>HHIP_HUMAN (Q96QV1) Hedgehog-interacting protein precursor (HHIP) (HIP)|
          Length = 700

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
 Frame = +2

Query: 185 FGQKSEADGGSGSR----KPPVPME-----LHSQRNI*LG*NPISQVFYPRL---LGSRV 328
           FG+++E  G    R     PP  ++     + SQ  +  G   +   FYPRL   L S  
Sbjct: 25  FGERNEGSGARRRRCLNGNPPKRLKRRDRRMMSQLELLSGGEMLCGGFYPRLSCCLRSDS 84

Query: 329 DGIMLLPESNLSVTTITPQHALTDQSRPTRCXPHGXRIHHDKPSSKVVHANM 484
            G+  L     SVT  T    L ++ +   C PH   + H  P  +V+  ++
Sbjct: 85  PGLGRLENKIFSVTNNTECGKLLEEIKCALCSPHSQSLFH-SPEREVLERDL 135

>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +2

Query: 89  PQDYC*LVDTHLIHEILRKMQNLG------YNTMKVH*FGQKSEADGGSGSRKPPVPMEL 250
           PQD     + H +H+ +  M   G      YN MK    G    + G +G   PP PM+ 
Sbjct: 65  PQD-----NMHQMHKPMESMHEKGMSDDPRYNQMK----GMGMRSGGHAGMGPPPSPMDQ 115

Query: 251 HSQ 259
           HSQ
Sbjct: 116 HSQ 118

>SNX41_EMENI (Q5AZC9) Sorting nexin-41|
          Length = 615

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 350 ESNLSVTTITPQHALTDQSRPTRCXPHGXRIHHDKPSSKVVHANMAYDASGSTHSP 517
           + +LS ++ T     TD+SRP+        I  D P +   H +  Y  SG T  P
Sbjct: 445 QRSLSTSSATSSQGGTDESRPS--GEETASIDSDFPPTHAEHVSQRYPESGQTSPP 498

>HIS4_XANC5 (Q3BUF3) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 244

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 579 FLQDFGVHTTLLKLQRLCDANGEWVLPDASYAMLAWTTLEE 457
           +LQ+FG     + L    DANG W LP   +   A  TL++
Sbjct: 118 WLQEFGADRLTIALDTRQDANGIWQLPVHGWTETADATLDQ 158

>YKC2_CAEEL (P41993) Hypothetical protein B0280.2|
          Length = 627

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 289 DRILSKSDVPLGMEFHGHWRFPRTASAISLGLLSKSVDLHGIV 161
           D+ILS     L    +GHWR P   +A++L L + +   + I+
Sbjct: 26  DKILSSGICQLLFSENGHWRIPNGGTAVALFLKNSTERYYRII 68

>SYR_PROMP (Q7V396) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 603

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 201 RLMAEAVRGNLQCPWNSIPRGTSDLDKIRSHKSSILDF*VPGL 329
           +++ EA++ N++CP   +P   S  + I S K  I+DF  P +
Sbjct: 103 KVLIEAIKSNIKCPRAGVP--LSHKNNIYSKKKVIVDFSSPNI 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,931,859
Number of Sequences: 219361
Number of extensions: 2297225
Number of successful extensions: 5894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5877
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)