>OPSD_CATBO (Q17296) Rhodopsin|
          Length = 378

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -1

Query: 361 WVAGPHICKIFGQTG---GCGNPFT 296
           WV GP +C+++G TG   GCG+ +T
Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144

>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.9) (Valine--tRNA ligase) (ValRS)
          Length = 1093

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 339 AKYLGRREAAATPSPLCSSATKKKKEIQPASQQVSESVP 223
           AK+  ++ AA    P   SA K+KKE  PA     +S P
Sbjct: 84  AKFAAKQAAAKAKQPAAQSAPKEKKEKTPALPPYEDSTP 122

>AHI1_HUMAN (Q8N157) Jouberin (Abelson helper integration site 1 protein|
           homolog) (AHI-1)
          Length = 1196

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 405 FLSTQGREGGREEWKRKKNYGHKNTFKITPHDRLVLIQSFH 527
           ++ T   +G    WK + N  + NTF++ PH   V    FH
Sbjct: 668 YILTSSSDGTARIWKNEIN--NTNTFRVLPHPSFVYTAKFH 706

>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 321  REAAATPSPLCSSATKKKKEIQPASQQVSESVP 223
            REAA  P    S++T++    Q A+QQ SES P
Sbjct: 3359 REAANAPEEQASTSTEQTPAQQEATQQPSESTP 3391

>Y1791_AQUAE (O67660) Hypothetical protein aq_1791|
          Length = 127

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 359 GSWASYMQNIWADGRLRQPLHLCAVRPRRRRKKYSQ 252
           GS+ S M+N+  DGR ++   LC   P R R+++ +
Sbjct: 16  GSFQSVMENLVKDGRGKEIQILCMHAPPRERRRFKR 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,199,977
Number of Sequences: 219361
Number of extensions: 1462937
Number of successful extensions: 4023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4020
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)