ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags30l06 |
|---|---|
| Clone Library Name | barley_pub |
>CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 51.2 bits (121), Expect = 9e-07 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 NEIQE LGRSY P ++DE++L ELDAL ++ L + + LD + PA Sbjct: 143 NEIQEALGRSYGTP-ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPA 191 Query: 233 APSGHAAVPANRQQE-----DEMGLPTVP 162 P G VP + + + DE GLP +P Sbjct: 192 IPEG---VPTDTKNKDGVLVDEFGLPQIP 217
>CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) (SNF7 domain-containing protein 2) Length = 219 Score = 51.2 bits (121), Expect = 9e-07 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 NEIQE LGRSY P ++DE++L ELDAL ++ L + + LD + PA Sbjct: 143 NEIQEALGRSYGTP-ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPA 191 Query: 233 APSGHAAVPANRQQE-----DEMGLPTVP 162 P G VP + + + DE GLP +P Sbjct: 192 IPEG---VPTDTKNKDGVLVDEFGLPQIP 217
>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 49.7 bits (117), Expect = 3e-06 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 5/89 (5%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 NEIQE L RSY P +IDE++L ELDAL ++ L D + LD + PA Sbjct: 143 NEIQEALSRSYGTP-EIDEDDLEAELDALGDEL----------LLDDDTSYLDEAASAPA 191 Query: 233 APSGHAAVPANRQQE-----DEMGLPTVP 162 P G VP + + + DE GLP +P Sbjct: 192 IPEG---VPNDSKNKDGVLVDEFGLPQIP 217
>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 49.7 bits (117), Expect = 3e-06 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 5/89 (5%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 NEIQE L RSY P +IDE++L ELDAL ++ L D + LD + PA Sbjct: 143 NEIQEALSRSYGTP-EIDEDDLEAELDALGDEL----------LLDDDTSYLDEAASAPA 191 Query: 233 APSGHAAVPANRQQE-----DEMGLPTVP 162 P G VP + + + DE GLP +P Sbjct: 192 IPEG---VPNDSKNKDGVLVDEFGLPQIP 217
>CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 48.9 bits (115), Expect = 5e-06 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 5/89 (5%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 NEIQE L RSY P ++DE++L ELDAL ++ L + + LD + PA Sbjct: 143 NEIQEALSRSYGTP-ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPA 191 Query: 233 APSGHAAVPANRQQE-----DEMGLPTVP 162 P G VP + + + DE GLP +P Sbjct: 192 IPEG---VPTDTKNKDGVLVDEFGLPQIP 217
>CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) (Vacuolar protein sorting 60) (Vps60) (hVps60) (SNF7 domain-containing protein 2) Length = 219 Score = 48.9 bits (115), Expect = 5e-06 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 5/89 (5%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 NEIQE L RSY P ++DE++L ELDAL ++ L + + LD + PA Sbjct: 143 NEIQEALSRSYGTP-ELDEDDLEAELDALGDEL----------LADEDSSYLDEAASAPA 191 Query: 233 APSGHAAVPANRQQE-----DEMGLPTVP 162 P G VP + + + DE GLP +P Sbjct: 192 IPEG---VPTDTKNKDGVLVDEFGLPQIP 217
>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 220 Score = 48.9 bits (115), Expect = 5e-06 Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 NE+QE L RSY P +IDE++L ELDAL ++ L D + LD + PA Sbjct: 143 NEVQEALSRSYGTP-EIDEDDLEAELDALGDEL----------LLDDDNSYLDEASSAPA 191 Query: 233 APSGHAAVPANRQQE------DEMGLPTVP 162 P G P +R DE GLP +P Sbjct: 192 IPEG---APGDRTTNRDGVLVDEFGLPQIP 218
>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a| (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog associated with Alix-2) Length = 222 Score = 38.9 bits (89), Expect = 0.005 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAA 231 +I + + R DD+DE+EL+ EL+ LE + + L + + + + LP+ Sbjct: 141 QISDAISRPMGFGDDVDEDELLEELEELEQE------ELAQELLNVGDKEEEPSVKLPSV 194 Query: 230 PSGH-AAVPANRQQEDEMGL 174 PS H A PA + EDE L Sbjct: 195 PSTHLPAGPAPKVDEDEEAL 214
>VPS20_YEAST (Q04272) Vacuolar protein sorting protein 20 (Amino acid| sensor-independent protein 10) (Charged multivesicular body protein 6) Length = 220 Score = 37.0 bits (84), Expect = 0.018 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = -3 Query: 413 NEIQETLGRSY----NVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSEL 246 NEI ETL RS N DD+D+E LDALE++++ P + K ++ S Sbjct: 137 NEINETLSRSLVGTSNYEDDLDKE-----LDALESELN------PEKMNNAKVANMPSTE 185 Query: 245 NLPAAPSGHAAVPANRQQ 192 LP+ P G R++ Sbjct: 186 GLPSLPQGEQTEQKEREE 203
>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein| sorting-associated protein VPS32) Length = 226 Score = 34.7 bits (78), Expect = 0.089 Identities = 25/80 (31%), Positives = 35/80 (43%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 +EI E + R + +DE+EL EL LEA+ + Q K + E LP Sbjct: 139 DEISEAISRPVG-NEFVDEDELDEELKELEAEAKEQEQEHRVPAQKAKPQPVSREEELPQ 197 Query: 233 APSGHAAVPANRQQEDEMGL 174 PS + P + EDE L Sbjct: 198 FPSVNKKAPVVEEDEDEEAL 217
>CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) (Vacuolar protein sorting 7-3) (SNF7-3) (hSnf7-3) (SNF7 homolog associated with Alix 3) Length = 233 Score = 33.1 bits (74), Expect = 0.26 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDALEAD-----------MDFESNSVPSYLQPDKET 264 EI E + DD DE+ELM EL+ LE + + S+S+P+ QP+++ Sbjct: 144 EISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNVPSSSLPA--QPNRKP 201 Query: 263 DLDSELNLPAAPSGHAAVPANRQQEDE 183 + S A AA ++ED+ Sbjct: 202 GMSS-----TARRSRAASSQRAEEEDD 223
>MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)| Length = 4910 Score = 32.3 bits (72), Expect = 0.44 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -3 Query: 368 DIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELN 243 DIDEEE++ ++DA +A+ D +S + E D ++EL+ Sbjct: 4547 DIDEEEMLSDIDAHDANNDVDSKKSGFIGKRKSEEDFENELS 4588
>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 224 Score = 32.0 bits (71), Expect = 0.58 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDAL---EADMDFESNSVPSYLQPDKETDLDSELNL 240 EI + + R ++ DE+ELM EL+ L E D D S P ++ L Sbjct: 142 EISDAISRPVGFGEEFDEDELMAELEELEQEELDKDLLQISGP------------EDVPL 189 Query: 239 PAAPSG-----HAAVPANRQQEDE 183 P PS A RQ+EDE Sbjct: 190 PNVPSNPLPKKTAVAQKKRQEEDE 213
>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60| Length = 262 Score = 32.0 bits (71), Expect = 0.58 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 18/73 (24%) Frame = -3 Query: 413 NEIQETLGRSYNVP--DDIDEEELMGELDALEADMDFE--------SNSVPSYLQP---- 276 +E+QE L + N DDI + EL ELDAL A DF N +PSYL Sbjct: 181 DELQEVLAMNNNSGELDDISDAELDAELDAL-AQEDFTLPTSENSLGNDMPSYLLGANAP 239 Query: 275 ----DKETDLDSE 249 D+E +LD+E Sbjct: 240 PAFIDEEPNLDTE 252
>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 222 Score = 31.6 bits (70), Expect = 0.76 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAA 231 EI + + + +D DE+ELM EL+ LE + + + N + +Q + L N+PAA Sbjct: 142 EISDAISKPVGFGEDFDEDELMAELEELEQE-ELDKNLLE--VQGPETVPLP---NVPAA 195 Query: 230 PSGHAAVPANRQQEDE 183 A P ++QE++ Sbjct: 196 --SLPAKPVKKKQEED 209
>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 222 Score = 31.2 bits (69), Expect = 0.99 Identities = 23/76 (30%), Positives = 40/76 (52%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAA 231 EI + + + +D DE+ELM EL+ LE + + + N + +Q + L N+PAA Sbjct: 142 EISDAISKPVGFGEDFDEDELMAELEELEQE-ELDKNLLE--VQGPETVPLP---NVPAA 195 Query: 230 PSGHAAVPANRQQEDE 183 A P ++QE++ Sbjct: 196 VL--PAKPVKKKQEED 209
>APEA_DICDI (P51173) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)| (Class II apurinic/apyrimidinic(AP)-endonuclease) Length = 361 Score = 31.2 bits (69), Expect = 0.99 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = -3 Query: 365 IDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQED 186 +DEEE++ + D E + E V + DK+ L + AP+ AA + ED Sbjct: 10 MDEEEILKKEDGSETTSEEEKEEVEEEEEEDKKRKLVKKTPAKKAPAKKAAAKKKSKDED 69 Query: 185 E 183 E Sbjct: 70 E 70
>ALG10_GIBZE (Q4HZE0) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 722 Score = 30.4 bits (67), Expect = 1.7 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +2 Query: 59 YNEFVHA*TKCGPFTTRSNLHHSFFVNFRYELTRAA 166 YN +H PFT N H+ F+V FRY + RAA Sbjct: 477 YNTIIH------PFTLADNRHYMFYV-FRYTIRRAA 505
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 30.4 bits (67), Expect = 1.7 Identities = 24/59 (40%), Positives = 28/59 (47%) Frame = +2 Query: 188 PPAAGSPGLLHDHLVQQVS*AQNQDQSPCLVGGTMGLNSIQSPYRLPKHQARP*VPPRR 364 PPA SP L S A+N SP + L+ +SP P HQARP VPP R Sbjct: 1227 PPAPRSP-----RLPASTSAARNASASP----RSQSLSRRESPS--PSHQARPGVPPPR 1274
>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein| sorting-associated protein VPS32) Length = 215 Score = 30.0 bits (66), Expect = 2.2 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDALEAD-MDFESNSVPSYLQPDKETDLDSELNLPA 234 E+ E + R Y + D+EEL EL+ALE + ++ E + Q + + +LPA Sbjct: 135 EVSEAISRPY--ANAYDDEELEDELEALEQETLEGELTNAGHVKQDGVQV---TPHDLPA 189 Query: 233 APSGHAAVPANRQQEDE 183 AP+ VPA + ++E Sbjct: 190 APN---QVPAEEEDDEE 203
>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 227 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = -3 Query: 413 NEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPA 234 +EI + + ++ DE+ELM EL+ LE + + + N + E + LP Sbjct: 145 DEISTAISKPVGFGEEFDEDELMAELEELEQE-ELDKNLL--------EISGPETVPLPN 195 Query: 233 APS-GHAAVPANRQQEDE 183 PS + PA +++E+E Sbjct: 196 VPSISIPSKPAKKKEEEE 213
>DBP9_SCHPO (O60080) ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)| Length = 595 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 383 YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSE 249 Y + DE +MGE++ LE ++DF V S QP + D E Sbjct: 311 YQIIIATDESGMMGEIEELENNVDFVEEEVISTDQPTLDKMKDQE 355
>GVPD2_HALSA (Q9HHT2) Protein gvpD 2| Length = 492 Score = 29.6 bits (65), Expect = 2.9 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Frame = +2 Query: 188 PPAAGSPGLLHDHLVQQVS*AQNQDQS---PCLVGGTMGLNSIQSPYRLPKHQARP 346 PP GSPGLLH+ L +S A G T + P RLP H P Sbjct: 318 PPKEGSPGLLHNDLSAVLSKAVFDTHCHVFETYAGPTRDHDDAVDPDRLPGHDTTP 373
>TOM1_YEAST (Q03280) E3 ubiquitin protein ligase TOM1 (EC 6.3.2.-)| (Temperature-dependent organization in mitotic nucleus protein 1) (Suppressor of snRNA protein 2) Length = 3268 Score = 29.3 bits (64), Expect = 3.7 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%) Frame = -3 Query: 362 DEEELMGELDALEADMDFESNSVPSYLQPDKE--TDLDSELN 243 DE++ MGE DA +A D E N + S +Q TD+D E++ Sbjct: 1944 DEDDDMGEEDADDARSDSEENELSSEMQSSTADGTDVDYEVD 1985
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 28.9 bits (63), Expect = 4.9 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = -3 Query: 293 PSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEMGLPTVPHASIR 147 PS + + DL S L+ AAP VPAN GL +PHA ++ Sbjct: 3412 PSPVSVSMKPDLPSPLSSQAAPKQPLFVPANSGPSTPPGL-ALPHAEVQ 3459
>RENT1_NEUCR (Q9HEH1) Regulator of nonsense transcripts 1 homolog| Length = 1093 Score = 28.9 bits (63), Expect = 4.9 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -3 Query: 314 DFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEMGLP 171 D+E+ S+ SY+ D + S L A SG+ A+ +N E GLP Sbjct: 935 DYETGSMVSYIPDDVSSIHSSALGGAALSSGYPAMFSNFHPEAWAGLP 982
>FOXA_YEREN (Q01674) Ferrioxamine receptor precursor| Length = 710 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = -3 Query: 293 PSYL-QPDKETDLDSELNLPAAPSG--HAAVPAN 201 PS L QPD+ T L NL PSG H+AVPA+ Sbjct: 235 PSLLWQPDENTSLLLRANLQKDPSGGYHSAVPAD 268
>TRPA_BRUSU (Q8FXY6) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 279 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -3 Query: 314 DFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEMGLPTVPHAS 153 D +++ V + D +++D+EL +PA +G + D+ LP V H S Sbjct: 118 DAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLTTPTTDDKRLPKVLHNS 171
>TRPA_BRUME (Q8YE59) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 279 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -3 Query: 314 DFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEMGLPTVPHAS 153 D +++ V + D +++D+EL +PA +G + D+ LP V H S Sbjct: 118 DAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLTTPTTDDKRLPKVLHNS 171
>TRPA_BRUAB (Q57AF2) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 279 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -3 Query: 314 DFESNSVPSYLQPDKETDLDSELNLPAAPSGHAAVPANRQQEDEMGLPTVPHAS 153 D +++ V + D +++D+EL +PA +G + D+ LP V H S Sbjct: 118 DAKASGVDGLIVVDLPSEMDAELCIPAMKAGINFIRLTTPTTDDKRLPKVLHNS 171
>CSMD1_MOUSE (Q923L3) CUB and sushi domain-containing protein 1 precursor (CUB and| sushi multiple domains protein 1) Length = 3564 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 243 LTCCTKWSCSSPGEPAAGG*NGTAY 169 LT C +C PG PA G NGT + Sbjct: 2730 LTVCVPITCGHPGNPAHGLTNGTEF 2754
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 28.1 bits (61), Expect = 8.3 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = -3 Query: 365 IDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDS-ELNLPAAPSGHAAVPANRQQE 189 +DEE EL LEA+M E SV D E E +L A + A A R+ Sbjct: 139 VDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEADLAALEAEGAKADARRKFR 198 Query: 188 D 186 D Sbjct: 199 D 199
>SECB_BARHE (Q6G540) Protein-export protein secB| Length = 158 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -3 Query: 362 DEEELMGELDALEADMDFESNSVPSYLQP-DKETDLDSELNLPAAPSG 222 D E + L D+ FE+ S P L+P +K +D +N+ A P G Sbjct: 10 DGEPVFAVLTQYLKDLSFENPSAPRSLRPREKAPQIDININVNANPIG 57
>ANF_RABIT (P07500) Atrial natriuretic factor precursor (ANF) (Atrial| natriuretic peptide) (ANP) (Prepronatriodilatin) Length = 153 Score = 28.1 bits (61), Expect = 8.3 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Frame = -3 Query: 383 YNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELN-LPAAPSGHAAV- 210 YN + D + LD LE M FE +VP ++ + + L+ LP P V Sbjct: 29 YNAMSNADLMDFKNLLDHLEDRMPFEDEAVPPQALSEQSDEAGAALSPLPEVPPWTGEVS 88 Query: 209 PANRQQE 189 PA R E Sbjct: 89 PAQRDGE 95
>NOV_XENLA (P51609) Protein NOV homolog precursor (Xnov)| Length = 343 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/23 (52%), Positives = 12/23 (52%) Frame = -2 Query: 237 CCTKWSCSSPGEPAAGG*NGTAY 169 CC KW C S E A GG AY Sbjct: 152 CCEKWVCDSKEEMAIGGFAMAAY 174
>EME1_SCHPO (Q9C103) Crossover junction endonuclease eme1 (EC 3.1.22.-)| (Essential meiotic endonuclease 1) Length = 738 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = -3 Query: 257 DSELNLPAAPSGHAAVPANRQQEDE-MGLPTVPHASIRT 144 D L+ P +PS H+++ N QED LP++ SI++ Sbjct: 296 DVHLDSPTSPSKHSSIEPNTSQEDSFQELPSLNKLSIQS 334
>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 224 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAA 231 EI + + ++ DE+ELM EL+ LE + + + N + E + LP Sbjct: 144 EISTAISKPVGFGEEFDEDELMAELEELEQE-ELDKNLL--------EISGPETVPLPNV 194 Query: 230 PS-GHAAVPANRQQEDE 183 PS + PA +++E++ Sbjct: 195 PSVALPSKPAKKKEEED 211
>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog associated with Alix 1) (hVps32) Length = 224 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -3 Query: 410 EIQETLGRSYNVPDDIDEEELMGELDALEADMDFESNSVPSYLQPDKETDLDSELNLPAA 231 EI + + ++ DE+ELM EL+ LE + + + N + E + LP Sbjct: 144 EISTAISKPVGFGEEFDEDELMAELEELEQE-ELDKNLL--------EISGPETVPLPNV 194 Query: 230 PS-GHAAVPANRQQEDE 183 PS + PA +++E++ Sbjct: 195 PSIALPSKPAKKKEEED 211 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,094,194 Number of Sequences: 219361 Number of extensions: 1235666 Number of successful extensions: 3529 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3521 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
