Clone Information

BLAST Search Result

Clone Name	rbags30j16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)	249	7e-66
2	RS3A_HELAN (P49198) 40S ribosomal protein S3a	223	5e-58
3	RS3A_ARATH (Q42262) 40S ribosomal protein S3a	223	5e-58
4	RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)	220	3e-57
5	RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific ...	213	4e-55
6	RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a	180	4e-45
7	RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformat...	179	7e-45
8	RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a	179	7e-45
9	RS3A_XENTR (Q642T2) 40S ribosomal protein S3a	177	2e-44
10	RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a	177	2e-44
11	RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a	177	3e-44
12	RS3A_HUMAN (P61247) 40S ribosomal protein S3a	177	3e-44
13	RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)	177	3e-44
14	RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a	177	3e-44
15	RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)	177	3e-44
16	RS3A_XENLA (Q801S3) 40S ribosomal protein S3a	177	3e-44
17	RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformatio...	177	3e-44
18	RS3A_MOUSE (P97351) 40S ribosomal protein S3a	177	3e-44
19	RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a	176	6e-44
20	RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a	176	6e-44
21	RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)	169	5e-42
22	RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich prote...	166	6e-41
23	RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)	166	8e-41
24	RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)	164	2e-40
25	RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)	153	5e-37
26	RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)	152	9e-37
27	RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)	145	1e-34
28	RS3A_CAEEL (P48154) 40S ribosomal protein S3a	145	1e-34
29	RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)	144	3e-34
30	RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae	57	4e-08
31	RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae	56	9e-08
32	RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae	55	3e-07
33	RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae	54	3e-07
34	RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae	54	4e-07
35	RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae	54	6e-07
36	RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae	52	2e-06
37	RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae	52	2e-06
38	RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae	51	3e-06
39	RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae	51	4e-06
40	RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae	47	7e-05
41	RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae	46	9e-05
42	RS3A_METTH (O27630) 30S ribosomal protein S3Ae	46	1e-04
43	RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae	45	3e-04
44	RS3A_METJA (P54059) 30S ribosomal protein S3Ae	43	8e-04
45	RS3A_AERPE (Q9YCV8) 30S ribosomal protein S3Ae	40	0.006
46	RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae	40	0.008
47	RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae	32	1.8
48	DXR_PROMM (Q7V6J8) 1-deoxy-D-xylulose 5-phosphate reductoisomera...	31	3.9
49	SUHW_DROVI (Q08876) Protein suppressor of hairy wing	30	5.1
50	NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1...	30	6.7
51	RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae	30	8.7
52	NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1...	30	8.7

>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 261

 Score =  249 bits (635), Expect = 7e-66
 Identities = 122/130 (93%), Positives = 127/130 (97%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQTLIEAHVDVKTTD YMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA
Sbjct: 116 WQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
           S+CDLKELVSKFIPEVIGKEIEKATSSIFPLQNV+VRKVKILKAPKFD+GKLMEVHGDY 
Sbjct: 176 SSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYA 235

Query: 315 KEDVGVKLER 286
           KED+G KL+R
Sbjct: 236 KEDIGTKLDR 245

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>RS3A_HELAN (P49198) 40S ribosomal protein S3a|
          Length = 259

 Score =  223 bits (567), Expect = 5e-58
 Identities = 109/130 (83%), Positives = 121/130 (93%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQ+LIEAHVDVKTTDN+ LR+FCIGFTK+R NQVKRTCYAQ+SQI+QIRRKM EIM  QA
Sbjct: 116 WQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQA 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            TCDLKELV KFIPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFDIGKLMEVHGDY+
Sbjct: 176 QTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYS 235

Query: 315 KEDVGVKLER 286
            EDVGVKL+R
Sbjct: 236 -EDVGVKLDR 244

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>RS3A_ARATH (Q42262) 40S ribosomal protein S3a|
          Length = 261

 Score =  223 bits (567), Expect = 5e-58
 Identities = 106/130 (81%), Positives = 118/130 (90%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQTLIEAHVDVKTTD Y LR+FCI FTKRR NQVKRTCYAQ+SQIRQIRRKM EIM  +A
Sbjct: 116 WQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEA 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
           S+CDLKELV+KFIPE IG+EIEKAT  I+PLQNV++RKVKILKAPKFD+GKLMEVHGDY 
Sbjct: 176 SSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYT 235

Query: 315 KEDVGVKLER 286
            EDVGVK++R
Sbjct: 236 AEDVGVKVDR 245

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>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 259

 Score =  220 bits (560), Expect = 3e-57
 Identities = 106/130 (81%), Positives = 120/130 (92%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQ+LIEAHVDVKTTD+Y LR+FCIGFTK+R NQ KRTCYAQ+SQIRQIRRKM EIM NQA
Sbjct: 116 WQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQA 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            +CDLK+LV KFIPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFD+GKLMEVHGDYN
Sbjct: 176 QSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYN 235

Query: 315 KEDVGVKLER 286
            ED+G KL+R
Sbjct: 236 -EDIGTKLDR 244

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>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein|
           BIS289)
          Length = 261

 Score =  213 bits (542), Expect = 4e-55
 Identities = 105/131 (80%), Positives = 117/131 (89%), Gaps = 1/131 (0%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQ- 499
           WQTLIE+HVDVKTTDNY LRLFCI FTKRR NQVKRTCYAQ+SQIRQIR KM EIM  + 
Sbjct: 116 WQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEE 175

Query: 498 ASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDY 319
           AS+CDLKELV+KFIPE IGK+IEKAT  I+PLQNV++RKVKILKAPKFD+ KLMEVHGDY
Sbjct: 176 ASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDY 235

Query: 318 NKEDVGVKLER 286
             EDVGVK++R
Sbjct: 236 TAEDVGVKVDR 246

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>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a|
          Length = 265

 Score =  180 bits (456), Expect = 4e-45
 Identities = 86/138 (62%), Positives = 109/138 (78%), Gaps = 8/138 (5%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTKRR NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKRRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD-- 322
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 321 ------YNKEDVGVKLER 286
                    +D G K+ER
Sbjct: 236 AGTAAKATGDDTGAKVER 253

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>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector|
           protein)
          Length = 265

 Score =  179 bits (454), Expect = 7e-45
 Identities = 85/138 (61%), Positives = 110/138 (79%), Gaps = 8/138 (5%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQV++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD-- 322
            T DLKE+V+K IP+ +GK+IEKA  SI+PL +VYVRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 321 ------YNKEDVGVKLER 286
                  + +D G K+ER
Sbjct: 236 AGGAAKASGDDTGAKVER 253

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>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a|
          Length = 263

 Score =  179 bits (454), Expect = 7e-45
 Identities = 84/136 (61%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAH+DVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KMVEIM  + 
Sbjct: 116 WQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD-- 322
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 321 ----YNKEDVGVKLER 286
                + ++ G K+ER
Sbjct: 236 GSGKPSGDETGAKVER 251

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>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a|
          Length = 263

 Score =  177 bits (450), Expect = 2e-44
 Identities = 84/136 (61%), Positives = 109/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 315 ------KEDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 GAGKPAGDETGAKVER 251

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>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a|
          Length = 266

 Score =  177 bits (450), Expect = 2e-44
 Identities = 84/139 (60%), Positives = 109/139 (78%), Gaps = 9/139 (6%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ +GK+IEKA  SI+PL +VYVRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 315 ---------KEDVGVKLER 286
                    + D G K+ER
Sbjct: 236 STSAAAKPAEGDTGAKVER 254

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>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a|
          Length = 263

 Score =  177 bits (449), Expect = 3e-44
 Identities = 83/136 (61%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF++GKLME+HG+ +
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS 235

Query: 315 K------EDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 SSGKATGDETGAKVER 251

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>RS3A_HUMAN (P61247) 40S ribosomal protein S3a|
          Length = 263

 Score =  177 bits (449), Expect = 3e-44
 Identities = 83/136 (61%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF++GKLME+HG+ +
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS 235

Query: 315 K------EDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 SSGKATGDETGAKVER 251

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>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)|
          Length = 263

 Score =  177 bits (449), Expect = 3e-44
 Identities = 84/136 (61%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEF 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD-- 322
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 321 ----YNKEDVGVKLER 286
                + ++ G K+ER
Sbjct: 236 GAGKPSGDEAGAKVER 251

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>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a|
          Length = 263

 Score =  177 bits (449), Expect = 3e-44
 Identities = 83/136 (61%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF++GKLME+HG+ +
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS 235

Query: 315 K------EDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 SSGKATGDETGAKVER 251

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>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)|
          Length = 260

 Score =  177 bits (449), Expect = 3e-44
 Identities = 83/136 (61%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 113 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 172

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF++GKLME+HG+ +
Sbjct: 173 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS 232

Query: 315 K------EDVGVKLER 286
                  ++ G K+ER
Sbjct: 233 SSGKATGDETGAKVER 248

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>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a|
          Length = 263

 Score =  177 bits (448), Expect = 3e-44
 Identities = 84/136 (61%), Positives = 108/136 (79%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 315 ------KEDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 GTGKPAGDETGAKVER 251

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>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector|
           protein) [Contains: 40S ribosomal protein S3b]
          Length = 263

 Score =  177 bits (448), Expect = 3e-44
 Identities = 83/136 (61%), Positives = 109/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 315 K------EDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 SSGKTTGDETGAKVER 251

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>RS3A_MOUSE (P97351) 40S ribosomal protein S3a|
          Length = 263

 Score =  177 bits (448), Expect = 3e-44
 Identities = 83/136 (61%), Positives = 109/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF++GKLME+HG+  
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGG 235

Query: 315 K------EDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 SSGKAAGDETGAKVER 251

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>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a|
          Length = 247

 Score =  176 bits (446), Expect = 6e-44
 Identities = 91/129 (70%), Positives = 108/129 (83%), Gaps = 1/129 (0%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQ+LI+AHVDVKTTDNY +R+FCI FTK+RPN   R  YAQ+SQI  IRRKM EIM  +A
Sbjct: 115 WQSLIQAHVDVKTTDNYQIRIFCIAFTKKRPNHT-RNFYAQSSQIA-IRRKMREIMVKEA 172

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSS-IFPLQNVYVRKVKILKAPKFDIGKLMEVHGDY 319
            TCDLKELV+KFIPEVIGKEI++  S  I+PLQ+ ++RKVKILKAPKFD+ KLMEVHGDY
Sbjct: 173 QTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDY 232

Query: 318 NKEDVGVKL 292
           N E+VG K+
Sbjct: 233 N-EEVGAKI 240

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>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a|
          Length = 263

 Score =  176 bits (446), Expect = 6e-44
 Identities = 82/136 (60%), Positives = 110/136 (80%), Gaps = 6/136 (4%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT+IEAHVDVKTTD Y+LRLFC+GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  + 
Sbjct: 116 WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
            T DLKE+V+K IP+ IGK++EKA  SI+PL +V+VRKVK+LK PKF++GKLME+HG+ +
Sbjct: 176 QTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS 235

Query: 315 K------EDVGVKLER 286
                  ++ G K+ER
Sbjct: 236 SSGKATGDETGAKVER 251

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>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)|
          Length = 251

 Score =  169 bits (429), Expect = 5e-42
 Identities = 83/128 (64%), Positives = 103/128 (80%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQT IEA   +KTTD Y+ R+F IGFT+RR NQVK+T YAQ+SQIR IR+KM +++ NQ 
Sbjct: 116 WQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQT 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
           S+C ++ELV K IPEVIG+EIE+AT SIFPLQNV VRKVKILKAPK D  KL+E+HG+  
Sbjct: 176 SSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-- 233

Query: 315 KEDVGVKL 292
            +DVG K+
Sbjct: 234 SQDVGTKV 241

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>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)|
          Length = 264

 Score =  166 bits (420), Expect = 6e-41
 Identities = 75/118 (63%), Positives = 101/118 (85%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQTLIEA+VDVKTTD Y+LR+F IGFTK+R NQVK+TCYAQ +Q++ IR+KMVEI++ + 
Sbjct: 116 WQTLIEANVDVKTTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD 322
           S+ D+KE+V+K IP+ IGK+IEK+   I+PL +V + KVK+LK PKFD+GKLME+HG+
Sbjct: 176 SSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGE 233

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>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)|
          Length = 255

 Score =  166 bits (419), Expect = 8e-41
 Identities = 75/128 (58%), Positives = 105/128 (82%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQ+L+EA+V VKT+D+Y+LR+F I FTKR+PNQ+K T YAQ+S++R+ R+KM+EI+  + 
Sbjct: 116 WQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKETTYAQSSKLREARKKMIEIIEREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
           S C L +L SK IPEVIG+EIEK+T +IFPLQNV++RKVK+LK PKFD G L+ +HG+ +
Sbjct: 176 SNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGS 235

Query: 315 KEDVGVKL 292
            E+ G K+
Sbjct: 236 TEEKGKKV 243

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>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)|
          Length = 251

 Score =  164 bits (415), Expect = 2e-40
 Identities = 80/128 (62%), Positives = 103/128 (80%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQ+ IEA+  +KTTD Y+ R+F IGFT RR NQVK+T YAQ+SQIR I +KM +++ NQA
Sbjct: 116 WQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQA 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
           + C +KELV K IPEVIG+ IEKAT++I+PLQNV+VRKVKILKAPK D  KL+E+HG+  
Sbjct: 176 NGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-- 233

Query: 315 KEDVGVKL 292
            +DVG K+
Sbjct: 234 SQDVGSKV 241

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>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)|
          Length = 254

 Score =  153 bits (386), Expect = 5e-37
 Identities = 74/128 (57%), Positives = 97/128 (75%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQTLIEA+V VKT+D+Y+LR+F I FT+++ NQVKR  YAQ+S IR IR+ + EI+  + 
Sbjct: 116 WQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
               L +L SK IPEVI KEIE AT  IFPLQN++VRKVK+LK PKFD+G LM +HG+ +
Sbjct: 176 QNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGS 235

Query: 315 KEDVGVKL 292
            E+ G K+
Sbjct: 236 GEEKGKKV 243

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>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)|
          Length = 254

 Score =  152 bits (384), Expect = 9e-37
 Identities = 74/128 (57%), Positives = 97/128 (75%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQTLIEA+V VKT+D+Y+LR+F I FT+++ NQVKR  YAQ+S IR IR+ + EI+  + 
Sbjct: 116 WQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEV 175

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYN 316
               L +L SK IPEVI KEIE AT  IFPLQN++VRKVK+LK PKFD+G LM +HG+ +
Sbjct: 176 QGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGS 235

Query: 315 KEDVGVKL 292
            E+ G K+
Sbjct: 236 GEEKGKKV 243

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>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)|
          Length = 267

 Score =  145 bits (366), Expect = 1e-34
 Identities = 65/118 (55%), Positives = 90/118 (76%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQTLIEA V+ KT D Y+LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+ N+ 
Sbjct: 119 WQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEV 178

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD 322
           S  DLK+LV+K   + I K+IEK+   I+PL +VY+RKVK+LK P+FD+ KL+E+HGD
Sbjct: 179 SGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 236

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>RS3A_CAEEL (P48154) 40S ribosomal protein S3a|
          Length = 256

 Score =  145 bits (365), Expect = 1e-34
 Identities = 67/118 (56%), Positives = 90/118 (76%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           W TLIEA+  VKTTD Y LR+F I FTK+  NQVK+T Y + S+IR+IR +M+  +  + 
Sbjct: 114 WHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEV 173

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD 322
           + CDLKE+VSK IP+ IGK+IEK  S ++PLQ VY+RKVKI+K PK D+G+L ++HGD
Sbjct: 174 TGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGD 231

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>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)|
          Length = 268

 Score =  144 bits (362), Expect = 3e-34
 Identities = 66/118 (55%), Positives = 88/118 (74%)
 Frame = -2

Query: 675 WQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQA 496
           WQTLIE  VDVKTTD +MLR+FCIGFT +     ++TCYAQ SQI+ IR KM  I+  + 
Sbjct: 119 WQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREI 178

Query: 495 STCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGD 322
           ++ DLK +V K +P+ I K+IEKA   ++PL +VY+RKVK+LK P+FD+  LME+HGD
Sbjct: 179 TSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236

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>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae|
          Length = 211

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           I+  +DV T D Y +R+  + FT RR         A+ SQ R IR++M +++   A  CD
Sbjct: 96  IDGVIDVVTKDGYKVRVAGLAFTTRR---------AKTSQQRAIRKEMFKVIEENAKECD 146

Query: 483 LKELVSKFIP----EVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
             E + + +     E I ++I++A   I+P++   +RK ++L+ P
Sbjct: 147 FDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEP 191

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>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae|
          Length = 198

 Score = 56.2 bits (134), Expect = 9e-08
 Identities = 33/104 (31%), Positives = 52/104 (50%)
 Frame = -2

Query: 669 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAST 490
           T I+   ++ T D Y LR+  +    RR          Q SQ R IR+ M EI+  +A  
Sbjct: 101 TRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKKAEE 151

Query: 489 CDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 358
            + K+ V + +   I  EI K    I+PL+   +RK+K+L+ P+
Sbjct: 152 LNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195

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>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae|
          Length = 203

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 33/101 (32%), Positives = 56/101 (55%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           I+A+VDVKT D Y++R+    FT +R         A++SQ++ IR  MVEI+  +A+  D
Sbjct: 103 IDANVDVKTKDGYVIRVKPTCFTIKR---------ARSSQMQAIREMMVEIVKKRAAESD 153

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
            +  + + I   +   I +    I+PL+ V +RK ++   P
Sbjct: 154 FETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTEVETIP 194

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>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae|
          Length = 199

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 33/104 (31%), Positives = 51/104 (49%)
 Frame = -2

Query: 669 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAST 490
           T I+   ++ T D Y LR+  +    RR          Q SQ R IR+ M EI+  +A  
Sbjct: 103 TRIDGIFNITTKDGYRLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKKAEE 153

Query: 489 CDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 358
            + K+ V + +   I  EI K    I+PL+   +RK+K+L  P+
Sbjct: 154 LNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197

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>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae|
          Length = 199

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 33/104 (31%), Positives = 51/104 (49%)
 Frame = -2

Query: 669 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAST 490
           T I+   ++ T D Y LR+  +    RR          Q SQ R IR+ M EI+  +A  
Sbjct: 102 TRIDGIFNITTKDGYKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEE 152

Query: 489 CDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 358
            + K+ V + +   I  EI K    I+PL+   +RK+K+L  P+
Sbjct: 153 LNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196

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>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae|
          Length = 211

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 33/101 (32%), Positives = 53/101 (52%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           IE  VDV T D Y LR+  + FT RR          + SQ R IR  M +I+  +AS+ +
Sbjct: 106 IEDIVDVTTADGYKLRVKSVVFTVRR---------CKTSQKRAIRAIMRQIVVEKASSLN 156

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
             + + + +   +  EI K    I+P++ V +RK+++L  P
Sbjct: 157 FVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197

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>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae|
          Length = 204

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 31/101 (30%), Positives = 56/101 (55%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           I+A+VDV+T D +++R+    FT +R         A++SQ++ IR  MV+I+  +AS  D
Sbjct: 103 IDANVDVRTKDGFVIRVKPTCFTIKR---------ARSSQMQAIREMMVDIVKKRASETD 153

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
            +  + + I   +   I +    I+PL+ V +RK ++   P
Sbjct: 154 FETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194

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>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae|
          Length = 197

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 35/102 (34%), Positives = 49/102 (48%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           I A VDV T D YMLR+  +  T  R         A  SQ   IR+ + +I   +A   D
Sbjct: 104 INAVVDVTTKDGYMLRVKGLVLTTYR---------AHISQKTAIRKVISDITRKKAEESD 154

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 358
             + V   I   +  +I +    I+PL+ V + K K+LKAPK
Sbjct: 155 FDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196

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>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae|
          Length = 213

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 31/123 (25%), Positives = 62/123 (50%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           +EA++ V TTD+Y +++  +  T ++         A ASQ + IRR M++++   A    
Sbjct: 100 VEAYITVLTTDDYRVQIQPVAVTTKK---------ADASQEKAIRRTMIDLVRETAEDHT 150

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVHGDYNKEDV 304
            ++L+   +   +   I      I+PL+ V ++K  +   P+ ++    E   D ++EDV
Sbjct: 151 FEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTLEARPE-EVAAEEETAVDVDEEDV 209

Query: 303 GVK 295
            V+
Sbjct: 210 DVE 212

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>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae|
          Length = 193

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 33/101 (32%), Positives = 50/101 (49%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           I+A  DV T D Y+LR+  +  T  R         A  SQ  +IR+ +  I++ +AS   
Sbjct: 101 IDAITDVTTKDGYVLRVKGLALTTYR---------AHRSQKTEIRKIIWNILSTRASETT 151

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
             E V   +   +  +I +    I+PL+ V V K K+LKAP
Sbjct: 152 FDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192

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>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae|
          Length = 200

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 29/103 (28%), Positives = 49/103 (47%)
 Frame = -2

Query: 669 TLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAST 490
           T ++   ++ T D Y LR+  +    RR          Q SQ R IR+ + +I+  +A  
Sbjct: 105 TRVDGIFNITTKDGYKLRVMGMVIAYRR---------IQTSQERAIRKIIQDIIYKKAEE 155

Query: 489 CDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
            +  + V + +   I  EI K    I+P++   VRK+K+L  P
Sbjct: 156 LNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIKVLAEP 198

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>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae|
          Length = 221

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 23/101 (22%), Positives = 50/101 (49%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           + A  +VKT D  ++R+  +G T  R    +++          +R+KM+E +  +A+  D
Sbjct: 112 VTAITEVKTKDGMVMRIAVLGITTHRIGTAQKSA---------MRKKMIETLVKKAAELD 162

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
             + + + +   +  ++      I P++ V + K+K+LK P
Sbjct: 163 SGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVLKYP 203

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>RS3A_METTH (O27630) 30S ribosomal protein S3Ae|
          Length = 195

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 30/101 (29%), Positives = 51/101 (50%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           ++A V V+T D Y L++  +  T RR         A++SQ + +R+ + E +   AS   
Sbjct: 103 VDAPVIVETKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKT 153

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
            +ELV   +   I  EI      I+PL+ V + K ++L+ P
Sbjct: 154 FEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSRVLEEP 194

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>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae|
          Length = 208

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 29/110 (26%), Positives = 56/110 (50%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           I +  DV T D Y++R+  +  T  + +Q ++T          IR+ + E ++ +AS   
Sbjct: 102 INSIFDVTTKDGYVVRVKGLVLTTYKCHQSQKTA---------IRKIINETVSKKASELS 152

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLME 334
             +   + +   +  EI +A   I+PL+   + K K+LK P+ ++GK +E
Sbjct: 153 FDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201

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>RS3A_METJA (P54059) 30S ribosomal protein S3Ae|
          Length = 222

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 28/102 (27%), Positives = 49/102 (48%)
 Frame = -2

Query: 663 IEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCD 484
           I+A +DVKT D + +R   +  T  R N  +++          IR+KM EI+   A    
Sbjct: 110 IDAILDVKTQDGHKIRTKAMVLTAYRANTKQKS---------DIRKKMEEIIKAMAKEKT 160

Query: 483 LKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 358
             + V   +   + ++I+     IFP++NV + K ++L   K
Sbjct: 161 FPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKSEVLSLAK 202

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>RS3A_AERPE (Q9YCV8) 30S ribosomal protein S3Ae|
          Length = 221

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
 Frame = -2

Query: 648 DVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELV 469
           +V T D Y LR+  + FT++R          + SQ   IR+ M EI+  +A    L EL+
Sbjct: 112 NVWTKDGYGLRVTAMAFTRQR---------CKTSQKSAIRKVMQEIVEQKARESTLDELI 162

Query: 468 SKFI----PEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 361
              +       +   I+++   I+PL+ V + K K+L  P
Sbjct: 163 QLMVFSDHEGSLAYLIDESARKIYPLRKVEIAKSKLLWVP 202

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>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae|
          Length = 215

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 26/107 (24%), Positives = 51/107 (47%)
 Frame = -2

Query: 648 DVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELV 469
           DVKT+DN ++ +  +  T  +    K+          QIR+ + + + N+  +    E V
Sbjct: 109 DVKTSDNSIITVKIVVVTDGKVTNTKKF---------QIRKVLTDFILNKGLSLPYSEFV 159

Query: 468 SKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDIGKLMEVH 328
              I + I  ++  AT  I+PL+ + VRK +++      +  + E+H
Sbjct: 160 RYLIGDDIYNDMISATKDIYPLKKIEVRKSELV-----SLSGISEIH 201

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>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae|
          Length = 215

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 18/93 (19%), Positives = 46/93 (49%)
 Frame = -2

Query: 648 DVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELV 469
           DVKT+D  ++ +  +  +  +    K++         +IR+ +   + ++ S     + V
Sbjct: 109 DVKTSDGSIITVKIVVVSDGKLTNTKKS---------EIRKALTSFIVSKGSQLSYADFV 159

Query: 468 SKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 370
              I +    ++ +AT +I+PL+ + +RK +++
Sbjct: 160 RYLIGDDSYNDMVEATKNIYPLRKIEIRKSELV 192

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>DXR_PROMM (Q7V6J8) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 412

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 163 NQVYVVHNLESIAHTSYESRH*TSL--FSWSCNLNPCLICLSWPLQLHT 303
           NQ+ +V + +SI H+  E    + L    W     P L CLSWP +L T
Sbjct: 247 NQIEIVIHPQSIIHSMIELADSSVLGQLGWPDMKLPILYCLSWPERLET 295

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>SUHW_DROVI (Q08876) Protein suppressor of hairy wing|
          Length = 899

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = +1

Query: 205 TSYESRH*TSLFSWSCNLNPCLIC 276
           TSYE RH     SWSCN  PC IC
Sbjct: 301 TSYE-RHIFITHSWSCNDYPCSIC 323

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>NU5M_ANOQU (P33510) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 576

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 SLFSWSCNLNPCLICLSWPLQLHTDILLVVVTMYLHQLPNIKL 360
           S+ SW   LNP +ICL + L++ T  + ++  +  + L N+ L
Sbjct: 435 SMLSWLMFLNPSMICLPFDLKMLTLFVCILGGLIGYLLSNVSL 477

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>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/61 (19%), Positives = 32/61 (52%)
 Frame = -2

Query: 552 ASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 373
           A++  ++R K++  +  +  +  L EL    I + +  +I      ++P++ + +RK ++
Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190

Query: 372 L 370
           L
Sbjct: 191 L 191

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>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 580

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 SLFSWSCNLNPCLICLSWPLQLHTDILLVVVTMYLHQLPNIKL 360
           S+ SW   LNP +ICL   ++L T  + +V  +  + + ++KL
Sbjct: 439 SMLSWLMFLNPAMICLPLEMKLLTLFVCIVGGLMGYLISDVKL 481


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,018,149
Number of Sequences: 219361
Number of extensions: 1408971
Number of successful extensions: 4059
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 4000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4050
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result