ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2a08 |
|---|---|
| Clone Library Name | barley_pub |
>RUBR1_CHLTE (P58992) Rubredoxin 1 (Rd 1)| Length = 69 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 11/52 (21%) Frame = -2 Query: 354 RATHICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFARY 232 +A+ +C +CGYIY + PF++ P ++ CP CN PK +F ++ Sbjct: 14 QASWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65
>RUBR2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin)| Length = 172 Score = 37.0 bits (84), Expect = 0.047 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 13/68 (19%) Frame = -2 Query: 396 PPRFGRKLSDSQ--KARATHICLDCGYIY----------FLPKP-FEEQPGEYGCPQCNA 256 PPR SD+Q KA IC+ CG+IY F P FE+ P ++ CP C A Sbjct: 107 PPR-----SDAQGGKAYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 161 Query: 255 PKKRFARY 232 K+ + Y Sbjct: 162 TKEDYVLY 169
>RUBR_SYNY3 (P73068) Rubredoxin (Rd)| Length = 115 Score = 34.7 bits (78), Expect = 0.23 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 11/53 (20%) Frame = -2 Query: 366 SQKARATHICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 241 ++ A H C CGY+Y + PFE P + CP C AP+ F Sbjct: 11 AELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYF 63
>RUBR_METTH (O26258) Probable rubredoxin (RD)| Length = 63 Score = 34.7 bits (78), Expect = 0.23 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 11/44 (25%) Frame = -2 Query: 339 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 241 C CGYIY K PFE+ P + CP C A KK F Sbjct: 16 CRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMF 59
>RUBR_PYRFU (P24297) Rubredoxin (Rd)| Length = 53 Score = 34.3 bits (77), Expect = 0.30 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 11/50 (22%) Frame = -2 Query: 351 ATHICLDCGYIY----------FLP-KPFEEQPGEYGCPQCNAPKKRFAR 235 A +C CGYIY P FEE P ++ CP C APK F + Sbjct: 1 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEK 50
>RUBR_PYRAB (Q9V099) Rubredoxin (Rd)| Length = 53 Score = 33.5 bits (75), Expect = 0.52 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 11/46 (23%) Frame = -2 Query: 339 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFAR 235 C CGYIY + FE+ P ++ CP C APK F R Sbjct: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFER 51
>RUBR_ANAVT (Q9XBL8) Rubredoxin (Rd)| Length = 111 Score = 33.5 bits (75), Expect = 0.52 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 25/98 (25%) Frame = -2 Query: 339 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFA-----------RYNV 226 C CGY+Y K PF E P + CP C A K F+ R N+ Sbjct: 16 CRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGTASGFRENL 75 Query: 225 ESGKPIGGALPPLTVIVSLVIGIAGIGALL---VYGLQ 121 G + P I L+ G +G L +YGLQ Sbjct: 76 GYGLGVNKLTPAQKNI--LIFGALALGFLFFISLYGLQ 111
>OST2_RAT (Q80W66) Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC| 2.8.2.29) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2) (Heparan sulfate 3-O-sulfotransferase 2) Length = 367 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/67 (31%), Positives = 35/67 (52%) Frame = +1 Query: 379 PAKPRGRRPLGQALHINITTTPAYYKVYRVWLCLDGCLGESQLVCRPQLITEEAACVEHL 558 P +PR R L A ++++ T Y Y C DG LG+S+L+ P+ + +A + L Sbjct: 11 PPQPRRARRLLFAFTLSLSCT---YLCYSFLCCCDG-LGQSRLLGAPRCLRGPSASGQKL 66 Query: 559 VTRLEPC 579 + + PC Sbjct: 67 LAKSRPC 73
>OST2_MOUSE (Q673U1) Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC| 2.8.2.29) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2) (Heparan sulfate 3-O-sulfotransferase 2) Length = 367 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/67 (31%), Positives = 35/67 (52%) Frame = +1 Query: 379 PAKPRGRRPLGQALHINITTTPAYYKVYRVWLCLDGCLGESQLVCRPQLITEEAACVEHL 558 P +PR R L A ++++ T Y Y C DG LG+S+L+ P+ + +A + L Sbjct: 11 PPQPRRARRLLFAFTLSLSCT---YLCYSFLCCCDG-LGQSRLLGAPRCLRGPSASGQKL 66 Query: 559 VTRLEPC 579 + + PC Sbjct: 67 LAKSRPC 73
>RUBR_ANASP (Q9WWN1) Rubredoxin (Rd)| Length = 111 Score = 33.1 bits (74), Expect = 0.68 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 25/98 (25%) Frame = -2 Query: 339 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFA-----------RYNV 226 C CGY+Y K PF E P + CP C A K F R N+ Sbjct: 16 CRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGTASGFRENL 75 Query: 225 ESGKPIGGALPPLTVIVSLVIGIAGIGALL---VYGLQ 121 G + P I L+ G +G L +YGLQ Sbjct: 76 GYGLGVNKLTPAQKNI--LIFGALALGFLFFISLYGLQ 111
>RDRP_TVCV (Q88920) RNA-directed RNA polymerase (EC 2.7.7.48) (180 kDa protein)| [Contains: Methyltransferase/RNA helicase (MT/HEL) (125 kDa protein)] Length = 1601 Score = 32.7 bits (73), Expect = 0.88 Identities = 27/107 (25%), Positives = 44/107 (41%) Frame = -2 Query: 417 RLPKRPAPPRFGRKLSDSQKARATHICLDCGYIYFLPKPFEEQPGEYGCPQCNAPKKRFA 238 R+ P P F + ++D ++ R + YFL K ++ G C + +R Sbjct: 933 RVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYD------GAVMCTSAVERSV 986 Query: 237 RYNVESGKPIGGALPPLTVIVSLVIGIAGIGALLVYGLQ*AFSSLEK 97 + V GK GAL P+T+ + G +L + F LEK Sbjct: 987 KAEVVRGK---GALNPITLPLE--------GKILTFTQADKFELLEK 1022
>PDZK1_RAT (Q9JJ40) PDZ domain-containing protein 1 (Na/Pi cotransporter| C-terminal-associated protein) (NaPi-Cap1) (Na(+)/H(+) exchanger regulatory factor 3) (Sodium-hydrogen exchanger regulatory factor 3) (Dietary Pi-regulated RNA-1) (Diphor-1) (C-termi Length = 523 Score = 32.3 bits (72), Expect = 1.2 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 6/86 (6%) Frame = -2 Query: 606 VESGGNAARAGLKSGDQVLYTSSFFGDELWPAD------KLGFTKTAIQAKPDSVYFVVS 445 +E G A +AGL GD+VL + F D+ A K G + T + DS V Sbjct: 38 IEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVDLVRKSGNSVTLLVLDGDSYEKAVK 97 Query: 444 RGGGDIDVKRLPKRPAPPRFGRKLSD 367 +D+K L + P P K D Sbjct: 98 H---QVDLKELDQSPREPALNEKKPD 120
>LRP12_HUMAN (Q9Y561) Low-density lipoprotein receptor-related protein 12| precursor (Suppressor of tumorigenicity protein 7) Length = 859 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%) Frame = +2 Query: 326 PQSRQMCVALAFCESDNFRPNRGGAGLLGRRFTSISPPPLLTTKY--------TESGFAW 481 P + + + C S + + RGG GR TS+ PP + ++ G W Sbjct: 680 PPTTAVEATVGACASSSTQSTRGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRW 739 Query: 482 MAVLVNPSLSAGHNSSPKKLL 544 + + S S N SP + L Sbjct: 740 VRFTLGRSSSLSQNQSPLRQL 760
>RUBR_DESVM (P15412) Rubredoxin (Rd)| Length = 52 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 11/46 (23%) Frame = -2 Query: 345 HICLDCGYIYFLP--------KP---FEEQPGEYGCPQCNAPKKRF 241 ++C CGY Y KP FE+ P ++ CP C APK F Sbjct: 4 YVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEF 49
>RUBR2_DESDE (Q93PP8) Rubredoxin 2 (Rd-2)| Length = 61 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 11/50 (22%) Frame = -2 Query: 336 LDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFARYNVES 220 ++CGY+Y + FE+ P ++ CP C A KK F R + E+ Sbjct: 12 VNCGYVYDPDRGDKRRKVPAGTKFEDLPEDWRCPVCGAGKKSFRRLSDEA 61
>LRP12_MACFA (Q9BE74) Low-density lipoprotein receptor-related protein 12| (Fragment) Length = 701 Score = 31.6 bits (70), Expect = 2.0 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%) Frame = +2 Query: 326 PQSRQMCVALAFCESDNFRPNRGGAGLLGRRFTSISPPPLLTTKY--------TESGFAW 481 P + + + C S + + RGG GR TS+ PP + ++ G W Sbjct: 522 PPTTAVEATVGACASSSTQSARGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRW 581 Query: 482 MAVLVNPSLSAGHNSSPKKLL 544 + + S S N SP + L Sbjct: 582 VRFTLGRSSSVSQNQSPLRQL 602
>DP2L_PYRHO (O57861) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| [Contains: Pho polC intein (Pho pol II intein)] Length = 1431 Score = 31.6 bits (70), Expect = 2.0 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 18/142 (12%) Frame = -2 Query: 519 WPADKLGFTKTAIQAK---PDSVYFVVSRGGGDI-DVKRLPKRPAPPRFGRKLSDSQKAR 352 W ++G + A + K P V F + GG D+K+ + L K Sbjct: 648 WIGARMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIALFKCPKCG 707 Query: 351 AT---HICLDCG----YIYFLPKPFEEQPGE------YGCPQCNAPKKRFARYNVESGKP 211 HIC +CG I+ P+ E P Y CP+CN K +A+ ++ + Sbjct: 708 HVGPEHICPNCGTRKELIWVCPRCNAEYPESQASGYNYTCPKCNVKLKPYAKRKIKPSEL 767 Query: 210 IGGALPPLTVI-VSLVIGIAGI 148 + A+ + V + + G+ G+ Sbjct: 768 LKRAMDNVKVYGIDKLKGVMGM 789
>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1473 Score = 31.2 bits (69), Expect = 2.6 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -2 Query: 447 SRGGGDIDVKR-LPKRPAPPRFGRKLSDSQKARATHICLD 331 ++ G + VKR PK+PAP + +K S+S+ A++ +D Sbjct: 1193 AKSGAAVKVKRQAPKKPAPKKTTKKASESETTEASYSAMD 1232
>SPRL_OCEIH (Q8ESK0) Protein sprT-like| Length = 150 Score = 31.2 bits (69), Expect = 2.6 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = -2 Query: 435 GDIDVKRLPKRPAPPRFGRKLSDSQKA-RATHICLDCGYIYFLPKPFEEQPGEYGCPQCN 259 GD D K L K PR L Q+ R + C+ CG++Y + + +Y C +C Sbjct: 87 GDRDFKELLKATGSPRHCSPLPSQQREYRYKYQCIQCGFVYKRVRKVNMR--KYRCGKCR 144 Query: 258 APKK 247 K Sbjct: 145 GSLK 148
>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)| (Restrictedly overexpressed proliferation-associated protein) (Ropp 120) Length = 981 Score = 31.2 bits (69), Expect = 2.6 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 308 PSPLKNSLVSTAVPSAMHQRSDSQDTT*SLGSPLAE 201 P+ L+NSL T PS H +S++ + LG PL E Sbjct: 920 PTLLENSLEQTVEPSEDHSEEESEEGSGDLGEPLYE 955
>RUBR_DESVH (P00269) Rubredoxin (Rd)| Length = 52 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 11/46 (23%) Frame = -2 Query: 345 HICLDCGYIYFLP--------KP---FEEQPGEYGCPQCNAPKKRF 241 ++C CGY Y KP F++ P ++ CP C APK F Sbjct: 4 YVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEF 49
>RUBR1_DESDE (P04170) Rubredoxin 1 (Rd-1)| Length = 45 Score = 31.2 bits (69), Expect = 2.6 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Frame = -2 Query: 345 HICLDCGYIYFLPK----PFEEQPGEYGCPQCNAPKKRFA 238 ++C CGY Y + PF++ P ++ CP C K +F+ Sbjct: 4 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFS 43
>RUBL_BRAJA (P48344) Probable rubredoxin hupI| Length = 69 Score = 31.2 bits (69), Expect = 2.6 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 303 PFEEQPGEYGCPQCNAPKKRF 241 PF P E+ CP C+APK +F Sbjct: 44 PFAALPEEWHCPNCDAPKSKF 64
>WHRN_RAT (Q810W9) Whirlin (CASK-interacting protein CIP98)| Length = 920 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 621 VVITGVESGGNAARAGLKSGDQVL 550 + ITGV+ G A +GLK GDQ+L Sbjct: 303 IYITGVDPGSEAESSGLKVGDQIL 326
>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516| Length = 1157 Score = 30.8 bits (68), Expect = 3.4 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Frame = -2 Query: 414 LPKRPAPPRFGRKLSDSQKARATHICLDCGYIY----FLPKPFEEQPGE--YGCPQCN 259 L + P+PPR GR A H C CG + L + + GE Y CP C+ Sbjct: 11 LRRGPSPPRAGRSHEVDGDKAACHSCCICGKSFPFQSSLSQHMRKHTGEKPYKCPYCD 68
>WHRN_MOUSE (Q80VW5) Whirlin| Length = 906 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 621 VVITGVESGGNAARAGLKSGDQVL 550 + ITGV+ G A +GLK GDQ+L Sbjct: 305 IYITGVDPGSEAESSGLKVGDQIL 328
>HTRA_LACHE (Q9Z4H7) Serine protease do-like htrA (EC 3.4.21.-)| Length = 413 Score = 30.8 bits (68), Expect = 3.4 Identities = 19/68 (27%), Positives = 33/68 (48%) Frame = -2 Query: 621 VVITGVESGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSR 442 + I V G+AA AG+KSGD + +++ + ++ D+V V+R Sbjct: 344 IYIAFVSRNGSAANAGIKSGDVITKVDGKKVEDVASLHSILYSHKV----GDTVNVTVNR 399 Query: 441 GGGDIDVK 418 G D+D+K Sbjct: 400 NGKDVDMK 407
>RUBR_HELMO (P56263) Rubredoxin (Rd)| Length = 52 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 11/44 (25%) Frame = -2 Query: 339 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 241 CL CGY+Y K FE+ P ++ CP C K F Sbjct: 6 CLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEF 49
>RUBR_DESGI (P00270) Rubredoxin (Rd)| Length = 52 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 11/48 (22%) Frame = -2 Query: 345 HICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFAR 235 ++C CGY Y K FE+ P ++ CP C A K F + Sbjct: 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEK 51
>DEGP_SALTY (P26982) Protease do precursor (EC 3.4.21.-)| Length = 475 Score = 30.4 bits (67), Expect = 4.4 Identities = 17/65 (26%), Positives = 30/65 (46%) Frame = -2 Query: 621 VVITGVESGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSR 442 VV++ V++ AA+ GLK GD ++ G P + + + +KP + + R Sbjct: 412 VVVSSVKANSPAAQIGLKKGDVII------GANQQPVKNIAELRKILDSKPSVLALNIQR 465 Query: 441 GGGDI 427 G I Sbjct: 466 GDSSI 470
>WHRN_HUMAN (Q9P202) Whirlin (Autosomal recessive deafness type 31 protein)| Length = 907 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 621 VVITGVESGGNAARAGLKSGDQVL 550 + ITGV+ G A +GLK GDQ+L Sbjct: 304 IYITGVDPGSEAEGSGLKVGDQIL 327
>RPGF6_HUMAN (Q8TEU7) Rap guanine nucleotide exchange factor 6 (PDZ| domain-containing guanine nucleotide exchange factor 2) (PDZ-GEF2) (RA-GEF-2) Length = 1601 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 Query: 621 VVITGVESGGNAARAGLKSGDQVL 550 + + GVE G AA +GLK GDQ++ Sbjct: 556 IFVEGVEPGSEAADSGLKRGDQIM 579
>RPGF2_HUMAN (Q9Y4G8) Rap guanine nucleotide exchange factor 2 (Neural RAP| guanine nucleotide exchange protein) (nRap GEP) (PDZ domain-containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF) Length = 1499 Score = 30.0 bits (66), Expect = 5.7 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 621 VVITGVESGGNAARAGLKSGDQVL 550 + + V+SG A AGLK GDQ+L Sbjct: 411 IFVDSVDSGSKATEAGLKRGDQIL 434
>RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RAG-1) (RING| finger protein 74) Length = 1043 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = -2 Query: 492 KTAIQAKP--DSVYFVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARA--------TH 343 K + + KP + V+ + G V P A P+F +K D++KAR H Sbjct: 50 KDSFEGKPSLEQSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRH 109 Query: 342 ICLDCG 325 +C CG Sbjct: 110 LCRICG 115
>COG3_YEAST (P40094) Conserved oligomeric Golgi complex component 3 (SEC34| protein) Length = 801 Score = 30.0 bits (66), Expect = 5.7 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 362 RRLEQHTSALIVDTYTFYPSPLKNSLVSTAVPSAMH 255 R++ Q T A I +T T Y K S ++ ++P A+H Sbjct: 119 RKISQDTGAFIEETKTIYEKQSKLSNLTESIPKALH 154
>OST2_HUMAN (Q9Y278) Heparan sulfate glucosamine 3-O-sulfotransferase 2 (EC| 2.8.2.29) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2) (Heparan sulfate 3-O-sulfotransferase 2) (h3-OST-2) Length = 367 Score = 29.6 bits (65), Expect = 7.5 Identities = 23/74 (31%), Positives = 36/74 (48%) Frame = +1 Query: 379 PAKPRGRRPLGQALHINITTTPAYYKVYRVWLCLDGCLGESQLVCRPQLITEEAACVEHL 558 P +PR R L A ++++ T Y Y C D LG S+L+ P+ + +A + L Sbjct: 11 PPQPRRARRLLFAFTLSLSCT---YLCYSFLCCCDD-LGRSRLLGAPRCLRGPSAGGQKL 66 Query: 559 VTRLEPCSCCIPSG 600 + + PC PSG Sbjct: 67 LQKSRPCD---PSG 77
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 29.6 bits (65), Expect = 7.5 Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 25/161 (15%) Frame = +2 Query: 128 PYTSKAPMPAMPITKLTITVRGGSAPPMGF--PDSTLYLANRFFGALHWGQPYSPG---- 289 P AP+PA P+ G S P + P S LYL GA G P+S G Sbjct: 2152 PQQLSAPLPA-PLYSFP----GASCPVLDLRRPPSDLYLPPPDHGAPARGSPHSEGGKRS 2206 Query: 290 -----CSSKGLGRKYMYP-----------QSRQMCVALAFCESDNFRPNRGGAGLLGRRF 421 S G G + P SR L + + + P+R G+ G Sbjct: 2207 PEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSRSAVYPLLYRDGEQTEPSRMGSKSPG--- 2263 Query: 422 TSISPPPLLTTKYTESGFAWMAVL---VNPSLSAGHNSSPK 535 + S PP +K TES A + +N L+ + + P+ Sbjct: 2264 -NTSQPPAFFSKLTESNSAMVKSKKQEINKKLNTHNRNEPE 2303
>HRB_MOOTA (Q9FDN6) High molecular weight rubredoxin (Nitric oxide reductase| NADH:FprA oxidoreductase) Length = 229 Score = 29.6 bits (65), Expect = 7.5 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%) Frame = -2 Query: 423 VKRLPKRPAPPRF--GRKLSDSQKARATHICLDCGYIY----------FLP-KPFEEQPG 283 VKR P F GR+ + A + C C Y+Y P PF + P Sbjct: 153 VKRGTTPKTAPTFTVGREKDKTALASPKYQCTICNYVYDPVQGDPEHGIAPGTPFADLPE 212 Query: 282 EYGCPQCNAPKKRF 241 ++ CP C A K F Sbjct: 213 DWTCPICGAGKDAF 226
>RUBR_CLOAB (Q9AL94) Rubredoxin (Rd)| Length = 54 Score = 29.6 bits (65), Expect = 7.5 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%) Frame = -2 Query: 345 HICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 241 ++C+ CGYIY + FE+ P ++ CP C K +F Sbjct: 4 YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQF 49
>HUPJ_RHOCA (Q03009) Probable rubredoxin hupJ| Length = 278 Score = 29.3 bits (64), Expect = 9.8 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 303 PFEEQPGEYGCPQCNAPKKRF 241 PF P ++ CP C+APK +F Sbjct: 51 PFTALPEDWHCPNCDAPKAQF 71
>FABZ_PSEPK (Q88MG9) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase| (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase) Length = 146 Score = 29.3 bits (64), Expect = 9.8 Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Frame = +2 Query: 14 LPHXY*NFLLDRVHEKSVELVDAWPEQNFSRDEKAY*RPYTSKAPMPAMPITKLTITVRG 193 LPH Y L+DRV + E +N S +E + + + MP + L I Sbjct: 11 LPHRYPFLLVDRVTDLDFEAQSIRAYKNVSINEPFFNGHFPAHPIMPGV----LIIEAMA 66 Query: 194 GSAPPMGF-------PDSTLYLANRFFGA--LHWGQPYSPG----CSSKGLGRKYM 322 +A +GF D TLY F G+ L + QP PG +K L RK M Sbjct: 67 QAAGILGFKMLDAKPADGTLYY---FVGSDKLRFRQPVLPGDQLVLEAKFLSRKSM 119
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 29.3 bits (64), Expect = 9.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 481 PSKARLCILCSKQGWW*Y*CEAPAQE 404 P K R C LCS++G Y C AP E Sbjct: 258 PRKVRRCFLCSRRGHLLYSCPAPLCE 283
>IQGA1_MOUSE (Q9JKF1) Ras GTPase-activating-like protein IQGAP1| Length = 1657 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = +1 Query: 412 QALHINITTTPAYYKVYRVWLCLDGCLGESQLVCRPQLITEEAACVEHLVTRLEPCSCCI 591 + + +I+ A Y ++WL +G + + Q CR L+ +E + + + P CI Sbjct: 723 EEIQSSISGVTAAYNREQLWLANEGLITKLQACCRGYLVRQEFRSRMNFLKKQIPAITCI 782 Query: 592 PS 597 S Sbjct: 783 QS 784
>CDCP1_MOUSE (Q5U462) CUB domain-containing protein 1 precursor (Transmembrane| and associated with src kinases) (Membrane glycoprotein gp140) (CD318 antigen) Length = 833 Score = 29.3 bits (64), Expect = 9.8 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 13/57 (22%) Frame = -2 Query: 255 PKKRFARY----NVESGKPIGG---------ALPPLTVIVSLVIGIAGIGALLVYGL 124 PK F + N+ + P+ G L P TV +++VIG AG GALL++ L Sbjct: 627 PKPSFHHHSFWVNISNCSPMNGKQLDLLFWVTLTPRTVDLAVVIGAAGGGALLLFAL 683
>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)| Length = 547 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = -2 Query: 486 AIQAKPDSVY---FVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICL 334 A+ A PD+ F+ S GG D+DV+ + R AP GR++ + T + L Sbjct: 449 AVWADPDAFAPERFLPSEGGADVDVRGVDLRLAPFGAGRRVCPGKNLGLTTVGL 502
>KV5L_MOUSE (P01645) Ig kappa chain V-V region HP 93G7| Length = 108 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/62 (29%), Positives = 22/62 (35%) Frame = +2 Query: 218 PDSTLYLANRFFGALHWGQPYSPGCSSKGLGRKYMYPQSRQMCVALAFCESDNFRPNRGG 397 PD T+ L + LH G P S G Q +A FC+ N P G Sbjct: 40 PDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNMLPRTFG 99 Query: 398 AG 403 G Sbjct: 100 GG 101
>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 373 Score = 29.3 bits (64), Expect = 9.8 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Frame = -2 Query: 486 AIQAKPDSVY--FVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICLDCGYIYF 313 A+ KPD + + + G V+ + +R P + AR T LD G + F Sbjct: 44 ALALKPDVITMDYEMPMMDGITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDF 103 Query: 312 LPKPFE------EQPGEYGCPQCNA---PKKRFARYNVESGKPIGGALP 193 LPK FE E+ + C + ++ +RF+ Y+ + +P P Sbjct: 104 LPKNFEDISRNPEKVKQLLCEKVHSISRSNRRFSSYSAPAPQPASAPAP 152 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,109,696 Number of Sequences: 219361 Number of extensions: 2450927 Number of successful extensions: 7680 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 7308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7667 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
