKRKKQQQKQEAEKQEEEKDSDDDEKPHECDDHHHHD 332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,601,191
Number of Sequences: 219361
Number of extensions: 332137
Number of successful extensions: 1114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)