ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30j17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBR2_HUMAN (Q8IWV8) Ubiquitin-protein ligase E3 component N-reco... 30 4.6
2PGLRX_ASPTU (Q00293) Exopolygalacturonase precursor (EC 3.2.1.67... 30 6.1
3RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7 29 7.9

>UBR2_HUMAN (Q8IWV8) Ubiquitin-protein ligase E3 component N-recognin-2 (EC|
           6.-.-.-) (Ubiquitin-protein ligase E3-alpha-2)
           (Ubiquitin-protein ligase E3-alpha-II)
          Length = 1755

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 429 GEQQNPNGDRGGHLGN*MLSNKLLWLKLRPVYHE 328
           G Q+ P+G+    +   MLS+  LW   R VYH+
Sbjct: 339 GLQEGPDGENSSLVDRLMLSDSKLWKGARSVYHQ 372



to top

>PGLRX_ASPTU (Q00293) Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)|
           (Galacturan 1,4-alpha-galacturonidase)
           (Poly(1,4-alpha-D-galacturonide)galacturonohydrolase)
          Length = 435

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 270 SPLLFSHLNITKPTRFNHLVRDTLDEALAIITCLIAS 380
           S +  S++N+T P   N  V D +DE+L  + C   S
Sbjct: 398 SDIYTSNINVTSPDGTNDFVCDNVDESLLSVNCTATS 434



to top

>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   NPTNK*EYSNRTPIQNQSPSPSTTHNQSTSS 101
           NPT K   +  +P+QN +P+PST  N S +S
Sbjct: 354 NPTIKVTAAIPSPLQNTNPAPSTFPNPSVAS 384


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,627,307
Number of Sequences: 219361
Number of extensions: 1373444
Number of successful extensions: 3626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3618
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top