| Clone Name | rbaal2a07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ093360.1| Puccinellia tenuiflora NADH-dependent glutamate synthase protein mRNA, partial cds Length = 495 Score = 309 bits (156), Expect = 6e-81 Identities = 222/244 (90%) Strand = Plus / Minus Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||||||||||||||||||||| ||||| ||||| || || || | |||| Sbjct: 491 gtgatggcccaaacaaccagtgattgcccacgtctgcagtccccggcggcaaagacgcca 432 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 526 |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 431 tccacactggtcgcaaagtgtccaaattgggctttgaagttggaccggttgtccttctct 372 Query: 527 aaacccaattggtcagcgattttctcctcagggcccaggaatcccatggcaaggagaaca 586 ||||||| || |||| ||| || | ||||||||||||||||||||||||||||| ||| Sbjct: 371 aaacccagtttctcagggatagtcgcttcagggcccaggaatcccatggcaaggaggaca 312 Query: 587 aggtctgcctcgatgatctcttgtgatccttcaatctccttgaattggaaccttccatct 646 ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 311 aggtctgcctcaatgatctcttgtgatccttctatctccttgaattggaatcttccatct 252 Query: 647 actt 650 |||| Sbjct: 251 actt 248
>ref|NM_192058.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 6474 Score = 236 bits (119), Expect = 7e-59 Identities = 281/335 (83%) Strand = Plus / Minus Query: 316 acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 375 |||||||||| ||| || ||| | |||||||||| |||||||| ||||||||||||||| Sbjct: 6450 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 6391 Query: 376 gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 435 ||| || || |||||||||| || || || ||||||||||||||||| |||||||| || Sbjct: 6390 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 6331 Query: 436 acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 495 ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| ||||||||| Sbjct: 6330 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 6271 Query: 496 agctttgaagttggaccggttgtctttctctaaacccaattggtcagcgattttctcctc 555 |||||||||||| ||||||||||||||||| ||||| | || ||||| || || | || Sbjct: 6270 agctttgaagttagaccggttgtctttctccaaacctagtttctcagcaatagtcgcttc 6211 Query: 556 agggcccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtgatcc 615 |||||| ||||| ||||| || ||||| ||||| || ||||| ||| |||| | ||| || Sbjct: 6210 agggcctaggaaccccatagctaggaggacaagatcagcctcaatggtctcgtttgagcc 6151 Query: 616 ttcaatctccttgaattggaaccttccatctactt 650 |||||| || ||||| ||||| || ||||| |||| Sbjct: 6150 ttcaatttctttgaactggaatctcccatcgactt 6116
>dbj|AB008845.1| Oryza sativa mRNA for NADH dependent Glutamate Synthase, complete cds Length = 7037 Score = 228 bits (115), Expect = 2e-56 Identities = 280/335 (83%) Strand = Plus / Minus Query: 316 acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 375 |||||||||| ||| || ||| | |||||||||| |||||||| ||||||||||||||| Sbjct: 6738 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 6679 Query: 376 gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 435 ||| || || |||||||||| || || || ||||||||||||||||| |||||||| || Sbjct: 6678 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 6619 Query: 436 acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 495 ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| ||||||||| Sbjct: 6618 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 6559 Query: 496 agctttgaagttggaccggttgtctttctctaaacccaattggtcagcgattttctcctc 555 |||||||||||| ||||||||||||||||| ||||| | || ||||| || || | || Sbjct: 6558 agctttgaagttagaccggttgtctttctccaaacctagtttctcagcaatagtcgcttc 6499 Query: 556 agggcccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtgatcc 615 |||||| ||||| ||||| || ||||| ||||| || ||||| ||| |||| | ||| || Sbjct: 6498 agggcctaggaaccccatagctaggaggacaagatcagcctcaatggtctcgtttgagcc 6439 Query: 616 ttcaatctccttgaattggaaccttccatctactt 650 |||||| || || || ||||| || ||||| |||| Sbjct: 6438 ttcaatttctttcaactggaatctcccatcgactt 6404
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 214 bits (108), Expect = 3e-52 Identities = 189/216 (87%) Strand = Plus / Plus Query: 316 acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 375 |||||||||| ||| || ||| | |||||||||| |||||||| ||||||||||||||| Sbjct: 28084770 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 28084829 Query: 376 gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 435 ||| || || |||||||||| || || || ||||||||||||||||| |||||||| || Sbjct: 28084830 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 28084889 Query: 436 acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 495 ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| ||||||||| Sbjct: 28084890 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 28084949 Query: 496 agctttgaagttggaccggttgtctttctctaaacc 531 |||||||||||| ||||||||||||||||| ||||| Sbjct: 28084950 agctttgaagttagaccggttgtctttctccaaacc 28084985 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 19 acaatnttgagcaaccaaaaata 41 ||||| ||||||||||||||||| Sbjct: 14433140 acaatattgagcaaccaaaaata 14433162
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0019E03 Length = 152092 Score = 214 bits (108), Expect = 3e-52 Identities = 189/216 (87%) Strand = Plus / Plus Query: 316 acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 375 |||||||||| ||| || ||| | |||||||||| |||||||| ||||||||||||||| Sbjct: 99969 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 100028 Query: 376 gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 435 ||| || || |||||||||| || || || ||||||||||||||||| |||||||| || Sbjct: 100029 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 100088 Query: 436 acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 495 ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| ||||||||| Sbjct: 100089 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 100148 Query: 496 agctttgaagttggaccggttgtctttctctaaacc 531 |||||||||||| ||||||||||||||||| ||||| Sbjct: 100149 agctttgaagttagaccggttgtctttctccaaacc 100184
>dbj|AB001916.1| Oryza sativa gene for NADH-dependent glutamate synthase Length = 17070 Score = 214 bits (108), Expect = 3e-52 Identities = 189/216 (87%) Strand = Plus / Minus Query: 316 acctgcacccaaggcagtgatgccttctgcggcattttgttcatcccttgacaagtactt 375 |||||||||| ||| || ||| | |||||||||| |||||||| ||||||||||||||| Sbjct: 14265 acctgcacccgagggggttatgtcctctgcggcatcttgttcattccttgacaagtactt 14206 Query: 376 gtcaaccgcggcagcagcttcacgtccttcagtgatggcccaaacaaccagtgattgccc 435 ||| || || |||||||||| || || || ||||||||||||||||| |||||||| || Sbjct: 14205 gtcgacagctgcagcagcttgccgcccctcggtgatggcccaaacaacaagtgattgtcc 14146 Query: 436 acgcctgcaatccccagcagcgaaaatgccatccacactggtcgcgaagtgtccaaattg 495 ||| ||||| ||||| ||||| |||||||||||||||||||| || |||| ||||||||| Sbjct: 14145 acgtctgcagtccccggcagcaaaaatgccatccacactggttgcaaagtttccaaattg 14086 Query: 496 agctttgaagttggaccggttgtctttctctaaacc 531 |||||||||||| ||||||||||||||||| ||||| Sbjct: 14085 agctttgaagttagaccggttgtctttctccaaacc 14050
>gb|AY105675.1| Zea mays PCO100130 mRNA sequence Length = 1107 Score = 190 bits (96), Expect = 4e-45 Identities = 252/304 (82%) Strand = Plus / Minus Query: 347 gcattttgttcatcccttgacaagtacttgtcaaccgcggcagcagcttcacgtccttca 406 ||||| || |||| |||||||||||||||||| ||||| |||||||| | || || || Sbjct: 752 gcattctgatcataccttgacaagtacttgtctaccgctgcagcagcctgccgcccctcc 693 Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||| ||||||||||| ||||| ||||| ||||| || || || | ||| Sbjct: 692 gtgatggcccaaaccaccagtgattgtccacgtctgcagtccccggcggcaaacacacca 633 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 526 || |||||||| ||||||| |||||| || ||||||||||| || | |||||| ||||| Sbjct: 632 tcgacactggtagcgaagtctccaaactgcgctttgaagtttgatctgttgtccttctcc 573 Query: 527 aaacccaattggtcagcgattttctcctcagggcccaggaatcccatggcaaggagaaca 586 |||||||||| ||||| ||| || | ||||| |||| ||||||||| || ||||| || Sbjct: 572 aaacccaatttctcagctattgtcgcttcaggacccaagaatcccatagctaggaggacg 513 Query: 587 aggtctgcctcgatgatctcttgtgatccttcaatctccttgaattggaaccttccatct 646 || || ||||| || ||||||| ||||||||| |||||||||| ||| || ||||||||| Sbjct: 512 agatcagcctcaataatctcttctgatccttccatctccttgagttgaaatcttccatct 453 Query: 647 actt 650 |||| Sbjct: 452 actt 449
>gb|BT024053.1| Zea mays clone EL01N0438E02 mRNA sequence Length = 2225 Score = 182 bits (92), Expect = 1e-42 Identities = 251/304 (82%) Strand = Plus / Minus Query: 347 gcattttgttcatcccttgacaagtacttgtcaaccgcggcagcagcttcacgtccttca 406 ||||| || |||| |||||||||||||||||| ||||| |||||||| | || || || Sbjct: 1884 gcattctgatcataccttgacaagtacttgtctaccgctgcagcagcctgccgcccctcc 1825 Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||| ||||||||||| ||||| ||||| ||||| || || || | ||| Sbjct: 1824 gtgatggcccaaaccaccagtgattgtccacgtctgcagtccccggcggcaaacacacca 1765 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 526 || |||||||| ||||||| |||||| || ||||||||||| || | |||||| ||||| Sbjct: 1764 tcgacactggtagcgaagtctccaaactgcgctttgaagtttgatctgttgtccttctcc 1705 Query: 527 aaacccaattggtcagcgattttctcctcagggcccaggaatcccatggcaaggagaaca 586 |||||||||| ||||| ||| || | ||||| |||| ||||||||| || ||||| || Sbjct: 1704 aaacccaatttctcagctattgtcgcttcaggacccaagaatcccatagctaggaggacg 1645 Query: 587 aggtctgcctcgatgatctcttgtgatccttcaatctccttgaattggaaccttccatct 646 || || ||||| || ||||||| ||||||||| |||||||||| ||| || |||| |||| Sbjct: 1644 agatcagcctcaataatctcttctgatccttccatctccttgagttgaaatcttctatct 1585 Query: 647 actt 650 |||| Sbjct: 1584 actt 1581
>ref|XM_475886.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1830 Score = 135 bits (68), Expect = 2e-28 Identities = 194/236 (82%) Strand = Plus / Minus Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||||||||||||||||||||| ||||| || |||||||| || | || Sbjct: 1706 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 1647 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 526 |||||| ||||||| |||| ||||||||||||||||||||| |||| |||||| ||| Sbjct: 1646 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacctcatgtcttgttct 1587 Query: 527 aaacccaattggtcagcgattttctcctcagggcccaggaatcccatggcaaggagaaca 586 | ||||| | || ||| | || | || || |||||||||||||| || | ||| ||| Sbjct: 1586 agacccagcttgttagcaacagtcgcttcgggacccaggaatcccatagctaagaggaca 1527 Query: 587 aggtctgcctcgatgatctcttgtgatccttcaatctccttgaattggaaccttcc 642 || || ||||| || || |||| ||||||||||| |||||||||||||||||||| Sbjct: 1526 agatcggcctcaataatttcttctgatccttcaacttccttgaattggaaccttcc 1471
>dbj|AK071893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053K07, full insert sequence Length = 1792 Score = 135 bits (68), Expect = 2e-28 Identities = 194/236 (82%) Strand = Plus / Minus Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||||||||||||||||||||| ||||| || |||||||| || | || Sbjct: 1401 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 1342 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 526 |||||| ||||||| |||| ||||||||||||||||||||| |||| |||||| ||| Sbjct: 1341 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacctcatgtcttgttct 1282 Query: 527 aaacccaattggtcagcgattttctcctcagggcccaggaatcccatggcaaggagaaca 586 | ||||| | || ||| | || | || || |||||||||||||| || | ||| ||| Sbjct: 1281 agacccagcttgttagcaacagtcgcttcgggacccaggaatcccatagctaagaggaca 1222 Query: 587 aggtctgcctcgatgatctcttgtgatccttcaatctccttgaattggaaccttcc 642 || || ||||| || || |||| ||||||||||| |||||||||||||||||||| Sbjct: 1221 agatcggcctcaataatttcttctgatccttcaacttccttgaattggaaccttcc 1166
>dbj|AK070485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049P18, full insert sequence Length = 2257 Score = 135 bits (68), Expect = 2e-28 Identities = 194/236 (82%) Strand = Plus / Minus Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||||||||||||||||||||| ||||| || |||||||| || | || Sbjct: 1810 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 1751 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtctttctct 526 |||||| ||||||| |||| ||||||||||||||||||||| |||| |||||| ||| Sbjct: 1750 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacctcatgtcttgttct 1691 Query: 527 aaacccaattggtcagcgattttctcctcagggcccaggaatcccatggcaaggagaaca 586 | ||||| | || ||| | || | || || |||||||||||||| || | ||| ||| Sbjct: 1690 agacccagcttgttagcaacagtcgcttcgggacccaggaatcccatagctaagaggaca 1631 Query: 587 aggtctgcctcgatgatctcttgtgatccttcaatctccttgaattggaaccttcc 642 || || ||||| || || |||| ||||||||||| |||||||||||||||||||| Sbjct: 1630 agatcggcctcaataatttcttctgatccttcaacttccttgaattggaaccttcc 1575
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||||||||||||||||||||| ||||| || |||||||| || | || Sbjct: 11809 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 11750 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggacc 512 |||||| ||||||| |||| ||||||||||||||||||||| |||| Sbjct: 11749 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacc 11704 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 560 cccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtgatccttca 619 |||||||||||||| || | ||| ||||| || ||||| || || |||| |||||||||| Sbjct: 11536 cccaggaatcccatagctaagaggacaagatcggcctcaataatttcttctgatccttca 11477 Query: 620 atctccttgaattggaaccttcc 642 | |||||||||||||||||||| Sbjct: 11476 acttccttgaattggaaccttcc 11454
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 407 gtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaaaatgcca 466 |||||||||||||||||||||||||||||||| ||||| || |||||||| || | || Sbjct: 27415679 gtgatggcccaaacaaccagtgattgcccacgtctgcagtctccagcagcaaatacacct 27415620 Query: 467 tccacactggtcgcgaagtgtccaaattgagctttgaagttggacc 512 |||||| ||||||| |||| ||||||||||||||||||||| |||| Sbjct: 27415619 tccacattggtcgcaaagtttccaaattgagctttgaagtttgacc 27415574 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 560 cccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtgatccttca 619 |||||||||||||| || | ||| ||||| || ||||| || || |||| |||||||||| Sbjct: 27415406 cccaggaatcccatagctaagaggacaagatcggcctcaataatttcttctgatccttca 27415347 Query: 620 atctccttgaattggaaccttcc 642 | |||||||||||||||||||| Sbjct: 27415346 acttccttgaattggaaccttcc 27415324
>gb|AF051210.1|AF051210 Picea mariana probable NADH-glutamate synthase (Sb14) mRNA, partial cds Length = 1247 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Minus Query: 400 tccttcagtgatggcccaaacaaccagtgattgcccacgcctgcaatccccagcagcgaa 459 |||||||| |||||||||||||| ||||| || ||||| || || || |||||||| || Sbjct: 374 tccttcagcaatggcccaaacaacaagtgactgaccacgtctacagtcgccagcagcaaa 315 Query: 460 aatgccatccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtc 519 | ||||| |||||||| || || | ||||| | ||||||||||| || |||||||| Sbjct: 314 tacaccatcaacactggtagcaaaatcaccaaagttggctttgaagtttgaacggttgtc 255
>ref|NM_124725.2| Arabidopsis thaliana GLT1 AT5G53460 (GLT1) mRNA, complete cds Length = 6627 Score = 46.1 bits (23), Expect = 0.14 Identities = 71/87 (81%) Strand = Plus / Minus Query: 553 ctcagggcccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtga 612 |||||| || ||||| |||||||| | || ||| |||||||| || ||||| || | || Sbjct: 6363 ctcaggtccaaggaaacccatggccaagaaaacgaggtctgcttcaatgatttcctcaga 6304 Query: 613 tccttcaatctccttgaattggaacct 639 ||||| ||||||||||| |||||||| Sbjct: 6303 gccttcgatctccttgaactggaacct 6277
>gb|AY099795.1| Arabidopsis thaliana NADH-dependent glutamate synthase (At5g53460) mRNA, complete cds Length = 1389 Score = 46.1 bits (23), Expect = 0.14 Identities = 71/87 (81%) Strand = Plus / Minus Query: 553 ctcagggcccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtga 612 |||||| || ||||| |||||||| | || ||| |||||||| || ||||| || | || Sbjct: 770 ctcaggtccaaggaaacccatggccaagaaaacgaggtctgcttcaatgatttcctcaga 711 Query: 613 tccttcaatctccttgaattggaacct 639 ||||| ||||||||||| |||||||| Sbjct: 710 gccttcgatctccttgaactggaacct 684
>dbj|AK222185.1| Arabidopsis thaliana mRNA for NADH-dependent glutamate synthase, complete cds, clone: RAFL24-12-H17 Length = 1868 Score = 46.1 bits (23), Expect = 0.14 Identities = 71/87 (81%) Strand = Plus / Minus Query: 553 ctcagggcccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtga 612 |||||| || ||||| |||||||| | || ||| |||||||| || ||||| || | || Sbjct: 1190 ctcaggtccaaggaaacccatggccaagaaaacgaggtctgcttcaatgatttcctcaga 1131 Query: 613 tccttcaatctccttgaattggaacct 639 ||||| ||||||||||| |||||||| Sbjct: 1130 gccttcgatctccttgaactggaacct 1104
>emb|BX832353.1|CNS09ZNJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZD02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2076 Score = 46.1 bits (23), Expect = 0.14 Identities = 71/87 (81%) Strand = Plus / Minus Query: 553 ctcagggcccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtga 612 |||||| || ||||| |||||||| | || ||| |||||||| || ||||| || | || Sbjct: 1521 ctcaggtccaaggaaacccatggccaagaaaacgaggtctgcttcaatgatttcctcaga 1462 Query: 613 tccttcaatctccttgaattggaacct 639 ||||| ||||||||||| |||||||| Sbjct: 1461 gccttcgatctccttgaactggaacct 1435
>dbj|AB020754.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYN8 Length = 54528 Score = 46.1 bits (23), Expect = 0.14 Identities = 71/87 (81%) Strand = Plus / Minus Query: 553 ctcagggcccaggaatcccatggcaaggagaacaaggtctgcctcgatgatctcttgtga 612 |||||| || ||||| |||||||| | || ||| |||||||| || ||||| || | || Sbjct: 50036 ctcaggtccaaggaaacccatggccaagaaaacgaggtctgcttcaatgatttcctcaga 49977 Query: 613 tccttcaatctccttgaattggaacct 639 ||||| ||||||||||| |||||||| Sbjct: 49976 gccttcgatctccttgaactggaacct 49950
>gb|AC104453.2| Homo sapiens chromosome 1 clone RP4-672J20, complete sequence Length = 112662 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 177 tttctttccctattgagcccagcctt 202 ||||||||||||||| |||||||||| Sbjct: 5867 tttctttccctattgggcccagcctt 5892
>gb|AC005476.4|AC005476 Homo sapiens PAC clone RP1-261D10 from 14q24.3, complete sequence Length = 107731 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 100 agacaataaaccaacaaacaat 121 |||||||||||||||||||||| Sbjct: 32256 agacaataaaccaacaaacaat 32235
>gb|AC027691.13|AC027691 Homo sapiens chromosome 1 clone RP11-287O16, complete sequence Length = 175977 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 177 tttctttccctattgagcccagcctt 202 ||||||||||||||| |||||||||| Sbjct: 106982 tttctttccctattgggcccagcctt 107007
>ref|XM_322370.1| Neurospora crassa OR74A predicted protein (NCU00285.1) partial mRNA Length = 1635 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 cttgtcaaccgcggcagcagc 393 ||||||||||||||||||||| Sbjct: 255 cttgtcaaccgcggcagcagc 235
>ref|XM_952663.1| Neurospora crassa OR74A hypothetical protein (NCU00285.1) partial mRNA Length = 1635 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 cttgtcaaccgcggcagcagc 393 ||||||||||||||||||||| Sbjct: 255 cttgtcaaccgcggcagcagc 235
>emb|CR627491.15| Zebrafish DNA sequence from clone DKEY-163B6 in linkage group 8, complete sequence Length = 243757 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 84 tcaaaatattatagctagacaataaacca 112 ||||||||||||||||| |||| |||||| Sbjct: 164281 tcaaaatattatagctaaacaacaaacca 164309
>emb|AL449264.18| Human DNA sequence from clone RP11-485H8 on chromosome 1 Contains the 5' end of the CASQ2 gene for calsequestrin 2 (cardiac muscle), the NHLH2 gene for nescient helix loop helix 2, a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene and two CpG islands, complete sequence Length = 164655 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 agacaataaaccaacaaacaa 120 ||||||||||||||||||||| Sbjct: 131866 agacaataaaccaacaaacaa 131886
>emb|AL356419.10| Human DNA sequence from clone RP11-99L6 on chromosome 10, complete sequence Length = 126232 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 313 cagacctgcacccaaggcagtgatg 337 ||||||||| ||||||||||||||| Sbjct: 40180 cagacctgctcccaaggcagtgatg 40204
>gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's Hospital Oakland Research Institute) complete sequence Length = 226532 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 tctcttgtgatccttcaatct 623 ||||||||||||||||||||| Sbjct: 74733 tctcttgtgatccttcaatct 74713
>emb|CR847548.8| Zebrafish DNA sequence from clone DKEY-185L9 in linkage group 8, complete sequence Length = 249728 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 84 tcaaaatattatagctagacaataaacca 112 ||||||||||||||||| |||| |||||| Sbjct: 240399 tcaaaatattatagctaaacaacaaacca 240371
>gb|AC145297.3| Mus musculus BAC clone RP24-196O7 from chromosome 10, complete sequence Length = 172595 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 ggcaaggagaacaaggtctgc 594 ||||||||||||||||||||| Sbjct: 133446 ggcaaggagaacaaggtctgc 133466
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 acaaacaatagccaaccaaaa 133 ||||||||||||||||||||| Sbjct: 797348 acaaacaatagccaaccaaaa 797328 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 acaaacaatagccaaccaaaa 133 ||||||||||||||||||||| Sbjct: 608824 acaaacaatagccaaccaaaa 608804
>gb|AC005658.3|AC005658 citb_11_o_6, complete sequence Length = 72449 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 313 cagacctgcacccaaggcagtgatg 337 ||||||||| ||||||||||||||| Sbjct: 50883 cagacctgctcccaaggcagtgatg 50907
>gb|AC005659.3|AC005659 citb_161_g_12, complete sequence Length = 116058 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 cagacctgcacccaaggcagtgatg 337 ||||||||| ||||||||||||||| Sbjct: 72710 cagacctgctcccaaggcagtgatg 72686
>gb|L01660.1|ALFNADHSYN Medicago sativa NADH-glutamate synthase mRNA, comlete cds Length = 7174 Score = 42.1 bits (21), Expect = 2.2 Identities = 48/57 (84%) Strand = Plus / Minus Query: 464 ccatccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtct 520 ||||| |||||||||| |||| | ||| | | |||||||||||| |||| ||||||| Sbjct: 6616 ccatcaacactggtcgagaagcggccataatcagctttgaagtttgacctgttgtct 6560
>gb|L37606.1|ALFNDGS Medicago sativa (clone GG16-1) NADH-dependent glutamate synthase gene, complete cds Length = 14306 Score = 42.1 bits (21), Expect = 2.2 Identities = 48/57 (84%) Strand = Plus / Minus Query: 464 ccatccacactggtcgcgaagtgtccaaattgagctttgaagttggaccggttgtct 520 ||||| |||||||||| |||| | ||| | | |||||||||||| |||| ||||||| Sbjct: 13696 ccatcaacactggtcgagaagcggccataatcagctttgaagtttgacctgttgtct 13640
>gb|AE014851.1| Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence Length = 251762 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 caatagccaaccaaaatttt 137 |||||||||||||||||||| Sbjct: 11308 caatagccaaccaaaatttt 11289
>ref|XM_367262.1| Magnaporthe grisea 70-15 hypothetical protein (MG07187.4) partial mRNA Length = 6357 Score = 40.1 bits (20), Expect = 8.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 552 cctcagggcccaggaatcccatggcaaggagaacaaggtc 591 ||||||| |||||||| ||||| | ||| ||||||||||| Sbjct: 6076 cctcaggtcccaggaaacccatagaaagaagaacaaggtc 6037
>gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-298M8, complete sequence Length = 237142 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cctctctttctttccctatt 190 |||||||||||||||||||| Sbjct: 70192 cctctctttctttccctatt 70211
>gb|AC127251.4| Mus musculus BAC clone RP24-482M10 from chromosome 9, complete sequence Length = 185420 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 93 tatagctagacaataaaccaacaaacaa 120 ||||| |||||||||||| ||||||||| Sbjct: 165507 tatagttagacaataaacaaacaaacaa 165480
>emb|AM056054.1| Fusarium fujikuroi gltA gene for glutamate synthase, exons 1-3, strain IMI58289 Length = 8741 Score = 40.1 bits (20), Expect = 8.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 552 cctcagggcccaggaatcccatggcaaggagaacaaggtc 591 ||||||| || ||||| |||||||||||||| || ||||| Sbjct: 7466 cctcaggtccaaggaaacccatggcaaggaggacgaggtc 7427
>gb|AC127325.4| Mus musculus BAC clone RP23-250E15 from 9, complete sequence Length = 160846 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 tatagctagacaataaaccaacaaacaa 120 ||||| |||||||||||| ||||||||| Sbjct: 111655 tatagttagacaataaacaaacaaacaa 111682
>emb|AL357510.17| Human DNA sequence from clone RP11-195F21 on chromosome 10 Contains the 5' end of a novel gene, complete sequence Length = 121493 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 tctctttctttccctattga 192 |||||||||||||||||||| Sbjct: 38286 tctctttctttccctattga 38305
>emb|AL355492.9| Human DNA sequence from clone RP3-322A24 on chromosome 6 Contains part of a novel gene (FNDC2) and part of the FNDC1 gene for fibronectin type III domain containing 1, complete sequence Length = 51962 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cacgcctgcaatccccagca 454 |||||||||||||||||||| Sbjct: 40309 cacgcctgcaatccccagca 40290
>emb|AL139425.8| Human DNA sequence from clone RP4-788L13 on chromosome 1p21.1-21.3 Contains the 3' end of gene for plasticity related gene 1 (PRG), complete sequence Length = 68858 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cacgcctgcaatccccagca 454 |||||||||||||||||||| Sbjct: 37937 cacgcctgcaatccccagca 37918
>emb|AL021327.1|HS124O9 Human DNA sequence from clone RP1-124O9 on chromosome 6q21 Contains an HSJ2 (heat shock protein, DNAJ-like 2 (HDJ2)) pseudogene, complete sequence Length = 108534 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gcacccaaggcagtgatgcc 339 |||||||||||||||||||| Sbjct: 72396 gcacccaaggcagtgatgcc 72377
>gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154758 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cacgcctgcaatccccagca 454 |||||||||||||||||||| Sbjct: 7253 cacgcctgcaatccccagca 7272
>emb|BX914196.10| Zebrafish DNA sequence from clone DKEYP-71E8 in linkage group 7, complete sequence Length = 166715 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 caaaaatactgtacattatt 53 |||||||||||||||||||| Sbjct: 110976 caaaaatactgtacattatt 110995
>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174551 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aatactgtacattattcagg 57 |||||||||||||||||||| Sbjct: 100825 aatactgtacattattcagg 100806
>gb|AC103716.2| Homo sapiens chromosome 8, clone RP11-344I13, complete sequence Length = 180624 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cacgcctgcaatccccagca 454 |||||||||||||||||||| Sbjct: 170145 cacgcctgcaatccccagca 170164
>gb|AC104471.6| Homo sapiens 3 BAC RP11-80B17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160698 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cacgcctgcaatccccagca 454 |||||||||||||||||||| Sbjct: 138999 cacgcctgcaatccccagca 139018
>ref|NM_139778.2| Drosophila melanogaster CG10274-RA (CG10274), mRNA Length = 3040 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aatactgtacattattcagg 57 |||||||||||||||||||| Sbjct: 2841 aatactgtacattattcagg 2860
>gb|AY051740.1| Drosophila melanogaster LD26701 full length cDNA Length = 3062 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aatactgtacattattcagg 57 |||||||||||||||||||| Sbjct: 2842 aatactgtacattattcagg 2861
>emb|BX088592.12| Zebrafish DNA sequence from clone DKEYP-61C12 in linkage group 5, complete sequence Length = 99227 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 caataaaccaacaaacaata 122 |||||||||||||||||||| Sbjct: 6019 caataaaccaacaaacaata 6038
>gb|AC103953.8| Homo sapiens chromosome 8, clone CTD-2571K21, complete sequence Length = 216373 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cacgcctgcaatccccagca 454 |||||||||||||||||||| Sbjct: 90007 cacgcctgcaatccccagca 90026
>gb|AF003529.2| Homo sapiens glypican 3 (GPC3) gene, partial cds and flanking repeat regions Length = 165658 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 cacgcctgcaatccccagca 454 |||||||||||||||||||| Sbjct: 54364 cacgcctgcaatccccagca 54383
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 19 acaatnttgagcaaccaaaaata 41 ||||| ||||||||||||||||| Sbjct: 94537 acaatattgagcaaccaaaaata 94559
>emb|BX004832.9| Zebrafish DNA sequence from clone CH211-89M19, complete sequence Length = 190952 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ataaaccaacaaacaatagc 124 |||||||||||||||||||| Sbjct: 33665 ataaaccaacaaacaatagc 33646
>emb|AL928999.4| Zebrafish DNA sequence from clone CH211-227C6, complete sequence Length = 169570 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ataaaccaacaaacaatagc 124 |||||||||||||||||||| Sbjct: 131463 ataaaccaacaaacaatagc 131482
>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete sequence Length = 264966 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aatactgtacattattcagg 57 |||||||||||||||||||| Sbjct: 49405 aatactgtacattattcagg 49386
>gb|BT001896.1| Drosophila melanogaster SD19050 full insert cDNA Length = 4177 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aatactgtacattattcagg 57 |||||||||||||||||||| Sbjct: 4094 aatactgtacattattcagg 4075
>gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s DS01986 (D261), DS01814 (D252), and DS08881 (D260)), complete sequence Length = 196672 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aatactgtacattattcagg 57 |||||||||||||||||||| Sbjct: 139729 aatactgtacattattcagg 139748 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,300,565 Number of Sequences: 3902068 Number of extensions: 6300565 Number of successful extensions: 133086 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132831 Number of HSP's gapped (non-prelim): 253 length of query: 650 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 627 effective length of database: 17,143,297,704 effective search space: 10748847660408 effective search space used: 10748847660408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)