ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags31a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464189.1| Oryza sativa (japonica cultivar-group), mRNA Length = 6174 Score = 113 bits (57), Expect = 7e-22 Identities = 114/133 (85%) Strand = Plus / Minus Query: 511 cgaactgcttgggagaaccgacgcctttctggaagcaggggttgaagtgaacaaatcgag 570 ||||||||||||||| || ||||| |||||||||||||| || |||| |||| ||| || Sbjct: 6027 cgaactgcttgggagtacagacgcttttctggaagcaggcgtcgaagcaaacagatcaag 5968 Query: 571 tagctggtcagtgttcatggtcttcaggctagcattctcagaatttatgacggcgttggc 630 || |||||||||||||| ||||||||||| || ||||||| ||| ||||| || ||||| Sbjct: 5967 cagttggtcagtgttcattgtcttcaggctggcgttctcagcattgatgaccgcattggc 5908 Query: 631 aaccgacaccttg 643 |||||||||||| Sbjct: 5907 caccgacaccttg 5895 Score = 79.8 bits (40), Expect = 1e-11 Identities = 100/120 (83%) Strand = Plus / Minus Query: 368 ccgttgagctttgccaggaactggttcatatcatactcgtccgcatactgcgactggtcc 427 ||||||||||| |||| ||||||||| | ||| |||||||| |||||||| ||||| ||| Sbjct: 6170 ccgttgagcttcgccaagaactggttgagatcgtactcgtctgcatactgagactgatcc 6111 Query: 428 cacagctcgtccagcccgctcaggattgacttgaggcccttgcgacctgatttccccttg 487 || ||||||||||| || |||| || ||||| | ||||| | ||| |||||||||||| Sbjct: 6110 catagctcgtccagaccattcagaatggacttcaaacccttcccaccagatttccccttg 6051
>gb|BT017288.1| Zea mays clone EL01N0314H06.c mRNA sequence Length = 1342 Score = 95.6 bits (48), Expect = 2e-16 Identities = 93/108 (86%) Strand = Plus / Minus Query: 536 tttctggaagcaggggttgaagtgaacaaatcgagtagctggtcagtgttcatggtcttc 595 ||||| |||||||||||||| ||||||| ||| || |||||||||||||||||||||||| Sbjct: 956 tttcttgaagcaggggttgatgtgaacagatcaagcagctggtcagtgttcatggtcttc 897 Query: 596 aggctagcattctcagaatttatgacggcgttggcaaccgacaccttg 643 | ||| | ||||||| ||| ||||| || ||||| || ||||||||| Sbjct: 896 aagctcgagttctcagcattgatgacagcattggcgactgacaccttg 849 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 368 ccgttgagctttgccaggaactggttcatatcatactcgtccgcatactgcgactggtcc 427 ||||| ||||| |||||||||||||||| ||||||||| || |||||||||||||| ||| Sbjct: 1094 ccgttcagcttcgccaggaactggttcagatcatactcatcggcatactgcgactgatcc 1035 Query: 428 cacagctcgtccag 441 || ||||| ||||| Sbjct: 1034 caaagctcatccag 1021
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 536 tttctggaagcaggggttgaagtgaacaaatcgagtagctggtcagtgttcatggtcttc 595 |||||||||||||| || |||| |||| ||| || || |||||||||||||| |||||| Sbjct: 3317771 tttctggaagcaggcgtcgaagcaaacagatcaagcagttggtcagtgttcattgtcttc 3317712 Query: 596 aggctagcattctcagaatttatgacggcgttggcaaccgacaccttg 643 ||||| || ||||||| ||| ||||| || ||||| |||||||||||| Sbjct: 3317711 aggctggcgttctcagcattgatgaccgcattggccaccgacaccttg 3317664 Score = 83.8 bits (42), Expect = 7e-13 Identities = 105/126 (83%) Strand = Plus / Minus Query: 362 gttcacccgttgagctttgccaggaactggttcatatcatactcgtccgcatactgcgac 421 ||||| ||||||||||| |||| ||||||||| | ||| |||||||| |||||||| ||| Sbjct: 3318042 gttcagccgttgagcttcgccaagaactggttgagatcgtactcgtctgcatactgagac 3317983 Query: 422 tggtcccacagctcgtccagcccgctcaggattgacttgaggcccttgcgacctgatttc 481 || ||||| ||||||||||| || |||| || ||||| | ||||| | ||| |||||| Sbjct: 3317982 tgatcccatagctcgtccagaccattcagaatggacttcaaacccttcccaccagatttc 3317923 Query: 482 cccttg 487 |||||| Sbjct: 3317922 cccttg 3317917 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 cacgagcgagcaagcgagcgagcg 343 ||||||||||| |||||||||||| Sbjct: 25204400 cacgagcgagcgagcgagcgagcg 25204377
>dbj|AP004126.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_G05 Length = 141860 Score = 87.7 bits (44), Expect = 4e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 536 tttctggaagcaggggttgaagtgaacaaatcgagtagctggtcagtgttcatggtcttc 595 |||||||||||||| || |||| |||| ||| || || |||||||||||||| |||||| Sbjct: 66631 tttctggaagcaggcgtcgaagcaaacagatcaagcagttggtcagtgttcattgtcttc 66572 Query: 596 aggctagcattctcagaatttatgacggcgttggcaaccgacaccttg 643 ||||| || ||||||| ||| ||||| || ||||| |||||||||||| Sbjct: 66571 aggctggcgttctcagcattgatgaccgcattggccaccgacaccttg 66524 Score = 83.8 bits (42), Expect = 7e-13 Identities = 105/126 (83%) Strand = Plus / Minus Query: 362 gttcacccgttgagctttgccaggaactggttcatatcatactcgtccgcatactgcgac 421 ||||| ||||||||||| |||| ||||||||| | ||| |||||||| |||||||| ||| Sbjct: 66902 gttcagccgttgagcttcgccaagaactggttgagatcgtactcgtctgcatactgagac 66843 Query: 422 tggtcccacagctcgtccagcccgctcaggattgacttgaggcccttgcgacctgatttc 481 || ||||| ||||||||||| || |||| || ||||| | ||||| | ||| |||||| Sbjct: 66842 tgatcccatagctcgtccagaccattcagaatggacttcaaacccttcccaccagatttc 66783 Query: 482 cccttg 487 |||||| Sbjct: 66782 cccttg 66777
>ref|NM_115288.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding AT3G54280 mRNA, complete cds Length = 6498 Score = 44.1 bits (22), Expect = 0.56 Identities = 52/62 (83%) Strand = Plus / Minus Query: 578 tcagtgttcatggtcttcaggctagcattctcagaatttatgacggcgttggcaaccgac 637 ||||||||||| ||||||| || |||||||||| ||| || || | |||||||||||| Sbjct: 5945 tcagtgttcattgtcttcatactcgcattctcagcattgattaccgtattggcaaccgac 5886 Query: 638 ac 639 || Sbjct: 5885 ac 5884
>gb|AC124437.4| Mus musculus BAC clone RP24-257N6 from chromosome 3, complete sequence Length = 149145 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagcg 343 |||||||||||||||||||||| Sbjct: 117357 cgagcgagcaagcgagcgagcg 117378
>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence Length = 422021 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcgg 344 |||||||||||||||||||||| Sbjct: 34752 gagcgagcaagcgagcgagcgg 34773
>ref|XM_499627.1| Yarrowia lipolytica CLIB122, YALI0A00759g predicted mRNA Length = 2958 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 430 cagctcgtccagcccgctcagg 451 |||||||||||||||||||||| Sbjct: 1671 cagctcgtccagcccgctcagg 1650
>emb|BX294024.1|NC20H10 Neurospora crassa DNA linkage group V Cosmid contig 20H10 Length = 96283 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 321 acgagcgagcaagcgagcgagc 342 |||||||||||||||||||||| Sbjct: 95845 acgagcgagcaagcgagcgagc 95824
>emb|AL132957.1|ATF24B22 Arabidopsis thaliana DNA chromosome 3, BAC clone F24B22 Length = 100285 Score = 44.1 bits (22), Expect = 0.56 Identities = 52/62 (83%) Strand = Plus / Minus Query: 578 tcagtgttcatggtcttcaggctagcattctcagaatttatgacggcgttggcaaccgac 637 ||||||||||| ||||||| || |||||||||| ||| || || | |||||||||||| Sbjct: 88622 tcagtgttcattgtcttcatactcgcattctcagcattgattaccgtattggcaaccgac 88563 Query: 638 ac 639 || Sbjct: 88562 ac 88561
>emb|CR388176.8| Zebrafish DNA sequence from clone DKEY-109D19 in linkage group 21, complete sequence Length = 159175 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcgg 344 |||||||||||||||||||||| Sbjct: 89085 gagcgagcaagcgagcgagcgg 89106
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagcggcca 347 ||||||||| |||||||||||||||| Sbjct: 3973097 cgagcgagcgagcgagcgagcggcca 3973122
>gb|AC115907.7| Mus musculus chromosome 3, clone RP24-476B18, complete sequence Length = 165131 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcg 343 |||||||||||||||||||||| Sbjct: 137743 cgagcgagcaagcgagcgagcg 137722
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagcggcca 347 ||||||||| |||||||||||||||| Sbjct: 3975391 cgagcgagcgagcgagcgagcggcca 3975416
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 430 cagctcgtccagcccgctcagg 451 |||||||||||||||||||||| Sbjct: 93214 cagctcgtccagcccgctcagg 93193
>emb|AL807384.5| Mouse DNA sequence from clone RP23-18F9 on chromosome 2, complete sequence Length = 218815 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 319 acacgagcgagcaagcgagcgagcgg 344 |||||||||||| ||||||||||||| Sbjct: 175220 acacgagcgagcgagcgagcgagcgg 175245
>emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chromosome X, complete sequence Length = 220201 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcg 343 |||||||||||||||||||||| Sbjct: 4191 cgagcgagcaagcgagcgagcg 4170
>ref|NM_006769.2| Homo sapiens LIM domain only 4 (LMO4), mRNA Length = 2126 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 279 gagcgagcaagcgagcgagcg 299
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence Length = 154765 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 133517 gagcgagcaagcgagcgagcg 133537
>gb|AC098157.8| Rattus norvegicus X BAC CH230-75N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 233894 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 5116 gagcgagcaagcgagcgagcg 5136
>gb|AC158549.8| Mus musculus chromosome 19, clone RP24-216K4, complete sequence Length = 195500 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagc 342 ||||||||||||||||||||| Sbjct: 134265 cgagcgagcaagcgagcgagc 134285
>gb|AY456145.1| Neorhynchocephalus volaticus clone Nem28Sc-h 28S ribosomal RNA gene, partial sequence Length = 1456 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 caggctcttctagcccatcca 99 ||||||||||||||||||||| Sbjct: 849 caggctcttctagcccatcca 829
>gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome 13, complete sequence Length = 192969 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagc 342 ||||||||||||||||||||| Sbjct: 123039 cgagcgagcaagcgagcgagc 123059 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 123028 gagcgagcaagcgagcgagc 123047
>gb|AC121722.4| Rattus norvegicus X BAC CH230-342C11 (Children's Hospital Oakland Research Institute) complete sequence Length = 179370 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 86526 gagcgagcaagcgagcgagcg 86546
>gb|AC154796.2| Mus musculus BAC clone RP24-490B17 from chromosome 17, complete sequence Length = 161075 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 319 acacgagcgagcaagcgagcgagcg 343 |||||||||||| |||||||||||| Sbjct: 95334 acacgagcgagcgagcgagcgagcg 95358
>gb|DQ093579.1| Mus musculus pannexin 2 (Panx2) mRNA, complete cds Length = 3031 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 321 acgagcgagcaagcgagcgagcggc 345 |||||||||| |||||||||||||| Sbjct: 2779 acgagcgagcgagcgagcgagcggc 2803
>gb|AC091559.7| Homo sapiens chromosome 8, clone RP11-60C8, complete sequence Length = 166357 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 35216 gagcgagcaagcgagcgagcg 35236
>gb|DP000058.1| Felis catus target 117 genomic scaffold Length = 458092 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagc 342 ||||||||||||||||||||| Sbjct: 229534 cgagcgagcaagcgagcgagc 229554
>gb|AC092392.2| Homo sapiens chromosome 1 clone RP4-544H6, complete sequence Length = 98286 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 42099 gagcgagcaagcgagcgagcg 42119
>gb|AC113069.10| Mus musculus chromosome 15, clone RP23-269F24, complete sequence Length = 192825 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 321 acgagcgagcaagcgagcgagcggc 345 |||||||||| |||||||||||||| Sbjct: 91658 acgagcgagcgagcgagcgagcggc 91682
>gb|AF265255.1|AF265255 Polytrichum formosum clone F-12 microsatellite sequence Length = 190 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 154 gagcgagcaagcgagcgagcg 174
>emb|BX119987.6| Zebrafish DNA sequence from clone DKEY-242G16 in linkage group 19, complete sequence Length = 153687 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagc 342 ||||||||||||||||||||| Sbjct: 23034 cgagcgagcaagcgagcgagc 23014
>gb|U24576.1|U24576 Homo sapiens breast tumor autoantigen (LMO4) mRNA, complete cds Length = 2080 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 279 gagcgagcaagcgagcgagcg 299
>emb|AL845305.5| Mouse DNA sequence from clone RP23-202K13 on chromosome 2, complete sequence Length = 200141 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gagcgagcaagcgagcgagcg 343 ||||||||||||||||||||| Sbjct: 145766 gagcgagcaagcgagcgagcg 145746
>emb|AJ416379.1|MMU416379 Mus musculus ESM-1 gene Length = 9630 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagc 342 ||||||||||||||||||||| Sbjct: 1790 cgagcgagcaagcgagcgagc 1810
>gb|U55816.1|RNU55816 Rattus norvegicus furosemide-sensitive K-Cl cotransporter (KCC2) mRNA, complete cds Length = 5566 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgagcaagcgagcgagcggc 345 |||||||||||||||||||| Sbjct: 30 cgagcaagcgagcgagcggc 49
>gb|AC154049.1| Drosophila melanogaster clone BACR23M02, complete sequence Length = 126566 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagcggcc 346 ||||||||||||||||||| |||| Sbjct: 73208 gagcgagcaagcgagcgagtggcc 73231
>gb|AC111134.10| Mus musculus chromosome 3, clone RP23-349J3, complete sequence Length = 223171 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 agcgagcaagcgagcgagcg 343 |||||||||||||||||||| Sbjct: 166766 agcgagcaagcgagcgagcg 166747
>gb|AC109498.10| Mus musculus chromosome 5, clone RP23-22K24, complete sequence Length = 218246 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 agcgagcaagcgagcgagcg 343 |||||||||||||||||||| Sbjct: 190663 agcgagcaagcgagcgagcg 190644
>gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, complete sequence Length = 195609 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ggaaaaagaattgagatctc 140 |||||||||||||||||||| Sbjct: 89385 ggaaaaagaattgagatctc 89404
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 74304 cgagcgagcgagcgagcgagcggc 74281
>gb|AC116595.4| Mus musculus BAC clone RP24-127G9 from chromosome 18, complete sequence Length = 158788 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgag 341 |||||||||||||||||||| Sbjct: 46177 cgagcgagcaagcgagcgag 46158
>gb|BC017614.1| Mus musculus RIKEN cDNA 2410081M15 gene, mRNA (cDNA clone MGC:27680 IMAGE:4912757), complete cds Length = 2131 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 85 cgagcgagcgagcgagcgagcggc 108
>ref|XM_658841.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6329.2), mRNA Length = 9672 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ggattgacttgaggcccttg 469 |||||||||||||||||||| Sbjct: 3914 ggattgacttgaggcccttg 3895
>gb|AY542802.1| Cystoseira osmundacea biotype Elk Head 4 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 1243 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 acgagcgagcaagcgagcgagcgg 344 |||||||||| ||||||||||||| Sbjct: 192 acgagcgagcgagcgagcgagcgg 215
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 29242437 cgagcgagcgagcgagcgagcggc 29242414
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 113563 cgagcgagcgagcgagcgagcggc 113586
>ref|XM_647532.1| Entamoeba histolytica HM-1:IMSS chaperone protein dnaK, putative (111.t00021) partial mRNA Length = 1572 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 aaaactaaaacaagaaagat 241 |||||||||||||||||||| Sbjct: 772 aaaactaaaacaagaaagat 791
>emb|CR759789.8| Zebrafish DNA sequence from clone CH211-153M1, complete sequence Length = 165831 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 aatgaaaactaaaacaagaaagat 241 ||||||||||||||||| |||||| Sbjct: 35195 aatgaaaactaaaacaaaaaagat 35218
>ref|NM_006464.2| Homo sapiens trans-golgi network protein 2 (TGOLN2), mRNA Length = 6345 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gaaaggagctcactcttgga 35 |||||||||||||||||||| Sbjct: 4021 gaaaggagctcactcttgga 4040
>emb|AL160270.19| Human DNA sequence from clone RP11-296L22 on chromosome 9 Contains the 5' end of the C9orf25 gene for chromosome 9 open reading frame 25 (FLJ39031), the DNAI1 gene for dynein axonemal intermediate polypeptide 1, the CNTFR gene for ciliary neurotrophic factor receptor, a novel pseudogene, three novel genes, the 3' end of the DCTN3 gene for dynactin (p22) and five CpG islands, complete sequence Length = 199114 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 173365 gagcgagcaagcgagcgagc 173384
>emb|AL139125.18| Human DNA sequence from clone RP5-1031D4 on chromosome 10 Contains the 5' end of the gene for a novel protein (KIAA1617), a novel gene and a CpG island, complete sequence Length = 124437 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgag 341 |||||||||||||||||||| Sbjct: 43563 cgagcgagcaagcgagcgag 43544
>gb|AC090571.5| Homo sapiens chromosome 8, clone RP11-313J18, complete sequence Length = 218627 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 agcgagcaagcgagcgagcg 343 |||||||||||||||||||| Sbjct: 16005 agcgagcaagcgagcgagcg 15986
>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence Length = 238599 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 80092 cgagcgagcgagcgagcgagcggc 80069
>emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 on chromosome 6p24.1-25.3 Contains a novel gene, complete sequence Length = 131819 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gaaaactaaaacaagaaaga 240 |||||||||||||||||||| Sbjct: 108637 gaaaactaaaacaagaaaga 108656
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 532 cgcctttctggaagcaggggttga 555 |||||||||||| ||||||||||| Sbjct: 845027 cgcctttctggatgcaggggttga 845050
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgag 341 |||||||||||||||||||| Sbjct: 12635 cgagcgagcaagcgagcgag 12654
>emb|BX640818.1|HSM806929 Homo sapiens genomic DNA; cDNA DKFZp686N06174 (from clone DKFZp686N06174) Length = 2960 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gaaaggagctcactcttgga 35 |||||||||||||||||||| Sbjct: 615 gaaaggagctcactcttgga 634
>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181174 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 108333 gagcgagcaagcgagcgagc 108352
>gb|AC096534.2| Homo sapiens chromosome 1 clone RP11-32I17, complete sequence Length = 195270 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 175888 gagcgagcaagcgagcgagc 175907
>dbj|AK126465.1| Homo sapiens cDNA FLJ44501 fis, clone UTERU3000899, moderately similar to Homo sapiens trans-golgi network glycoprotein 51 (TGN) Length = 5573 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gaaaggagctcactcttgga 35 |||||||||||||||||||| Sbjct: 3288 gaaaggagctcactcttgga 3307
>gb|M34879.1|HUMAMYB18 Homo sapiens amyloid-beta protein (APP) gene, exon 17 Length = 567 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 505 gaatgaaaaccaaaacaagaaaga 482
>gb|AC103724.2| Homo sapiens chromosome 8, clone RP11-589C21, complete sequence Length = 162566 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 agcgagcaagcgagcgagcg 343 |||||||||||||||||||| Sbjct: 127039 agcgagcaagcgagcgagcg 127020
>gb|AC005833.1| Homo sapiens 12p13.3 BAC RPCI11-234B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 122903 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 aggaatgaaaactaaaacaagaaa 238 ||||| |||||||||||||||||| Sbjct: 17145 aggaaagaaaactaaaacaagaaa 17122
>ref|NM_134363.1| Rattus norvegicus solute carrier family 12, (potassium-chloride transporter) member 5 (Slc12a5), mRNA Length = 5566 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgagcaagcgagcgagcggc 345 |||||||||||||||||||| Sbjct: 30 cgagcaagcgagcgagcggc 49
>gb|DP000042.1| Lemur catta target 106 genomic scaffold Length = 452647 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 atgaaaactaaaacaagaaa 238 |||||||||||||||||||| Sbjct: 180727 atgaaaactaaaacaagaaa 180746
>gb|AC106505.4| Rattus norvegicus 1 BAC CH230-206C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 199167 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cgagcgagcaagcgagcgag 341 |||||||||||||||||||| Sbjct: 8009 cgagcgagcaagcgagcgag 8028
>gb|AC159966.5| Mus musculus chromosome 1, clone RP23-287P12, complete sequence Length = 208142 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 cgagcaagcgagcgagcggc 345 |||||||||||||||||||| Sbjct: 117985 cgagcaagcgagcgagcggc 118004
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gaaaactaaaacaagaaaga 240 |||||||||||||||||||| Sbjct: 28786309 gaaaactaaaacaagaaaga 28786328
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 29333865 cgagcgagcgagcgagcgagcggc 29333842
>gb|AC110766.5| Homo sapiens BAC clone RP11-93M12 from 4, complete sequence Length = 169442 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 agcattctcagaatttatga 620 |||||||||||||||||||| Sbjct: 84835 agcattctcagaatttatga 84816
>gb|AC093162.5| Homo sapiens BAC clone RP11-746I5 from 2, complete sequence Length = 89201 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gaaaggagctcactcttgga 35 |||||||||||||||||||| Sbjct: 59865 gaaaggagctcactcttgga 59846
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gaaaactaaaacaagaaaga 240 |||||||||||||||||||| Sbjct: 93870 gaaaactaaaacaagaaaga 93889
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gaaaactaaaacaagaaaga 240 |||||||||||||||||||| Sbjct: 43995 gaaaactaaaacaagaaaga 44014
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 cacgagcgagcaagcgagcgagcg 343 ||||||||||| |||||||||||| Sbjct: 104793 cacgagcgagcgagcgagcgagcg 104770
>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete sequences Length = 203521 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 104328 gaatgaaaaccaaaacaagaaaga 104351
>dbj|AK025805.1| Homo sapiens cDNA: FLJ22152 fis, clone HRC00114 Length = 2104 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 gaaaggagctcactcttgga 35 |||||||||||||||||||| Sbjct: 961 gaaaggagctcactcttgga 980
>emb|AJ328761.1|HSA328761 Homo sapiens genomic sequence surrounding NotI site, clone NR1-ND18C Length = 721 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 83 gagcgagcaagcgagcgagc 64
>emb|AJ328760.1|HSA328760 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NK13C Length = 783 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 83 gagcgagcaagcgagcgagc 64
>emb|AJ328759.1|HSA328759 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NO16C Length = 766 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 83 gagcgagcaagcgagcgagc 64
>dbj|AK067068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C21, full insert sequence Length = 1511 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 112 cgagcgagcgagcgagcgagcggc 89
>gb|AC084291.27| Homo sapiens 12 BAC RP11-465L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125429 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||||||||||||| |||| Sbjct: 35843 cgagcgagcaagcgagcgatcggc 35820
>gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 of 74 of the complete sequence Length = 334222 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 gagcgagcaagcgagcgagcggcc 346 ||||||||||||||||||| |||| Sbjct: 210107 gagcgagcaagcgagcgagtggcc 210084
>gb|AY919674.1| Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) (APP) gene, complete cds Length = 293960 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 281008 gaatgaaaaccaaaacaagaaaga 280985
>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 298602 gaatgaaaaccaaaacaagaaaga 298625
>emb|CR450786.7| Zebrafish DNA sequence from clone CH211-69J23 in linkage group 11, complete sequence Length = 169832 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gagcgagcaagcgagcgagc 342 |||||||||||||||||||| Sbjct: 72231 gagcgagcaagcgagcgagc 72250
>emb|AL807833.5| Mouse DNA sequence from clone RP23-371E13 on chromosome 4, complete sequence Length = 188795 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 cacgagcgagcaagcgagcgagcg 343 ||||||||||| |||||||||||| Sbjct: 183613 cacgagcgagcgagcgagcgagcg 183590
>emb|AL669950.11| Mouse DNA sequence from clone RP23-14C19 on chromosome X, complete sequence Length = 207256 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgag 341 |||||||||||||||||||| Sbjct: 185000 cgagcgagcaagcgagcgag 184981
>dbj|AP000140.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone B2291C14-R44F3, segment 5/10, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 97898 gaatgaaaaccaaaacaagaaaga 97921
>dbj|D87675.1| Homo sapiens DNA for amyloid precursor protein, complete cds Length = 301692 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 284714 gaatgaaaaccaaaacaagaaaga 284691
>dbj|AP001443.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:T364, LL56-APP region, complete sequence Length = 36994 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 16979 gaatgaaaaccaaaacaagaaaga 17002
>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533 region, segment 5/7 Length = 161014 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 gaatgaaaactaaaacaagaaaga 240 |||||||||| ||||||||||||| Sbjct: 97898 gaatgaaaaccaaaacaagaaaga 97921
>emb|AL607123.22| Mouse DNA sequence from clone RP23-391E6 on chromosome 4, complete sequence Length = 149369 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cgagcgagcaagcgagcgagcggc 345 ||||||||| |||||||||||||| Sbjct: 126760 cgagcgagcgagcgagcgagcggc 126737 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,135,867 Number of Sequences: 3902068 Number of extensions: 5135867 Number of successful extensions: 87531 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87100 Number of HSP's gapped (non-prelim): 424 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
