ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30i09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473481.1| Oryza sativa (japonica cultivar-group), predic... 476 e-131
2dbj|AK065413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 476 e-131
3emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 414 e-112
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 414 e-112
5dbj|AK073040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
7dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
8dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
9emb|AL356415.26| Human DNA sequence from clone RP3-337D23 on chr... 44 0.56
10emb|BX571979.8| Zebrafish DNA sequence from clone DKEYP-51C11 in... 42 2.2
11gb|AC007795.1|AC007795 Homo sapiens chromosome 19, cosmid F19415... 42 2.2
12gb|U29185.1|HSU29185 Homo sapiens prion protein (PrP) gene, comp... 40 8.8
13ref|NM_000311.2| Homo sapiens prion protein (p27-30) (Creutzfeld... 40 8.8
14ref|NM_183079.1| Homo sapiens prion protein (p27-30) (Creutzfeld... 40 8.8
15gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
16gb|BC022532.1| Homo sapiens prion protein (p27-30) (Creutzfeldt-... 40 8.8
17gb|BC016809.1| Homo sapiens prion protein (p27-30) (Creutzfeldt-... 40 8.8
18gb|BC012844.1| Homo sapiens prion protein (p27-30) (Creutzfeldt-... 40 8.8
19gb|CP000001.1| Bacillus cereus E33L, complete genome 40 8.8
20emb|AL133396.2| Human DNA sequence from clone RP5-1068H6 on chro... 40 8.8
21emb|AL078597.11|HSDJ442I1 Human DNA sequence from clone RP3-442I... 40 8.8
22gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosom... 40 8.8
23gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Canc... 40 8.8
24emb|CR613118.1| full-length cDNA clone CS0DE006YN17 of Placenta ... 40 8.8
25emb|CR611378.1| full-length cDNA clone CS0DK006YM10 of HeLa cell... 40 8.8
26dbj|AK090575.1| Homo sapiens cDNA FLJ33256 fis, clone ASTRO20055... 40 8.8
27emb|CR597450.1| full-length cDNA clone CS0DN002YF05 of Adult bra... 40 8.8
28ref|NM_176755.1| Drosophila melanogaster RhoGAP16F CG7122-RB, tr... 40 8.8
29gb|AC011614.8| Drosophila melanogaster, chromosome X, region 16F... 40 8.8
30gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, r... 40 8.8
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
33gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosom... 40 8.8
34gb|AY008282.1| Homo sapiens prion protein (PRNP) mRNA, complete cds 40 8.8
35dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
36gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 ... 40 8.8
37dbj|D00015.1|HUMPRION Homo sapiens mRNA for prion protein, compl... 40 8.8
38gb|M13899.1|HUMPRP Human prion protein (PrP) mRNA, complete cds 40 8.8
39emb|X83416.1|HSPRP2 H.sapiens PrP gene, exon 2 40 8.8
40gb|M13667.1|HUMPRP0A Human prion protein 27-30 mRNA, complete cds 40 8.8 
>ref|XM_473481.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2685

 Score =  476 bits (240), Expect = e-131
 Identities = 483/564 (85%)
 Strand = Plus / Minus

                                                                        
Query: 79   ttagttatcacgcttgagtccatggtggggagaactagttgttaagtctagtgaaggact 138
            ||||||| || ||||||||||| |||| ||||| | ||  || ||||||| ||||||| |
Sbjct: 2685 ttagttaccatgcttgagtccaaggtgtggagatccagacgtcaagtctaatgaaggatt 2626

                                                                        
Query: 139  tggcttcacatgatccaccaaggcaggacgagtgaaatgttcagaaggggacagtctatc 198
            | | |||||||||||||| |||||| || | |||||| ||||||| || |||||  ||||
Sbjct: 2625 tagtttcacatgatccacaaaggcatgatgtgtgaaacgttcagatggtgacagcttatc 2566

                                                                        
Query: 199  acgcaaatcaaaaacgttcccaagcctctttccaaattgagggctcagaatgttagcttc 258
            ||||||||||||||| || ||||| ||||||||||| |||||||| ||||||| ||||||
Sbjct: 2565 acgcaaatcaaaaacatttccaagtctctttccaaactgagggcttagaatgtcagcttc 2506

                                                                        
Query: 259  agatactattctctcctgaatcccctgtgagacttgatgcactcgaccaaattgcccaag 318
            |||||| |  |||||||||| |||||| ||||||||||||||||||  ||||||||||||
Sbjct: 2505 agataccaccctctcctgaagcccctgagagacttgatgcactcgaataaattgcccaag 2446

                                                                        
Query: 319  gttgcgatctgtaggccggttggggaagtgatcatctgggcctcttgatgcgattgcaaa 378
             |   |||||||||||||| |||  ||| ||||||| |||| |||||||| |||||||||
Sbjct: 2445 atcaggatctgtaggccggctggcaaagagatcatccgggcttcttgatgggattgcaaa 2386

                                                                        
Query: 379  tccttcattgctgtaggttggttgctttgaatgattaaagggaatagcaccattaccacc 438
            ||| || ||||||||||||| ||||||   ||| ||||| ||||||||||||||||||||
Sbjct: 2385 tccctcgttgctgtaggttgattgcttcagatggttaaaaggaatagcaccattaccacc 2326

                                                                        
Query: 439  agacaggggagtagaagcgcctgaaagggttctgggacttgaaattggagagggtgacat 498
            |||||| || || || | |||||||   |||||||| |||||||| ||||| ||||||||
Sbjct: 2325 agacagaggcgtggaggtgcctgaagtagttctggggcttgaaataggagaaggtgacat 2266

                                                                        
Query: 499  tcggccatttgtatgttgcggagaccttgaccttagcagaggacttccacatggagaaac 558
            || |||||| | |||||| || ||||||||  |||||| |||||||||||||||||||||
Sbjct: 2265 tctgccattggaatgttgtggggaccttgattttagcaaaggacttccacatggagaaac 2206

                                                                        
Query: 559  tggacaggatatattgctccgtatatggatatcgctatgcttcgaagaaaattttgcacc 618
            |||||| ||||||||||| |||||| ||||||| || || || |||||||||||||||||
Sbjct: 2205 tggacaagatatattgcttcgtatacggatatcactgtgttttgaagaaaattttgcacc 2146

                                    
Query: 619  ccttctctggtaaattgtctgacc 642
             |||||||||||||||||||||||
Sbjct: 2145 tcttctctggtaaattgtctgacc 2122
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>dbj|AK065413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021I12, full
            insert sequence
          Length = 3799

 Score =  476 bits (240), Expect = e-131
 Identities = 483/564 (85%)
 Strand = Plus / Minus

                                                                        
Query: 79   ttagttatcacgcttgagtccatggtggggagaactagttgttaagtctagtgaaggact 138
            ||||||| || ||||||||||| |||| ||||| | ||  || ||||||| ||||||| |
Sbjct: 3115 ttagttaccatgcttgagtccaaggtgtggagatccagacgtcaagtctaatgaaggatt 3056

                                                                        
Query: 139  tggcttcacatgatccaccaaggcaggacgagtgaaatgttcagaaggggacagtctatc 198
            | | |||||||||||||| |||||| || | |||||| ||||||| || |||||  ||||
Sbjct: 3055 tagtttcacatgatccacaaaggcatgatgtgtgaaacgttcagatggtgacagcttatc 2996

                                                                        
Query: 199  acgcaaatcaaaaacgttcccaagcctctttccaaattgagggctcagaatgttagcttc 258
            ||||||||||||||| || ||||| ||||||||||| |||||||| ||||||| ||||||
Sbjct: 2995 acgcaaatcaaaaacatttccaagtctctttccaaactgagggcttagaatgtcagcttc 2936

                                                                        
Query: 259  agatactattctctcctgaatcccctgtgagacttgatgcactcgaccaaattgcccaag 318
            |||||| |  |||||||||| |||||| ||||||||||||||||||  ||||||||||||
Sbjct: 2935 agataccaccctctcctgaagcccctgagagacttgatgcactcgaataaattgcccaag 2876

                                                                        
Query: 319  gttgcgatctgtaggccggttggggaagtgatcatctgggcctcttgatgcgattgcaaa 378
             |   |||||||||||||| |||  ||| ||||||| |||| |||||||| |||||||||
Sbjct: 2875 atcaggatctgtaggccggctggcaaagagatcatccgggcttcttgatgggattgcaaa 2816

                                                                        
Query: 379  tccttcattgctgtaggttggttgctttgaatgattaaagggaatagcaccattaccacc 438
            ||| || ||||||||||||| ||||||   ||| ||||| ||||||||||||||||||||
Sbjct: 2815 tccctcgttgctgtaggttgattgcttcagatggttaaaaggaatagcaccattaccacc 2756

                                                                        
Query: 439  agacaggggagtagaagcgcctgaaagggttctgggacttgaaattggagagggtgacat 498
            |||||| || || || | |||||||   |||||||| |||||||| ||||| ||||||||
Sbjct: 2755 agacagaggcgtggaggtgcctgaagtagttctggggcttgaaataggagaaggtgacat 2696

                                                                        
Query: 499  tcggccatttgtatgttgcggagaccttgaccttagcagaggacttccacatggagaaac 558
            || |||||| | |||||| || ||||||||  |||||| |||||||||||||||||||||
Sbjct: 2695 tctgccattggaatgttgtggggaccttgattttagcaaaggacttccacatggagaaac 2636

                                                                        
Query: 559  tggacaggatatattgctccgtatatggatatcgctatgcttcgaagaaaattttgcacc 618
            |||||| ||||||||||| |||||| ||||||| || || || |||||||||||||||||
Sbjct: 2635 tggacaagatatattgcttcgtatacggatatcactgtgttttgaagaaaattttgcacc 2576

                                    
Query: 619  ccttctctggtaaattgtctgacc 642
             |||||||||||||||||||||||
Sbjct: 2575 tcttctctggtaaattgtctgacc 2552
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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score =  414 bits (209), Expect = e-112
 Identities = 437/513 (85%)
 Strand = Plus / Plus

                                                                         
Query: 79    ttagttatcacgcttgagtccatggtggggagaactagttgttaagtctagtgaaggact 138
             ||||||| || ||||||||||| |||| ||||| | ||  || ||||||| ||||||| |
Sbjct: 30961 ttagttaccatgcttgagtccaaggtgtggagatccagacgtcaagtctaatgaaggatt 31020

                                                                         
Query: 139   tggcttcacatgatccaccaaggcaggacgagtgaaatgttcagaaggggacagtctatc 198
             | | |||||||||||||| |||||| || | |||||| ||||||| || |||||  ||||
Sbjct: 31021 tagtttcacatgatccacaaaggcatgatgtgtgaaacgttcagatggtgacagcttatc 31080

                                                                         
Query: 199   acgcaaatcaaaaacgttcccaagcctctttccaaattgagggctcagaatgttagcttc 258
             ||||||||||||||| || ||||| ||||||||||| |||||||| ||||||| ||||||
Sbjct: 31081 acgcaaatcaaaaacatttccaagtctctttccaaactgagggcttagaatgtcagcttc 31140

                                                                         
Query: 259   agatactattctctcctgaatcccctgtgagacttgatgcactcgaccaaattgcccaag 318
             |||||| |  |||||||||| |||||| ||||||||||||||||||  ||||||||||||
Sbjct: 31141 agataccaccctctcctgaagcccctgagagacttgatgcactcgaataaattgcccaag 31200

                                                                         
Query: 319   gttgcgatctgtaggccggttggggaagtgatcatctgggcctcttgatgcgattgcaaa 378
              |   |||||||||||||| |||  ||| ||||||| |||| |||||||| |||||||||
Sbjct: 31201 atcaggatctgtaggccggctggcaaagagatcatccgggcttcttgatgggattgcaaa 31260

                                                                         
Query: 379   tccttcattgctgtaggttggttgctttgaatgattaaagggaatagcaccattaccacc 438
             ||| || ||||||||||||| ||||||   ||| ||||| ||||||||||||||||||||
Sbjct: 31261 tccctcgttgctgtaggttgattgcttcagatggttaaaaggaatagcaccattaccacc 31320

                                                                         
Query: 439   agacaggggagtagaagcgcctgaaagggttctgggacttgaaattggagagggtgacat 498
             |||||| || || || | |||||||   |||||||| |||||||| ||||| ||||||||
Sbjct: 31321 agacagaggcgtggaggtgcctgaagtagttctggggcttgaaataggagaaggtgacat 31380

                                                                         
Query: 499   tcggccatttgtatgttgcggagaccttgaccttagcagaggacttccacatggagaaac 558
             || |||||| | |||||| || ||||||||  |||||| |||||||||||||||||||||
Sbjct: 31381 tctgccattggaatgttgtggggaccttgattttagcaaaggacttccacatggagaaac 31440

                                              
Query: 559   tggacaggatatattgctccgtatatggatatc 591
             |||||| ||||||||||| |||||| |||||||
Sbjct: 31441 tggacaagatatattgcttcgtatacggatatc 31473



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                      
Query: 602   gaagaaaattttgcaccccttctctggtaaattgtctgacc 642
             ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 31755 gaagaaaattttgcacctcttctctggtaaattgtctgacc 31795
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  414 bits (209), Expect = e-112
 Identities = 437/513 (85%)
 Strand = Plus / Plus

                                                                            
Query: 79       ttagttatcacgcttgagtccatggtggggagaactagttgttaagtctagtgaaggact 138
                ||||||| || ||||||||||| |||| ||||| | ||  || ||||||| ||||||| |
Sbjct: 28023735 ttagttaccatgcttgagtccaaggtgtggagatccagacgtcaagtctaatgaaggatt 28023794

                                                                            
Query: 139      tggcttcacatgatccaccaaggcaggacgagtgaaatgttcagaaggggacagtctatc 198
                | | |||||||||||||| |||||| || | |||||| ||||||| || |||||  ||||
Sbjct: 28023795 tagtttcacatgatccacaaaggcatgatgtgtgaaacgttcagatggtgacagcttatc 28023854

                                                                            
Query: 199      acgcaaatcaaaaacgttcccaagcctctttccaaattgagggctcagaatgttagcttc 258
                ||||||||||||||| || ||||| ||||||||||| |||||||| ||||||| ||||||
Sbjct: 28023855 acgcaaatcaaaaacatttccaagtctctttccaaactgagggcttagaatgtcagcttc 28023914

                                                                            
Query: 259      agatactattctctcctgaatcccctgtgagacttgatgcactcgaccaaattgcccaag 318
                |||||| |  |||||||||| |||||| ||||||||||||||||||  ||||||||||||
Sbjct: 28023915 agataccaccctctcctgaagcccctgagagacttgatgcactcgaataaattgcccaag 28023974

                                                                            
Query: 319      gttgcgatctgtaggccggttggggaagtgatcatctgggcctcttgatgcgattgcaaa 378
                 |   |||||||||||||| |||  ||| ||||||| |||| |||||||| |||||||||
Sbjct: 28023975 atcaggatctgtaggccggctggcaaagagatcatccgggcttcttgatgggattgcaaa 28024034

                                                                            
Query: 379      tccttcattgctgtaggttggttgctttgaatgattaaagggaatagcaccattaccacc 438
                ||| || ||||||||||||| ||||||   ||| ||||| ||||||||||||||||||||
Sbjct: 28024035 tccctcgttgctgtaggttgattgcttcagatggttaaaaggaatagcaccattaccacc 28024094

                                                                            
Query: 439      agacaggggagtagaagcgcctgaaagggttctgggacttgaaattggagagggtgacat 498
                |||||| || || || | |||||||   |||||||| |||||||| ||||| ||||||||
Sbjct: 28024095 agacagaggcgtggaggtgcctgaagtagttctggggcttgaaataggagaaggtgacat 28024154

                                                                            
Query: 499      tcggccatttgtatgttgcggagaccttgaccttagcagaggacttccacatggagaaac 558
                || |||||| | |||||| || ||||||||  |||||| |||||||||||||||||||||
Sbjct: 28024155 tctgccattggaatgttgtggggaccttgattttagcaaaggacttccacatggagaaac 28024214

                                                 
Query: 559      tggacaggatatattgctccgtatatggatatc 591
                |||||| ||||||||||| |||||| |||||||
Sbjct: 28024215 tggacaagatatattgcttcgtatacggatatc 28024247



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                         
Query: 602      gaagaaaattttgcaccccttctctggtaaattgtctgacc 642
                ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 28024529 gaagaaaattttgcacctcttctctggtaaattgtctgacc 28024569
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>dbj|AK073040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000A12, full
            insert sequence
          Length = 3728

 Score =  121 bits (61), Expect = 3e-24
 Identities = 181/221 (81%)
 Strand = Plus / Minus

                                                                        
Query: 413  ttaaagggaatagcaccattaccaccagacaggggagtagaagcgcctgaaagggttctg 472
            ||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||   ||||| 
Sbjct: 2819 ttaaaaggaatagctccattaccaccagtcagaggagtggaagcacctgaagtagttctt 2760

                                                                        
Query: 473  ggacttgaaattggagagggtgacattcggccatttgtatgttgcggagaccttgacctt 532
            || || ||||| |||||||||||||||   ||||||  |||||| ||||| |||||||| 
Sbjct: 2759 gggctcgaaatcggagagggtgacattataccattttgatgttgtggagatcttgacctc 2700

                                                                        
Query: 533  agcagaggacttccacatggagaaactggacaggatatattgctccgtatatggatatcg 592
            ||  |||| || |||||||||||||| || || ||||||| ||| |||| ||| ||||| 
Sbjct: 2699 agatgagggctcccacatggagaaacagggcaagatatatagcttcgtacatgaatatca 2640

                                                     
Query: 593  ctatgcttcgaagaaaattttgcaccccttctctggtaaat 633
            || |||   ||||||||||| ||| | ||||||||||||||
Sbjct: 2639 ctgtgcacagaagaaaatttagcagctcttctctggtaaat 2599



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 228  ttccaaattgagggctcagaatgttagcttcag 260
            |||||||||||||||||||||||| ||||||||
Sbjct: 3004 ttccaaattgagggctcagaatgtcagcttcag 2972
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  101 bits (51), Expect = 3e-18
 Identities = 147/179 (82%)
 Strand = Plus / Plus

                                                                            
Query: 413      ttaaagggaatagcaccattaccaccagacaggggagtagaagcgcctgaaagggttctg 472
                ||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||   ||||| 
Sbjct: 27068853 ttaaaaggaatagctccattaccaccagtcagaggagtggaagcacctgaagtagttctt 27068912

                                                                            
Query: 473      ggacttgaaattggagagggtgacattcggccatttgtatgttgcggagaccttgacctt 532
                || || ||||| |||||||||||||||   ||||||  |||||| ||||| |||||||| 
Sbjct: 27068913 gggctcgaaatcggagagggtgacattataccattttgatgttgtggagatcttgacctc 27068972

                                                                           
Query: 533      agcagaggacttccacatggagaaactggacaggatatattgctccgtatatggatatc 591
                ||  |||| || |||||||||||||| || || ||||||| ||| |||| ||| |||||
Sbjct: 27068973 agatgagggctcccacatggagaaacagggcaagatatatagcttcgtacatgaatatc 27069031



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 228      ttccaaattgagggctcagaatgttagcttcag 260
                |||||||||||||||||||||||| ||||||||
Sbjct: 27068668 ttccaaattgagggctcagaatgtcagcttcag 27068700



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 602      gaagaaaattttgcaccccttctctggtaaat 633
                ||||||||||| ||| | ||||||||||||||
Sbjct: 27069706 gaagaaaatttagcagctcttctctggtaaat 27069737
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>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1486_E07
          Length = 110494

 Score =  101 bits (51), Expect = 3e-18
 Identities = 147/179 (82%)
 Strand = Plus / Plus

                                                                         
Query: 413   ttaaagggaatagcaccattaccaccagacaggggagtagaagcgcctgaaagggttctg 472
             ||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||   ||||| 
Sbjct: 40502 ttaaaaggaatagctccattaccaccagtcagaggagtggaagcacctgaagtagttctt 40561

                                                                         
Query: 473   ggacttgaaattggagagggtgacattcggccatttgtatgttgcggagaccttgacctt 532
             || || ||||| |||||||||||||||   ||||||  |||||| ||||| |||||||| 
Sbjct: 40562 gggctcgaaatcggagagggtgacattataccattttgatgttgtggagatcttgacctc 40621

                                                                        
Query: 533   agcagaggacttccacatggagaaactggacaggatatattgctccgtatatggatatc 591
             ||  |||| || |||||||||||||| || || ||||||| ||| |||| ||| |||||
Sbjct: 40622 agatgagggctcccacatggagaaacagggcaagatatatagcttcgtacatgaatatc 40680



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 228   ttccaaattgagggctcagaatgttagcttcag 260
             |||||||||||||||||||||||| ||||||||
Sbjct: 40317 ttccaaattgagggctcagaatgtcagcttcag 40349



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 602   gaagaaaattttgcaccccttctctggtaaat 633
             ||||||||||| ||| | ||||||||||||||
Sbjct: 41355 gaagaaaatttagcagctcttctctggtaaat 41386
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>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0461B08
          Length = 153743

 Score =  101 bits (51), Expect = 3e-18
 Identities = 147/179 (82%)
 Strand = Plus / Plus

                                                                          
Query: 413    ttaaagggaatagcaccattaccaccagacaggggagtagaagcgcctgaaagggttctg 472
              ||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||   ||||| 
Sbjct: 122055 ttaaaaggaatagctccattaccaccagtcagaggagtggaagcacctgaagtagttctt 122114

                                                                          
Query: 473    ggacttgaaattggagagggtgacattcggccatttgtatgttgcggagaccttgacctt 532
              || || ||||| |||||||||||||||   ||||||  |||||| ||||| |||||||| 
Sbjct: 122115 gggctcgaaatcggagagggtgacattataccattttgatgttgtggagatcttgacctc 122174

                                                                         
Query: 533    agcagaggacttccacatggagaaactggacaggatatattgctccgtatatggatatc 591
              ||  |||| || |||||||||||||| || || ||||||| ||| |||| ||| |||||
Sbjct: 122175 agatgagggctcccacatggagaaacagggcaagatatatagcttcgtacatgaatatc 122233



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                               
Query: 228    ttccaaattgagggctcagaatgttagcttcag 260
              |||||||||||||||||||||||| ||||||||
Sbjct: 121870 ttccaaattgagggctcagaatgtcagcttcag 121902



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 602    gaagaaaattttgcaccccttctctggtaaat 633
              ||||||||||| ||| | ||||||||||||||
Sbjct: 122908 gaagaaaatttagcagctcttctctggtaaat 122939
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>emb|AL356415.26| Human DNA sequence from clone RP3-337D23 on chromosome 6q23.3-25.3
             Contains the 5' end of tomosyn (LOC134957) (contains
             FLJ30922), part of a putative novel gene, a putative novel
             gene and a CpG island, complete sequence
          Length = 140999

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 553   agaaactggacaggatatattg 574
             ||||||||||||||||||||||
Sbjct: 30955 agaaactggacaggatatattg 30934
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>emb|BX571979.8| Zebrafish DNA sequence from clone DKEYP-51C11 in linkage group 13,
             complete sequence
          Length = 165275

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 290   acttgatgcactcgaccaaat 310
             |||||||||||||||||||||
Sbjct: 49599 acttgatgcactcgaccaaat 49579
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>gb|AC007795.1|AC007795 Homo sapiens chromosome 19, cosmid F19415, complete sequence
          Length = 45896

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 240  ggctcagaatgttagcttcag 260
            |||||||||||||||||||||
Sbjct: 5193 ggctcagaatgttagcttcag 5173
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>gb|U29185.1|HSU29185 Homo sapiens prion protein (PrP) gene, complete cds
          Length = 35522

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 460   tgaaagggttctgggacttgaaat 483
             ||||||| ||||||||||||||||
Sbjct: 26909 tgaaaggcttctgggacttgaaat 26932
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>ref|NM_000311.2| Homo sapiens prion protein (p27-30) (Creutzfeldt-Jakob disease,
            Gerstmann-Strausler-Scheinker syndrome, fatal familial
            insomnia) (PRNP), transcript variant 1, mRNA
          Length = 2483

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1560 tgaaaggcttctgggacttgaaat 1583
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>ref|NM_183079.1| Homo sapiens prion protein (p27-30) (Creutzfeldt-Jakob disease,
            Gerstmann-Strausler-Scheinker syndrome, fatal familial
            insomnia) (PRNP), transcript variant 2, mRNA
          Length = 2479

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1556 tgaaaggcttctgggacttgaaat 1579
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>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05,
              complete sequence
          Length = 196284

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 243    tcagaatgttagcttcagat 262
              ||||||||||||||||||||
Sbjct: 153045 tcagaatgttagcttcagat 153026
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>gb|BC022532.1| Homo sapiens prion protein (p27-30) (Creutzfeldt-Jakob disease,
            Gerstmann-Strausler-Scheinker syndrome, fatal familial
            insomnia), transcript variant 2, mRNA (cDNA clone
            MGC:26679 IMAGE:4813982), complete cds
          Length = 2443

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1520 tgaaaggcttctgggacttgaaat 1543
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>gb|BC016809.1| Homo sapiens prion protein (p27-30) (Creutzfeldt-Jakob disease,
           Gerstmann-Strausler-Scheinker syndrome, fatal familial
           insomnia), mRNA (cDNA clone IMAGE:4078124)
          Length = 1596

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 460 tgaaagggttctgggacttgaaat 483
           ||||||| ||||||||||||||||
Sbjct: 660 tgaaaggcttctgggacttgaaat 683
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>gb|BC012844.1| Homo sapiens prion protein (p27-30) (Creutzfeldt-Jakob disease,
            Gerstmann-Strausler-Scheinker syndrome, fatal familial
            insomnia), transcript variant 2, mRNA (cDNA clone
            MGC:8899 IMAGE:3863784), complete cds
          Length = 2431

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1507 tgaaaggcttctgggacttgaaat 1530
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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 603     aagaaaattttgcacccctt 622
               ||||||||||||||||||||
Sbjct: 1969542 aagaaaattttgcacccctt 1969523
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>emb|AL133396.2| Human DNA sequence from clone RP5-1068H6 on chromosome 20p12.1-13
             Contains part of a ribosomal protein S4 pseudogene, the
             PRNP gene for prion protein (p27-30) (Creutzfeld-Jakob
             disease, Gerstmann-Strausler-Scheinker syndrome, fatal
             familial insomnia), the PRND gene for prion protein 2
             (dublet), a novel gene, an isopentenyl-diphosphate delta
             isomerase 1 (IDI1) pseudogene and two CpG islands,
             complete sequence
          Length = 148497

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 460   tgaaagggttctgggacttgaaat 483
             ||||||| ||||||||||||||||
Sbjct: 71073 tgaaaggcttctgggacttgaaat 71096
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>emb|AL078597.11|HSDJ442I1 Human DNA sequence from clone RP3-442I1 on chromosome 6q12-13 Contains
             the 5' end of a novel gene, complete sequence
          Length = 138209

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   ctctcctgaatcccctgtga 288
             ||||||||||||||||||||
Sbjct: 11996 ctctcctgaatcccctgtga 11977
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>gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosome 16, complete sequence
          Length = 217725

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    aagtctagtgaaggacttgg 141
              ||||||||||||||||||||
Sbjct: 199020 aagtctagtgaaggacttgg 199039
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>gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 199446

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   tggggagaactagttgttaagtct 127
             |||||||||||||||| |||||||
Sbjct: 29334 tggggagaactagttgataagtct 29311
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>emb|CR613118.1| full-length cDNA clone CS0DE006YN17 of Placenta of Homo sapiens
           (human)
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 460 tgaaagggttctgggacttgaaat 483
           ||||||| ||||||||||||||||
Sbjct: 705 tgaaaggcttctgggacttgaaat 728
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>emb|CR611378.1| full-length cDNA clone CS0DK006YM10 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1586

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 460 tgaaagggttctgggacttgaaat 483
           ||||||| ||||||||||||||||
Sbjct: 705 tgaaaggcttctgggacttgaaat 728
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>dbj|AK090575.1| Homo sapiens cDNA FLJ33256 fis, clone ASTRO2005557, highly similar to
            MAJOR PRION PROTEIN PRECURSOR
          Length = 2338

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1431 tgaaaggcttctgggacttgaaat 1454
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>emb|CR597450.1| full-length cDNA clone CS0DN002YF05 of Adult brain of Homo sapiens
           (human)
          Length = 1108

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 460 tgaaagggttctgggacttgaaat 483
           ||||||| ||||||||||||||||
Sbjct: 259 tgaaaggcttctgggacttgaaat 282
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>ref|NM_176755.1| Drosophila melanogaster RhoGAP16F CG7122-RB, transcript variant B
           (RhoGAP16F), mRNA
          Length = 2611

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 543 ttccacatggagaaactgga 562
           ||||||||||||||||||||
Sbjct: 337 ttccacatggagaaactgga 318
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>gb|AC011614.8| Drosophila melanogaster, chromosome X, region 16F-17A, BAC clone
              BACR48L05, complete sequence
          Length = 177138

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 543    ttccacatggagaaactgga 562
              ||||||||||||||||||||
Sbjct: 144932 ttccacatggagaaactgga 144951
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>gb|AC012163.13|AC012163 Drosophila melanogaster, chromosome X, region 16F-16F, BAC clone
              BACR17D02, complete sequence
          Length = 186748

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    ttccacatggagaaactgga 562
              ||||||||||||||||||||
Sbjct: 185730 ttccacatggagaaactgga 185711
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 243      tcagaatgttagcttcagat 262
                ||||||||||||||||||||
Sbjct: 26301997 tcagaatgttagcttcagat 26301978
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     gagtccatggtggggagaac 113
              ||||||||||||||||||||
Sbjct: 748536 gagtccatggtggggagaac 748555
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>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    aagtctagtgaaggacttgg 141
              ||||||||||||||||||||
Sbjct: 129060 aagtctagtgaaggacttgg 129041
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>gb|AY008282.1| Homo sapiens prion protein (PRNP) mRNA, complete cds
          Length = 2413

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1503 tgaaaggcttctgggacttgaaat 1526
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>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gagtccatggtggggagaac 113
             ||||||||||||||||||||
Sbjct: 25736 gagtccatggtggggagaac 25755
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>gb|AE003507.3| Drosophila melanogaster chromosome X, section 59 of 74 of the complete
              sequence
          Length = 299804

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    ttccacatggagaaactgga 562
              ||||||||||||||||||||
Sbjct: 240903 ttccacatggagaaactgga 240884
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>dbj|D00015.1|HUMPRION Homo sapiens mRNA for prion protein, complete cds
          Length = 2422

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1512 tgaaaggcttctgggacttgaaat 1535
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>gb|M13899.1|HUMPRP Human prion protein (PrP) mRNA, complete cds
          Length = 2415

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1509 tgaaaggcttctgggacttgaaat 1532
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>emb|X83416.1|HSPRP2 H.sapiens PrP gene, exon 2
          Length = 2301

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1393 tgaaaggcttctgggacttgaaat 1416
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>gb|M13667.1|HUMPRP0A Human prion protein 27-30 mRNA, complete cds
          Length = 2420

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 460  tgaaagggttctgggacttgaaat 483
            ||||||| ||||||||||||||||
Sbjct: 1512 tgaaaggcttctgggacttgaaat 1535


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,114,864
Number of Sequences: 3902068
Number of extensions: 5114864
Number of successful extensions: 87916
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87740
Number of HSP's gapped (non-prelim): 176
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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