ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence 254 3e-64
2gb|AY105451.1| Zea mays PCO122767 mRNA sequence 254 3e-64
3dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 5e-54
4dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 5e-54
5dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 5e-54
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
7dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
8gb|AY279311.1| Malus x domestica ATP-dependent Clp protease prot... 54 6e-04
9gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, co... 46 0.15
10gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Canc... 46 0.15
11gb|AY665221.1| Saimiri boliviensis reticulon 1 mRNA, partial cds 42 2.4
12ref|NM_101113.2| Arabidopsis thaliana CLPR2; endopeptidase Clp A... 42 2.4
13emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chr... 42 2.4
14tpg|BK001692.1| TPA: TPA_inf: Ateles belzebuth chamek RTN1-Aw (R... 42 2.4
15gb|AY081641.1| Arabidopsis thaliana similar to nClpP2 dbj|BAA820... 42 2.4
16gb|AY062770.1| Arabidopsis thaliana similar to nClpP2 (At1g12410... 42 2.4
17gb|AY057617.1| Arabidopsis thaliana At1g12410/F5O11_7 mRNA, comp... 42 2.4
18emb|BX813571.1|CNS0AAJF Arabidopsis thaliana Full-length cDNA Co... 42 2.4
19emb|BX841886.1|CNS09Y1Z Arabidopsis thaliana Full-length cDNA Co... 42 2.4
20emb|BX842500.1|CNS0ABM0 Arabidopsis thaliana Full-length cDNA Co... 42 2.4
21gb|AF029167.1|AF029167 Ateles paniscus chamek neuroendocrine-spe... 42 2.4
22dbj|AB022327.1| Arabidopsis thaliana mRNA for nClpP2 (nuclear en... 42 2.4
23ref|XM_479327.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.5
24gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromo... 40 9.5
25gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromo... 40 9.5
26gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome... 40 9.5
27gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, compl... 40 9.5
28emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chro... 40 9.5
29gb|AC091535.2| Takifugu rubripes clone 241F4, complete sequence 40 9.5
30emb|AL132795.12|HSDJ412I7 Human DNA sequence from clone RP3-412I... 40 9.5
31emb|BX571862.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 9.5
32gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 9.5
33gb|AC098481.2| Homo sapiens chromosome 3 clone RP11-349E16, comp... 40 9.5
34gb|AC114876.2| Homo sapiens chromosome 3 clone RP11-728B21, comp... 40 9.5
35gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromo... 40 9.5
36dbj|AK084541.1| Mus musculus 13 days embryo heart cDNA, RIKEN fu... 40 9.5
37dbj|AK041583.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 9.5
38dbj|AK053054.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 9.5
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
40dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 9.5
41ref|NM_175132.2| Mus musculus synaptopodin 2-like (Synpo2l), mRNA 40 9.5
42dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
43emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.5
44emb|AL591495.12| Mouse DNA sequence from clone RP23-61O3 on chro... 40 9.5
45gb|AC100244.12| Mus musculus chromosome 8, clone RP23-64K12, com... 40 9.5
46gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, com... 40 9.5 
>gb|BT017217.1| Zea mays clone EL01N0372E04.c mRNA sequence
          Length = 1252

 Score =  254 bits (128), Expect = 3e-64
 Identities = 233/268 (86%)
 Strand = Plus / Minus

                                                                       
Query: 430 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 489
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 880 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 821

                                                                       
Query: 490 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 549
            |||||||||||||||||||||  ||| |||| |||||| || | |||||| ||||||||
Sbjct: 820 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 761

                                                                       
Query: 550 acccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttga 609
            || |||||| | || ||||||||||| |||||||||||||| ||  |||| ||||||| 
Sbjct: 760 gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttgc 701

                                                                       
Query: 610 ttcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaac 669
           ||||||||||||||| |||||||| ||||||||||| || |||||||| || ||||||| 
Sbjct: 700 ttcgttttctatatcgtcagcctgtcctcgagctgctccggcaggtgattggagtgaaat 641

                                       
Query: 670 acggcaaagaggcataccagtacgtgaa 697
            ||||| |||||||||||||| ||||||
Sbjct: 640 ccggcatagaggcataccagtgcgtgaa 613
to top
>gb|AY105451.1| Zea mays PCO122767 mRNA sequence
          Length = 709

 Score =  254 bits (128), Expect = 3e-64
 Identities = 233/268 (86%)
 Strand = Plus / Minus

                                                                       
Query: 430 gccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggc 489
           ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || ||
Sbjct: 493 gccctctttcttgatcctagacggcctgacaatacggtcgatgatcccgtactcgagagc 434

                                                                       
Query: 490 tccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatg 549
            |||||||||||||||||||||  ||| |||| |||||| || | |||||| ||||||||
Sbjct: 433 cccttcggcgtcgaagcgcttcaccctagacaggtcctcatggatcttctcgacagaatg 374

                                                                       
Query: 550 acccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttga 609
            || |||||| | || ||||||||||| |||||||||||||| ||  |||| ||||||| 
Sbjct: 373 gcctgtgtgccccgcgagcttgccatagagatagttcttgatgcggataagctcgtttgc 314

                                                                       
Query: 610 ttcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaac 669
           ||||||||||||||| |||||||| ||||||||||| || |||||||| || ||||||| 
Sbjct: 313 ttcgttttctatatcgtcagcctgtcctcgagctgctccggcaggtgattggagtgaaat 254

                                       
Query: 670 acggcaaagaggcataccagtacgtgaa 697
            ||||| |||||||||||||| ||||||
Sbjct: 253 ccggcatagaggcataccagtgcgtgaa 226
to top
>dbj|AK104375.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G04, full
           insert sequence
          Length = 1133

 Score =  220 bits (111), Expect = 5e-54
 Identities = 228/267 (85%)
 Strand = Plus / Minus

                                                                       
Query: 431 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 490
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                                                                       
Query: 491 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 550
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757

                                                                       
Query: 551 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 610
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 756 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 697

                                                                       
Query: 611 tcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaaca 670
           || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  
Sbjct: 696 tcattttctatatcatcagcctgccctcgagctgctccagcaggtgactgaagtgaaatc 637

                                      
Query: 671 cggcaaagaggcataccagtacgtgaa 697
           ||||||||||||||||| |||||||||
Sbjct: 636 cggcaaagaggcatacccgtacgtgaa 610



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 373 catctactagccgagtcccagattccgcagttccttctt 411
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
to top
>dbj|AK099815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L17, full
           insert sequence
          Length = 1243

 Score =  220 bits (111), Expect = 5e-54
 Identities = 228/267 (85%)
 Strand = Plus / Minus

                                                                       
Query: 431 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 490
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 894 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 835

                                                                       
Query: 491 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 550
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 834 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 775

                                                                       
Query: 551 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 610
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 774 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 715

                                                                       
Query: 611 tcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaaca 670
           || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  
Sbjct: 714 tcattttctatatcatcagcctgccctcgagctgctccagcaggtgactgaagtgaaatc 655

                                      
Query: 671 cggcaaagaggcataccagtacgtgaa 697
           ||||||||||||||||| |||||||||
Sbjct: 654 cggcaaagaggcatacccgtacgtgaa 628



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 373 catctactagccgagtcccagattccgcagttccttctt 411
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 946 catctactagccaagtcccagattacgtagatccttctt 908
to top
>dbj|AK061385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A01, full
           insert sequence
          Length = 1133

 Score =  220 bits (111), Expect = 5e-54
 Identities = 228/267 (85%)
 Strand = Plus / Minus

                                                                       
Query: 431 ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 490
           |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 876 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 817

                                                                       
Query: 491 ccttcggcgtcgaagcgcttcgacctggacaagtcctcgtgaaccttctcaacagaatga 550
           ||||| || ||||||||||||  ||| || |  || || |||| ||| ||||||| ||||
Sbjct: 816 ccttcagcatcgaagcgcttcaccctagatagatcttcatgaatcttatcaacaggatga 757

                                                                       
Query: 551 cccgtgtgctctgctagcttgccataaagatagttcttgatccgattaagttcgtttgat 610
           || ||||||||||  | |||||  ||||||||||||||||||| | ||||||| |||| |
Sbjct: 756 cctgtgtgctctgacaacttgctgtaaagatagttcttgatcctaataagttcatttgct 697

                                                                       
Query: 611 tcgttttctatatcatcagcctggcctcgagctgccccagcaggtgactgaagtgaaaca 670
           || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  
Sbjct: 696 tcattttctatatcatcagcctgccctcgagctgctccagcaggtgactgaagtgaaatc 637

                                      
Query: 671 cggcaaagaggcataccagtacgtgaa 697
           ||||||||||||||||| |||||||||
Sbjct: 636 cggcaaagaggcatacccgtacgtgaa 610



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 373 catctactagccgagtcccagattccgcagttccttctt 411
           |||||||||||| ||||||||||| || || ||||||||
Sbjct: 928 catctactagccaagtcccagattacgtagatccttctt 890
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                           
Query: 533     accttctcaacagaatgacccgtgtgctctgctagcttgccataaagatagttcttgatc 592
               ||||| ||||||| |||||| ||||||||||  | |||||  ||||||||||||||||||
Sbjct: 1951551 accttatcaacaggatgacctgtgtgctctgacaacttgctgtaaagatagttcttgatc 1951492

                                                        
Query: 593     cgattaagttcgtttgattcgttttctatatcatcagcctg 633
               | | ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 1951491 ctaataagttcatttgcttcattttctatatcatcagcctg 1951451



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                           
Query: 630     cctggcctcgagctgccccagcaggtgactgaagtgaaacacggcaaagaggcataccag 689
               |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||| |
Sbjct: 1951351 cctgccctcgagctgctccagcaggtgactgaagtgaaatccggcaaagaggcatacccg 1951292

                       
Query: 690     tacgtgaa 697
               ||||||||
Sbjct: 1951291 tacgtgaa 1951284



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 431     ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 490
               |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 1951928 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 1951869

                                    
Query: 491     ccttcggcgtcgaagcgcttc 511
               ||||| || ||||||||||||
Sbjct: 1951868 ccttcagcatcgaagcgcttc 1951848



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 373     catctactagccgagtcccagattccgcagttccttctt 411
               |||||||||||| ||||||||||| || || ||||||||
Sbjct: 1951980 catctactagccaagtcccagattacgtagatccttctt 1951942
to top
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548D03
          Length = 156709

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                         
Query: 533   accttctcaacagaatgacccgtgtgctctgctagcttgccataaagatagttcttgatc 592
             ||||| ||||||| |||||| ||||||||||  | |||||  ||||||||||||||||||
Sbjct: 80331 accttatcaacaggatgacctgtgtgctctgacaacttgctgtaaagatagttcttgatc 80272

                                                      
Query: 593   cgattaagttcgtttgattcgttttctatatcatcagcctg 633
             | | ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 80271 ctaataagttcatttgcttcattttctatatcatcagcctg 80231



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                         
Query: 630   cctggcctcgagctgccccagcaggtgactgaagtgaaacacggcaaagaggcataccag 689
             |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||| |
Sbjct: 80131 cctgccctcgagctgctccagcaggtgactgaagtgaaatccggcaaagaggcatacccg 80072

                     
Query: 690   tacgtgaa 697
             ||||||||
Sbjct: 80071 tacgtgaa 80064



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                         
Query: 431   ccctctttcttgatccgagaaggcctgacgatacggtcgatgatcccgtactccagggct 490
             |||||||||||||| ||||||||||| |  |||||||| || ||||| || ||||  |||
Sbjct: 80708 ccctctttcttgatgcgagaaggcctaataatacggtcaataatcccatattccaaagct 80649

                                  
Query: 491   ccttcggcgtcgaagcgcttc 511
             ||||| || ||||||||||||
Sbjct: 80648 ccttcagcatcgaagcgcttc 80628



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 373   catctactagccgagtcccagattccgcagttccttctt 411
             |||||||||||| ||||||||||| || || ||||||||
Sbjct: 80760 catctactagccaagtcccagattacgtagatccttctt 80722
to top
>gb|AY279311.1| Malus x domestica ATP-dependent Clp protease proteolytic subunit
           mRNA, partial cds
          Length = 364

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 598 aagttcgtttgattcgttttctatatcatcagcctggcctcgagctgccccagcaggtga 657
           |||||| |||| ||| |||| ||||||||||||||| || ||||| ||||| ||||| ||
Sbjct: 162 aagttcatttgcttcattttgtatatcatcagcctgaccacgagcagccccggcaggaga 103

              
Query: 658 ctg 660
           |||
Sbjct: 102 ctg 100
to top
>gb|AC139211.13| Mus musculus chromosome 6, clone RP23-302O24, complete sequence
          Length = 154129

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 613    gttttctatatcatcagcctggc 635
              |||||||||||||||||||||||
Sbjct: 148686 gttttctatatcatcagcctggc 148708
to top
>gb|AC158683.2| Mus musculus 6 BAC RP23-328P16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203488

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 613    gttttctatatcatcagcctggc 635
              |||||||||||||||||||||||
Sbjct: 143790 gttttctatatcatcagcctggc 143768
to top
>gb|AY665221.1| Saimiri boliviensis reticulon 1 mRNA, partial cds
          Length = 263

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 627 cagcctggcctcgagctgccc 647
           |||||||||||||||||||||
Sbjct: 242 cagcctggcctcgagctgccc 262
to top
>ref|NM_101113.2| Arabidopsis thaliana CLPR2; endopeptidase Clp AT1G12410 (CLPR2)
           mRNA, complete cds
          Length = 1062

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 679 atatcatcagcctgaccacgggctgcaccagctggtgactg 639
to top
>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part
             of a novel gene (FLJ20276), complete sequence
          Length = 64981

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 257   caacagattaaatgacatacatcca 281
             |||||||||||||||||| ||||||
Sbjct: 28635 caacagattaaatgacatccatcca 28659
to top
>tpg|BK001692.1| TPA: TPA_inf: Ateles belzebuth chamek RTN1-Aw (RTN1) mRNA, partial
           cds; alternatively spliced
          Length = 263

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 627 cagcctggcctcgagctgccc 647
           |||||||||||||||||||||
Sbjct: 242 cagcctggcctcgagctgccc 262
to top
>gb|AY081641.1| Arabidopsis thaliana similar to nClpP2 dbj|BAA82066.1 (At1g12410)
           mRNA, complete cds
          Length = 871

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 617 atatcatcagcctgaccacgggctgcaccagctggtgactg 577
to top
>gb|AY062770.1| Arabidopsis thaliana similar to nClpP2 (At1g12410; F5O11.13) mRNA,
           complete cds
          Length = 968

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 664 atatcatcagcctgaccacgggctgcaccagctggtgactg 624
to top
>gb|AY057617.1| Arabidopsis thaliana At1g12410/F5O11_7 mRNA, complete cds
          Length = 994

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 675 atatcatcagcctgaccacgggctgcaccagctggtgactg 635
to top
>emb|BX813571.1|CNS0AAJF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB24ZH11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 964

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 617 atatcatcagcctgaccacgggctgcaccagctggtgactg 577
to top
>emb|BX841886.1|CNS09Y1Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL12ZA05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1001

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 654 atatcatcagcctgaccacgggctgcaccagctggtgactg 614
to top
>emb|BX842500.1|CNS0ABM0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH3ZD08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 708

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 401 atatcatcagcctgaccacgggctgcaccagctggtgactg 361
to top
>gb|AF029167.1|AF029167 Ateles paniscus chamek neuroendocrine-specific protein (NSP) gene,
           partial cds
          Length = 263

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 627 cagcctggcctcgagctgccc 647
           |||||||||||||||||||||
Sbjct: 242 cagcctggcctcgagctgccc 262
to top
>dbj|AB022327.1| Arabidopsis thaliana mRNA for nClpP2 (nuclear encoded ClpP2),
           complete cds
          Length = 999

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 620 atatcatcagcctggcctcgagctgccccagcaggtgactg 660
           |||||||||||||| || || ||||| ||||| ||||||||
Sbjct: 655 atatcatcagcctgaccacgggctgcaccagctggtgactg 615
to top
>ref|XM_479327.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 121 aagaacaataatccgtccatggag 144
           ||||||||||||| ||||||||||
Sbjct: 151 aagaacaataatcagtccatggag 174
to top
>gb|AC161286.2| Pan troglodytes BAC clone CH251-332L6 from chromosome 7, complete
              sequence
          Length = 172473

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    gtacatatgaaagaacagag 190
              ||||||||||||||||||||
Sbjct: 153229 gtacatatgaaagaacagag 153248
to top
>gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromosome 7, complete
             sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   gtacatatgaaagaacagag 190
             ||||||||||||||||||||
Sbjct: 16612 gtacatatgaaagaacagag 16631
to top
>gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome 7, complete sequence
          Length = 178643

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 171   gtacatatgaaagaacagagaaga 194
             ||||| ||||||||||||||||||
Sbjct: 66718 gtacaaatgaaagaacagagaaga 66695
to top
>gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, complete sequence
          Length = 218747

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ctgcaccccagcccactgca 41
             ||||||||||||||||||||
Sbjct: 31139 ctgcaccccagcccactgca 31120
to top
>emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chromosome 11p11.2-12
             Contains the start of the CD44 (CD44 antigen (homing
             function andnIndian blood group system)) gene, ESTs, STSs,
             GSSs and a CpG island, complete sequence
          Length = 150533

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 627   cagcctggcctcgagctgccccag 650
             |||||||||||| |||||||||||
Sbjct: 65325 cagcctggcctcaagctgccccag 65302
to top
>gb|AC091535.2| Takifugu rubripes clone 241F4, complete sequence
          Length = 71409

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 647   ccagcaggtgactgaagtga 666
             ||||||||||||||||||||
Sbjct: 66350 ccagcaggtgactgaagtga 66331
to top
>emb|AL132795.12|HSDJ412I7 Human DNA sequence from clone RP3-412I7 on chromosome 6q22.1-22.33
             Contains a gene similar to murine radial spokehead-like 1,
             a novel gene, the KPNA5 gene for karyopherin alpha 5
             (importin alpha 6) and a CpG island, complete sequence
          Length = 135417

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    accccagcccactgcaacct 45
             ||||||||||||||||||||
Sbjct: 31858 accccagcccactgcaacct 31839
to top
>emb|BX571862.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              4/17
          Length = 349519

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     ctggatcacaaactggccca 118
              ||||||||||||||||||||
Sbjct: 333331 ctggatcacaaactggccca 333312
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 467     tcgatgatcccgtactccagggct 490
               |||| |||||||||||||||||||
Sbjct: 2015193 tcgaggatcccgtactccagggct 2015170
to top
>gb|AC098481.2| Homo sapiens chromosome 3 clone RP11-349E16, complete sequence
          Length = 227137

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cccagcccactgcaaccttc 47
             ||||||||||||||||||||
Sbjct: 41370 cccagcccactgcaaccttc 41389
to top
>gb|AC114876.2| Homo sapiens chromosome 3 clone RP11-728B21, complete sequence
          Length = 171697

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    cccagcccactgcaaccttc 47
             ||||||||||||||||||||
Sbjct: 82421 cccagcccactgcaaccttc 82402
to top
>gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromosome 7, complete
             sequence
          Length = 193048

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   gtacatatgaaagaacagag 190
             ||||||||||||||||||||
Sbjct: 83471 gtacatatgaaagaacagag 83490
to top
>dbj|AK084541.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
            library, clone:D330013K06 product:CDNA FLJ12921 FIS,
            CLONE NT2RP2004600 homolog [Homo sapiens], full insert
            sequence
          Length = 3679

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ctgcaccccagcccactgca 41
            ||||||||||||||||||||
Sbjct: 2073 ctgcaccccagcccactgca 2092
to top
>dbj|AK041583.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630022L15 product:unclassifiable, full
           insert sequence
          Length = 3153

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  cagacagcatcttgctggat 104
           ||||||||||||||||||||
Sbjct: 772 cagacagcatcttgctggat 753
to top
>dbj|AK053054.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930036E16 product:hypothetical PDZ domain
            (also known as DHR or GLGF) containing protein, full
            insert sequence
          Length = 3922

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ctgcaccccagcccactgca 41
            ||||||||||||||||||||
Sbjct: 2786 ctgcaccccagcccactgca 2805
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 121      aagaacaataatccgtccatggag 144
                ||||||||||||| ||||||||||
Sbjct: 26896641 aagaacaataatcagtccatggag 26896618
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 414     ggccggtggtcgagccgccc 433
               ||||||||||||||||||||
Sbjct: 5922373 ggccggtggtcgagccgccc 5922392
to top
>ref|NM_175132.2| Mus musculus synaptopodin 2-like (Synpo2l), mRNA
          Length = 3922

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ctgcaccccagcccactgca 41
            ||||||||||||||||||||
Sbjct: 2786 ctgcaccccagcccactgca 2805
to top
>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0503D09
          Length = 144443

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 121   aagaacaataatccgtccatggag 144
             ||||||||||||| ||||||||||
Sbjct: 45232 aagaacaataatcagtccatggag 45209
to top
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 503     aagcgcttcgacctggacaa 522
               ||||||||||||||||||||
Sbjct: 3943555 aagcgcttcgacctggacaa 3943574
to top
>emb|AL591495.12| Mouse DNA sequence from clone RP23-61O3 on chromosome 2, complete
             sequence
          Length = 239758

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cagacagcatcttgctggat 104
             ||||||||||||||||||||
Sbjct: 59863 cagacagcatcttgctggat 59882
to top
>gb|AC100244.12| Mus musculus chromosome 8, clone RP23-64K12, complete sequence
          Length = 212430

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 85    cagacagcatcttgctggatcaca 108
             |||| |||||||||||||||||||
Sbjct: 94947 cagagagcatcttgctggatcaca 94924
to top
>gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, complete sequence
          Length = 188552

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   tcagcctggcctcgagctgc 645
             ||||||||||||||||||||
Sbjct: 90609 tcagcctggcctcgagctgc 90590


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,191,643
Number of Sequences: 3902068
Number of extensions: 5191643
Number of successful extensions: 108236
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107972
Number of HSP's gapped (non-prelim): 261
length of query: 697
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 674
effective length of database: 17,143,297,704
effective search space: 11554582652496
effective search space used: 11554582652496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top