ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30k07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450936.1| Oryza sativa (japonica cultivar-group), mRNA 188 2e-44
2dbj|AK122120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 2e-44
3ref|XM_450937.1| Oryza sativa (japonica cultivar-group), mRNA 186 6e-44
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
5dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
6dbj|AK109479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
7gb|AY108179.1| Zea mays PCO089911 mRNA sequence 121 3e-24
8gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, comp... 46 0.14
9gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region ... 46 0.14
10gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B ... 46 0.14
11emb|Z47814.1|SC9813 S.cerevisiae chromosome IV cosmid 9813 44 0.57
12emb|X95966.1|SC354CHIV S.cerevisiae 35.4kb DNA region on left ar... 44 0.57
13gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplas... 44 0.57
14emb|Z74323.1|SCYDR027C S.cerevisiae chromosome IV reading frame ... 44 0.57
15gb|DQ332951.1| Synthetic construct Saccharomyces cerevisiae clon... 44 0.57
16emb|BX927353.7| Zebrafish DNA sequence from clone CH211-83F14 in... 42 2.2
17emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chro... 42 2.2
18gb|AC084454.1|AC084454 Caenorhabditis briggsae cosmid CB027J01, ... 42 2.2
19emb|AJ329656.1|HSA329656 Homo sapiens genomic sequence surroundi... 42 2.2
20dbj|D00906.1|NVMV2 Nicotiana velutina mosaic virus gene for caps... 42 2.2
21gb|AC154655.2| Mus musculus BAC clone RP24-263O11 from chromosom... 40 8.9
22emb|BX927368.13| Zebrafish DNA sequence from clone CH211-15J16 i... 40 8.9
23emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chr... 40 8.9
24gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Ca... 40 8.9
25dbj|AB127977.1| Buergeria buergeri mitochondrial DNA, complete g... 40 8.9
26emb|BX950866.15| Zebrafish DNA sequence from clone DKEY-3J24 in ... 40 8.9
27emb|BX510950.14| Zebrafish DNA sequence from clone DKEY-103D23 i... 40 8.9
28emb|BX510959.9| Zebrafish DNA sequence from clone CH211-51A19 in... 40 8.9
29gb|DQ209837.1| Maxillaria sp. Whitten 2904 atpB-rbcL intergenic ... 40 8.9
30emb|AL645794.12| Mouse DNA sequence from clone RP23-129E1 on chr... 40 8.9 
>ref|XM_450936.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2035

 Score =  188 bits (95), Expect = 2e-44
 Identities = 274/334 (82%), Gaps = 6/334 (1%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 378
            ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1566 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 1507

                                                                        
Query: 379  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 438
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1506 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1447

                                                                        
Query: 439  ctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggctcgacgaat 498
            |||||| ||| || ||||| |||||||||||||| ||  | || ||||| || || ||||
Sbjct: 1446 ctgtcagtgcatcaactataccacattcatcctgatctgctgatctctgacttgatgaat 1387

                                                                        
Query: 499  ctgaagcggatgactcacaatgtgacctaattctgtcccatgcaattctgggtgctacaa 558
            ||||||    |||||| |||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 1386 ctgaagatattgactcgcaatgtaacctaattctgtcccatgtaattctgggtgctacga 1327

                                                                        
Query: 559  tcttgttag------tgacattaggagttacagccttcagggtacattccgtgtagaaca 612
            | |||||||      | | ||||| ||||||||||||||  |  || || ||||||||||
Sbjct: 1326 tattgttagtaatactcaaattagcagttacagccttcaaagggcactctgtgtagaaca 1267

                                              
Query: 613  acacccatggatgacaaagaacttgatcagcagt 646
              |||||||| |||| ||||||||  ||||||||
Sbjct: 1266 cgacccatgggtgactaagaacttcgtcagcagt 1233



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 227  gttattatcctcagcacagagaca 250
            ||||||||||||||| ||||||||
Sbjct: 1679 gttattatcctcagctcagagaca 1656
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>dbj|AK122120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129G18, full
            insert sequence
          Length = 2035

 Score =  188 bits (95), Expect = 2e-44
 Identities = 274/334 (82%), Gaps = 6/334 (1%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 378
            ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1566 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 1507

                                                                        
Query: 379  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 438
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1506 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1447

                                                                        
Query: 439  ctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggctcgacgaat 498
            |||||| ||| || ||||| |||||||||||||| ||  | || ||||| || || ||||
Sbjct: 1446 ctgtcagtgcatcaactataccacattcatcctgatctgctgatctctgacttgatgaat 1387

                                                                        
Query: 499  ctgaagcggatgactcacaatgtgacctaattctgtcccatgcaattctgggtgctacaa 558
            ||||||    |||||| |||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 1386 ctgaagatattgactcgcaatgtaacctaattctgtcccatgtaattctgggtgctacga 1327

                                                                        
Query: 559  tcttgttag------tgacattaggagttacagccttcagggtacattccgtgtagaaca 612
            | |||||||      | | ||||| ||||||||||||||  |  || || ||||||||||
Sbjct: 1326 tattgttagtaatactcaaattagcagttacagccttcaaagggcactctgtgtagaaca 1267

                                              
Query: 613  acacccatggatgacaaagaacttgatcagcagt 646
              |||||||| |||| ||||||||  ||||||||
Sbjct: 1266 cgacccatgggtgactaagaacttcgtcagcagt 1233



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 227  gttattatcctcagcacagagaca 250
            ||||||||||||||| ||||||||
Sbjct: 1679 gttattatcctcagctcagagaca 1656
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>ref|XM_450937.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2059

 Score =  186 bits (94), Expect = 6e-44
 Identities = 211/250 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 378
            ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1740 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 1681

                                                                        
Query: 379  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 438
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1680 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1621

                                                                        
Query: 439  ctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggctcgacgaat 498
            |||||| ||| || ||||| |||||||||||||| ||  | || ||||| || || ||||
Sbjct: 1620 ctgtcagtgcatcaactataccacattcatcctgatctgctgatctctgacttgatgaat 1561

                                                                        
Query: 499  ctgaagcggatgactcacaatgtgacctaattctgtcccatgcaattctgggtgctacaa 558
            ||||||    |||||| |||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 1560 ctgaagatattgactcgcaatgtaacctaattctgtcccatgtaattctgggtgctacga 1501

                      
Query: 559  tcttgttagt 568
            | ||||||||
Sbjct: 1500 tattgttagt 1491



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 227  gttattatcctcagcacagagaca 250
            ||||||||||||||| ||||||||
Sbjct: 1853 gttattatcctcagctcagagaca 1830
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  186 bits (94), Expect = 6e-44
 Identities = 211/250 (84%)
 Strand = Plus / Plus

                                                                            
Query: 319      gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 378
                ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 17680407 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 17680466

                                                                            
Query: 379      tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 438
                || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 17680467 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 17680526

                                                                            
Query: 439      ctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggctcgacgaat 498
                |||||| ||| || ||||| |||||||||||||| ||  | || ||||| || || ||||
Sbjct: 17680527 ctgtcagtgcatcaactataccacattcatcctgatctgctgatctctgacttgatgaat 17680586

                                                                            
Query: 499      ctgaagcggatgactcacaatgtgacctaattctgtcccatgcaattctgggtgctacaa 558
                ||||||    |||||| |||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 17680587 ctgaagatattgactcgcaatgtaacctaattctgtcccatgtaattctgggtgctacga 17680646

                          
Query: 559      tcttgttagt 568
                | ||||||||
Sbjct: 17680647 tattgttagt 17680656



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 227      gttattatcctcagcacagagaca 250
                ||||||||||||||| ||||||||
Sbjct: 17680294 gttattatcctcagctcagagaca 17680317
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>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1005_D12
          Length = 150588

 Score =  186 bits (94), Expect = 6e-44
 Identities = 211/250 (84%)
 Strand = Plus / Plus

                                                                          
Query: 319    gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 378
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 129129 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 129188

                                                                          
Query: 379    tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 438
              || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 129189 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 129248

                                                                          
Query: 439    ctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggctcgacgaat 498
              |||||| ||| || ||||| |||||||||||||| ||  | || ||||| || || ||||
Sbjct: 129249 ctgtcagtgcatcaactataccacattcatcctgatctgctgatctctgacttgatgaat 129308

                                                                          
Query: 499    ctgaagcggatgactcacaatgtgacctaattctgtcccatgcaattctgggtgctacaa 558
              ||||||    |||||| |||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 129309 ctgaagatattgactcgcaatgtaacctaattctgtcccatgtaattctgggtgctacga 129368

                        
Query: 559    tcttgttagt 568
              | ||||||||
Sbjct: 129369 tattgttagt 129378



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 227    gttattatcctcagcacagagaca 250
              ||||||||||||||| ||||||||
Sbjct: 129016 gttattatcctcagctcagagaca 129039
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>dbj|AK109479.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H01, full
            insert sequence
          Length = 2059

 Score =  178 bits (90), Expect = 1e-41
 Identities = 210/250 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 378
            ||||||| ||||| || |||||||||||||||||||| |||||  |||||||||||||||
Sbjct: 1740 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcatccctgctgtatgggaa 1681

                                                                        
Query: 379  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 438
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1680 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1621

                                                                        
Query: 439  ctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggctcgacgaat 498
            |||||| ||| || ||||| |||||||||||||| ||  | || ||||| || || ||||
Sbjct: 1620 ctgtcagtgcatcaactataccacattcatcctgatctgctgatctctgacttgatgaat 1561

                                                                        
Query: 499  ctgaagcggatgactcacaatgtgacctaattctgtcccatgcaattctgggtgctacaa 558
            ||||||    |||||| |||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 1560 ctgaagatattgactcgcaatgtaacctaattctgtcccatgtaattctgggtgctacga 1501

                      
Query: 559  tcttgttagt 568
            | ||||||||
Sbjct: 1500 tattgttagt 1491



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 227  gttattatcctcagcacagagaca 250
            ||||||||||||||| ||||||||
Sbjct: 1853 gttattatcctcagctcagagaca 1830
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>gb|AY108179.1| Zea mays PCO089911 mRNA sequence
          Length = 1203

 Score =  121 bits (61), Expect = 3e-24
 Identities = 148/177 (83%)
 Strand = Plus / Minus

                                                                       
Query: 314 gtcatgtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtat 373
           |||| ||||||| |||||||| || ||  ||||||||||||| ||||| |||||||| ||
Sbjct: 903 gtcaggtcagaaagccgtgcaaagattattcttcaagtttgacgagcattcctgctgaat 844

                                                                       
Query: 374 gggaatgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttat 433
           || |||  ||||||| || || ||  | || || |||||||||||||||||| |||||||
Sbjct: 843 ggtaattgcggggctacagagccgacttctctttggctctgatattctaacacgtgttat 784

                                                                    
Query: 434 tgccgctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggct 490
           ||| || | ||||||||| ||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 783 tgctgccgccaatgcgtcaactatgccacactcatcctgatcctctgacctttggct 727



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 530 tctgtcccatgcaattctgggtgctacaatcttgttag 567
           ||||||||||| |||| ||||||||| || ||||||||
Sbjct: 693 tctgtcccatggaattttgggtgctataaccttgttag 656
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>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence
          Length = 197483

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 231   ttatcctcagcacagagacaacc 253
             |||||||||||||||||||||||
Sbjct: 84348 ttatcctcagcacagagacaacc 84370
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>gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 185763

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 231 ttatcctcagcacagagacaacc 253
           |||||||||||||||||||||||
Sbjct: 593 ttatcctcagcacagagacaacc 571
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>gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B sequence
          Length = 110434

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 231    ttatcctcagcacagagacaacc 253
              |||||||||||||||||||||||
Sbjct: 107466 ttatcctcagcacagagacaacc 107444
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>emb|Z47814.1|SC9813 S.cerevisiae chromosome IV cosmid 9813
          Length = 14825

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 52   tatgtttactagcatagactgaaatt 77
            ||||||||||||||| ||||||||||
Sbjct: 7209 tatgtttactagcatggactgaaatt 7234
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>emb|X95966.1|SC354CHIV S.cerevisiae 35.4kb DNA region on left arm of chromosome IV
          Length = 35452

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 52    tatgtttactagcatagactgaaatt 77
             ||||||||||||||| ||||||||||
Sbjct: 32550 tatgtttactagcatggactgaaatt 32575
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>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome
          Length = 164921

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 627    caaagaacttgatcagcagtta 648
              ||||||||||||||||||||||
Sbjct: 139801 caaagaacttgatcagcagtta 139780
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>emb|Z74323.1|SCYDR027C S.cerevisiae chromosome IV reading frame ORF YDR027c
          Length = 3566

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 52   tatgtttactagcatagactgaaatt 77
            ||||||||||||||| ||||||||||
Sbjct: 1389 tatgtttactagcatggactgaaatt 1414
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>gb|DQ332951.1| Synthetic construct Saccharomyces cerevisiae clone FLH001385.01X
            VPS54 gene, complete sequence
          Length = 2670

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 52   tatgtttactagcatagactgaaatt 77
            ||||||||||||||| ||||||||||
Sbjct: 1662 tatgtttactagcatggactgaaatt 1637
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>emb|BX927353.7| Zebrafish DNA sequence from clone CH211-83F14 in linkage group 2,
             complete sequence
          Length = 94558

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 541   caattctgggtgctacaatct 561
             |||||||||||||||||||||
Sbjct: 25464 caattctgggtgctacaatct 25444
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>emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chromosome 6 Contains the
             SOX4 gene for SRY (sex determining region Y)-box 4, a
             novel pseudogene and CpG islands, complete sequence
          Length = 128728

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    tctcaagatataaattagcta 109
             |||||||||||||||||||||
Sbjct: 53230 tctcaagatataaattagcta 53210
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>gb|AC084454.1|AC084454 Caenorhabditis briggsae cosmid CB027J01, complete sequence
          Length = 59777

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 615   acccatggatgacaaagaact 635
             |||||||||||||||||||||
Sbjct: 55634 acccatggatgacaaagaact 55614
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>emb|AJ329656.1|HSA329656 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-QP21C
          Length = 664

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 355 aggagcactcctgctgtatgggaat 379
           ||||||||||||| |||||||||||
Sbjct: 437 aggagcactcctgttgtatgggaat 461
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>dbj|D00906.1|NVMV2 Nicotiana velutina mosaic virus gene for capsid protein and
           membrane proteins, complete cds
          Length = 2325

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 627 caaagaacttgatcagcagtt 647
           |||||||||||||||||||||
Sbjct: 235 caaagaacttgatcagcagtt 255
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>gb|AC154655.2| Mus musculus BAC clone RP24-263O11 from chromosome 14, complete
             sequence
          Length = 196744

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 559   tcttgttagtgacattagga 578
             ||||||||||||||||||||
Sbjct: 12875 tcttgttagtgacattagga 12894
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>emb|BX927368.13| Zebrafish DNA sequence from clone CH211-15J16 in linkage group 23,
              complete sequence
          Length = 176438

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     tgaaattattctcaacactctcaa 94
              ||||||||||||||||| ||||||
Sbjct: 152756 tgaaattattctcaacagtctcaa 152733
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>emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chromosome 13 Contains the
             5' end of the HTR2A gene for 5-hydroxytryptamine
             (serotonin) receptor 2A and a novel gene, complete
             sequence
          Length = 204056

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 290   aacacaaggaagctatacattggt 313
             |||||| |||||||||||||||||
Sbjct: 96468 aacacatggaagctatacattggt 96491
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>gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204425

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 356    ggagcactcctgctgtatgggaat 379
              |||||||||||| |||||||||||
Sbjct: 132540 ggagcactcctgttgtatgggaat 132563
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>dbj|AB127977.1| Buergeria buergeri mitochondrial DNA, complete genome
          Length = 19959

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   atcattctatttacaaaatt 134
             ||||||||||||||||||||
Sbjct: 16278 atcattctatttacaaaatt 16297
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>emb|BX950866.15| Zebrafish DNA sequence from clone DKEY-3J24 in linkage group 19,
             complete sequence
          Length = 96656

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   tagtgacattaggagttaca 584
             ||||||||||||||||||||
Sbjct: 45919 tagtgacattaggagttaca 45938
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>emb|BX510950.14| Zebrafish DNA sequence from clone DKEY-103D23 in linkage group 14,
             complete sequence
          Length = 80102

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tgaaattattctcaacactctcaa 94
             ||||||||||||||||| ||||||
Sbjct: 23584 tgaaattattctcaacagtctcaa 23607
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>emb|BX510959.9| Zebrafish DNA sequence from clone CH211-51A19 in linkage group 20,
              complete sequence
          Length = 179085

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     tgaaattattctcaacactctcaa 94
              ||||||||||||||||| ||||||
Sbjct: 137015 tgaaattattctcaacagtctcaa 137038
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>gb|DQ209837.1| Maxillaria sp. Whitten 2904 atpB-rbcL intergenic spacer, partial
           sequence; chloroplast
          Length = 882

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 ttctatttacaaaatttaca 138
           ||||||||||||||||||||
Sbjct: 345 ttctatttacaaaatttaca 364
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>emb|AL645794.12| Mouse DNA sequence from clone RP23-129E1 on chromosome 2, complete
             sequence
          Length = 75020

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   atttacagcatcagctacca 151
             ||||||||||||||||||||
Sbjct: 32081 atttacagcatcagctacca 32100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,599,788
Number of Sequences: 3902068
Number of extensions: 5599788
Number of successful extensions: 110562
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110448
Number of HSP's gapped (non-prelim): 101
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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