ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30k23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 3e-18
2gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
3gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 101 3e-18
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
5dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
6gb|AY108718.1| Zea mays PCO111663 mRNA sequence 70 1e-08
7ref|XM_479462.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-07
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
9dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
10dbj|AK067933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
11ref|XM_475133.1| Oryza sativa (japonica cultivar-group), predic... 44 0.60
12gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.60
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
14dbj|AK058953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
15emb|AL591423.6| Human DNA sequence from clone RP11-134P18 on chr... 42 2.4
16gb|AC011701.22|AC011701 Homo sapiens 12 BAC RP11-937I21 (Roswell... 42 2.4
17ref|XM_470243.1| Oryza sativa (japonica cultivar-group), predic... 40 9.3
18gb|AC134535.4| Mus musculus BAC clone RP24-371E20 from chromosom... 40 9.3
19gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-... 40 9.3
20gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 9.3
21emb|AL121959.15|HSDJ78N10 Human DNA sequence from clone RP1-78N1... 40 9.3
22gb|BC030588.2| Homo sapiens eyes absent homolog 4 (Drosophila), ... 40 9.3
23gb|AC011448.5| Homo sapiens chromosome 19 clone CTC-260F20, comp... 40 9.3
24gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
25gb|BC109639.1| Bos taurus transcription factor-like 1, mRNA (cDN... 40 9.3
26gb|AY268590.1| Homo sapiens BCL2/adenovirus E1B 19kDa interactin... 40 9.3
27gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
29ref|NM_001015658.1| Bos taurus transcription factor-like 1 (TCFL... 40 9.3
30gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map ... 40 9.3
31dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
32dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.3
33dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.3
34gb|BT020964.1| Bos taurus transcription factor-like 1 (TCFL1), m... 40 9.3
35emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, c... 40 9.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 315      cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 374
                |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 12880866 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12880925

                                               
Query: 375      catgtataggtatgatggcgaccattgctgc 405
                |||||| ||||| || |||||||| ||||||
Sbjct: 12880926 catgtacaggtacgacggcgaccactgctgc 12880956



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                            
Query: 494      gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 553
                |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 12881066 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12881125

                                 
Query: 554      tcaccggctgcggcgcg 570
                |||||||||||||||||
Sbjct: 12881126 tcaccggctgcggcgcg 12881142



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 228      tcacatgacgctgcacgagttggggttctcgtcgtcgaa 266
                ||||||||||||||| | |||||||||||||||||||||
Sbjct: 12880791 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 12880829



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 25       ggcgtatcccattacaattacatgctcta 53
                ||||| || ||||||||||||||||||||
Sbjct: 12880565 ggcgtgtctcattacaattacatgctcta 12880593



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 230     acatgacgctgcacgagttggggttctcgtcg 261
               ||||||||  ||| ||||||||||||||||||
Sbjct: 3028744 acatgacggcgcaggagttggggttctcgtcg 3028775
to top
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
              complete sequence
          Length = 132243

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                          
Query: 315    cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 374
              |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 119082 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 119141

                                             
Query: 375    catgtataggtatgatggcgaccattgctgc 405
              |||||| ||||| || |||||||| ||||||
Sbjct: 119142 catgtacaggtacgacggcgaccactgctgc 119172



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                          
Query: 494    gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 553
              |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 119282 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 119341

                               
Query: 554    tcaccggctgcggcgcg 570
              |||||||||||||||||
Sbjct: 119342 tcaccggctgcggcgcg 119358



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 228    tcacatgacgctgcacgagttggggttctcgtcgtcgaa 266
              ||||||||||||||| | |||||||||||||||||||||
Sbjct: 119007 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 119045



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 25     ggcgtatcccattacaattacatgctcta 53
              ||||| || ||||||||||||||||||||
Sbjct: 118781 ggcgtgtctcattacaattacatgctcta 118809
to top
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                         
Query: 315   cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 374
             |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 58643 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 58584

                                            
Query: 375   catgtataggtatgatggcgaccattgctgc 405
             |||||| ||||| || |||||||| ||||||
Sbjct: 58583 catgtacaggtacgacggcgaccactgctgc 58553



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 494   gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 553
             |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 58443 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 58384

                              
Query: 554   tcaccggctgcggcgcg 570
             |||||||||||||||||
Sbjct: 58383 tcaccggctgcggcgcg 58367



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 228   tcacatgacgctgcacgagttggggttctcgtcgtcgaa 266
             ||||||||||||||| | |||||||||||||||||||||
Sbjct: 58718 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 58680



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 25    ggcgtatcccattacaattacatgctcta 53
             ||||| || ||||||||||||||||||||
Sbjct: 58944 ggcgtgtctcattacaattacatgctcta 58916
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 315      cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 374
                |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 12877629 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12877688

                                               
Query: 375      catgtataggtatgatggcgaccattgctgc 405
                |||||| ||||| || |||||||| ||||||
Sbjct: 12877689 catgtacaggtacgacggcgaccactgctgc 12877719



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Plus

                                                                            
Query: 494      gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 553
                |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 12877829 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12877888

                                 
Query: 554      tcaccggctgcggcgcg 570
                |||||||||||||||||
Sbjct: 12877889 tcaccggctgcggcgcg 12877905



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 228      tcacatgacgctgcacgagttggggttctcgtcgtcgaa 266
                ||||||||||||||| | |||||||||||||||||||||
Sbjct: 12877554 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 12877592



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 25       ggcgtatcccattacaattacatgctcta 53
                ||||| || ||||||||||||||||||||
Sbjct: 12877328 ggcgtgtctcattacaattacatgctcta 12877356



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 230     acatgacgctgcacgagttggggttctcgtcg 261
               ||||||||  ||| ||||||||||||||||||
Sbjct: 3028855 acatgacggcgcaggagttggggttctcgtcg 3028886
to top
>dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051K22, full
           insert sequence
          Length = 1071

 Score =  101 bits (51), Expect = 3e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                       
Query: 315 cgtcccgggcgggctgtagtagtcttggtagtaggactccggcgacgcgtgcgggtacgg 374
           |||||| |||||||||||||||||  |||||||||  |||||||||| ||||||||||||
Sbjct: 684 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 625

                                          
Query: 375 catgtataggtatgatggcgaccattgctgc 405
           |||||| ||||| || |||||||| ||||||
Sbjct: 624 catgtacaggtacgacggcgaccactgctgc 594



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                       
Query: 494 gctccggctgcggcgcgtagtgggacacgctggctctcggctgcgccatgttgtagctca 553
           |||||||| |||||||||||| ||| ||||| |   ||||||||||||||| ||||||||
Sbjct: 484 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 425

                            
Query: 554 tcaccggctgcggcgcg 570
           |||||||||||||||||
Sbjct: 424 tcaccggctgcggcgcg 408



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 228 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 266
           ||||||||||||||| | |||||||||||||||||||||
Sbjct: 759 tcacatgacgctgcaggcgttggggttctcgtcgtcgaa 721



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 25  ggcgtatcccattacaattacatgctcta 53
           ||||| || ||||||||||||||||||||
Sbjct: 987 ggcgtgtctcattacaattacatgctcta 959
to top
>gb|AY108718.1| Zea mays PCO111663 mRNA sequence
          Length = 435

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 228 tcacatgacgctgcacgagttggggttctcgtcgtcgaa 266
           ||||||||||||||| |||||||||||||||||||||||
Sbjct: 251 tcacatgacgctgcaggagttggggttctcgtcgtcgaa 213



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 85/102 (83%), Gaps = 6/102 (5%)
 Strand = Plus / Minus

                                                                       
Query: 308 acgcgttcgtcccgggcgggctgtagtagtc---ttggtagtaggactccggcgac---g 361
           |||||| | |||||||||||| |||||||||    |||||||| | |||||||| |   |
Sbjct: 183 acgcgtgcatcccgggcgggccgtagtagtcctgctggtagtaaggctccggcgccgcgg 124

                                                     
Query: 362 cgtgcgggtacggcatgtataggtatgatggcgaccattgct 403
           ||||||||||||||||||| ||||| || |||||||| ||||
Sbjct: 123 cgtgcgggtacggcatgtacaggtacgacggcgaccactgct 82
to top
>ref|XM_479462.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1243

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 516 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 568
           ||||||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 781 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 729
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 516      ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 568
                ||||||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 28330083 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 28330031
to top
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0470D12
          Length = 157248

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 516   ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 568
             ||||||||| || ||||| |||||||  |||||||||||||||||||||||||
Sbjct: 55646 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggctgcggcg 55594
to top
>dbj|AK067933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A09, full
           insert sequence
          Length = 1243

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 516 ggacacgctggctctcggctgcgccatgttgtagctcatcaccggctgcggcg 568
           ||||||||| || ||||| |||||||  ||||||||||||||||||| |||||
Sbjct: 781 ggacacgctcgcgctcgggtgcgccacattgtagctcatcaccggcttcggcg 729
to top
>ref|XM_475133.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1023

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 228  tcacatgacgctgcacgagttggggttctcgtcg 261
            ||||||||||||||| ||||||| ||| ||||||
Sbjct: 1023 tcacatgacgctgcaagagttggcgttgtcgtcg 990
to top
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07,
              complete sequence
          Length = 159932

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 228    tcacatgacgctgcacgagttggggttctcgtcg 261
              ||||||||||||||| ||||||| ||| ||||||
Sbjct: 100076 tcacatgacgctgcaagagttggcgttgtcgtcg 100109
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 228      tcacatgacgctgcacgagttggggttctcgtcg 261
                ||||||||||||||| ||||||| ||| ||||||
Sbjct: 17570271 tcacatgacgctgcaagagttggcgttgtcgtcg 17570304
to top
>dbj|AK058953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A11, full
            insert sequence
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 228  tcacatgacgctgcacgagttggggttctcgtcg 261
            ||||||||||||||| ||||||| ||| ||||||
Sbjct: 1087 tcacatgacgctgcaagagttggcgttgtcgtcg 1054
to top
>emb|AL591423.6| Human DNA sequence from clone RP11-134P18 on chromosome 9 Contains a
             novel gene, the 5' end of a novel gene and a CpG island,
             complete sequence
          Length = 54193

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   ccagagaggtctctgttacga 201
             |||||||||||||||||||||
Sbjct: 17702 ccagagaggtctctgttacga 17682
to top
>gb|AC011701.22|AC011701 Homo sapiens 12 BAC RP11-937I21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 205510

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    ccagagaggtctctgttacga 201
              |||||||||||||||||||||
Sbjct: 128114 ccagagaggtctctgttacga 128134
to top
>ref|XM_470243.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 468

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 230 acatgacgctgcacgagttggggttctcgtcg 261
           ||||||||  ||| ||||||||||||||||||
Sbjct: 466 acatgacggcgcaggagttggggttctcgtcg 435
to top
>gb|AC134535.4| Mus musculus BAC clone RP24-371E20 from chromosome 7, complete sequence
          Length = 214571

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    tagacaagagagagctttga 140
              ||||||||||||||||||||
Sbjct: 101026 tagacaagagagagctttga 101007
to top
>gb|AC002551.1|HUAC002551 Human Chromosome 16 BAC clone CIT987SK-A-951C11, complete sequence
          Length = 114411

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 430   gcctgctgcgccggtgagtgctgc 453
             |||||||||||||||| |||||||
Sbjct: 71876 gcctgctgcgccggtgtgtgctgc 71899
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 551     tcatcaccggctgcggcgcg 570
               ||||||||||||||||||||
Sbjct: 3309933 tcatcaccggctgcggcgcg 3309914
to top
>emb|AL121959.15|HSDJ78N10 Human DNA sequence from clone RP1-78N10 on chromosome 6q22.33-23.3
             Contains the 5' end of the EYA4 gene for eyes absent
             homolog 4 (Drosophila) (Deafness, autosomal nonsyndromic
             sensorineural, 10 (DFNA10)) and a novel gene. Contains a
             CpG island, complete sequence
          Length = 136377

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    aacagaaatagtagcaataa 78
             ||||||||||||||||||||
Sbjct: 88449 aacagaaatagtagcaataa 88430
to top
>gb|BC030588.2| Homo sapiens eyes absent homolog 4 (Drosophila), mRNA (cDNA clone
            IMAGE:4824107)
          Length = 2514

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   aacagaaatagtagcaataa 78
            ||||||||||||||||||||
Sbjct: 1908 aacagaaatagtagcaataa 1889
to top
>gb|AC011448.5| Homo sapiens chromosome 19 clone CTC-260F20, complete sequence
          Length = 165122

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   tccctccttggtcacatgac 236
             ||||||||||||||||||||
Sbjct: 51530 tccctccttggtcacatgac 51511
to top
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0011L14, complete sequence
          Length = 117974

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 230   acatgacgctgcacgagttggggttctcgtcg 261
             ||||||||  ||| ||||||||||||||||||
Sbjct: 67517 acatgacggcgcaggagttggggttctcgtcg 67486
to top
>gb|BC109639.1| Bos taurus transcription factor-like 1, mRNA (cDNA clone MGC:134217
           IMAGE:8050148), complete cds
          Length = 1325

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 402 ctgcattggctgcgcgtgctggga 425
           ||||||||||||| ||||||||||
Sbjct: 753 ctgcattggctgcccgtgctggga 776
to top
>gb|AY268590.1| Homo sapiens BCL2/adenovirus E1B 19kDa interacting protein 2 (BNIP2)
            gene, complete cds
          Length = 27985

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 49   ctctatttagaacagaaatagtag 72
            |||| |||||||||||||||||||
Sbjct: 5139 ctctgtttagaacagaaatagtag 5116
to top
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15,
              complete sequence
          Length = 166282

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 230    acatgacgctgcacgagttggggttctcgtcg 261
              ||||||||  ||| ||||||||||||||||||
Sbjct: 166231 acatgacggcgcaggagttggggttctcgtcg 166262
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       tatttagaacagaaatagta 71
                ||||||||||||||||||||
Sbjct: 28403761 tatttagaacagaaatagta 28403780
to top
>ref|NM_001015658.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA
          Length = 1347

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 402 ctgcattggctgcgcgtgctggga 425
           ||||||||||||| ||||||||||
Sbjct: 788 ctgcattggctgcccgtgctggga 811
to top
>gb|AC092755.4| Homo sapiens chromosome 15 clone RP11-361D15 map 15q22, complete sequence
          Length = 187429

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 49     ctctatttagaacagaaatagtag 72
              |||| |||||||||||||||||||
Sbjct: 106504 ctctgtttagaacagaaatagtag 106527
to top
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0519D04
          Length = 193068

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tatttagaacagaaatagta 71
              ||||||||||||||||||||
Sbjct: 118861 tatttagaacagaaatagta 118880
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 556    accggctgcggcgcgttgta 575
              ||||||||||||||||||||
Sbjct: 898633 accggctgcggcgcgttgta 898614
to top
>dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G06, full
           insert sequence
          Length = 822

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 230 acatgacgctgcacgagttggggttctcgtcg 261
           ||||||||  ||| ||||||||||||||||||
Sbjct: 545 acatgacggcgcaggagttggggttctcgtcg 514
to top
>gb|BT020964.1| Bos taurus transcription factor-like 1 (TCFL1), mRNA, complete cds
          Length = 1347

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 402 ctgcattggctgcgcgtgctggga 425
           ||||||||||||| ||||||||||
Sbjct: 788 ctgcattggctgcccgtgctggga 811
to top
>emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, complete sequence
          Length = 174143

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tatttagaacagaaatagta 71
              ||||||||||||||||||||
Sbjct: 173249 tatttagaacagaaatagta 173230



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tatttagaacagaaatagta 71
              ||||||||||||||||||||
Sbjct: 171378 tatttagaacagaaatagta 171359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,742,519
Number of Sequences: 3902068
Number of extensions: 3742519
Number of successful extensions: 72802
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72314
Number of HSP's gapped (non-prelim): 483
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top