| Clone Name | rbags30i04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 456 bits (230), Expect = e-125 Identities = 389/442 (88%) Strand = Plus / Minus Query: 60 atcagacttcgaggttaacggagggcatctccaactcggaggtgatctccgcgatctgct 119 ||||||| |||||| | || | ||||||||| |||||||||||||||||| ||||||||| Sbjct: 31546205 atcagacgtcgagggttactgcgggcatctcgaactcggaggtgatctcctcgatctgct 31546146 Query: 120 tgcggacgctcatgtcgatgaagttggagctgtcgcggccgtactgcacggtgaatccgg 179 | ||||||||||||||||||| | |||| | ||||||||||||||| | |||||| |||| Sbjct: 31546145 tccggacgctcatgtcgatgaggctggacccgtcgcggccgtactggatggtgaagccgg 31546086 Query: 180 cgatgagctccgggtcgaggcgggtcttgatccggacgttggcggcgccggtgatgttct 239 |||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||| Sbjct: 31546085 cgatgagctccgggtcgatgcgggtcttgacccggacgttcttcgcgccggtgagattct 31546026 Query: 240 gcacgtgcgtggcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacga 299 |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31546025 gcacctgctgcgcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgg 31545966 Query: 300 cggcctcctcggtgccggtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcg 359 |||| |||||||||||||||||| |||| ||||| |||||||||| ||||||||||||| Sbjct: 31545965 tggccacctcggtgccggtgagcgagttgaaggcgttctcgaactcccgcacgatctgcg 31545906 Query: 360 gcatcaggctcgcgcgggtgttgtcgatgacgacgttgaggaagttgacggtgtgcggct 419 ||| |||| ||||||| |||||| | ||||||||||||||||||||| ||||| || Sbjct: 31545905 tcatgaggcccgcgcggccgttgtccaccacgacgttgaggaagttgacgacgtgcgcct 31545846 Query: 420 gcagctccgacgacttggcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacgg 479 | ||||||||||||||||||||||||||||||||| | |||||| ||||||||||| | Sbjct: 31545845 ggagctccgacgacttggcgatctcgtcgatgagctgggccttctcgtcgcgcggcaccg 31545786 Query: 480 tggggttgtcgaagaactcggc 501 | |||||||||||||||||||| Sbjct: 31545785 tcgggttgtcgaagaactcggc 31545764
>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0431B06 Length = 154796 Score = 456 bits (230), Expect = e-125 Identities = 389/442 (88%) Strand = Plus / Minus Query: 60 atcagacttcgaggttaacggagggcatctccaactcggaggtgatctccgcgatctgct 119 ||||||| |||||| | || | ||||||||| |||||||||||||||||| ||||||||| Sbjct: 36765 atcagacgtcgagggttactgcgggcatctcgaactcggaggtgatctcctcgatctgct 36706 Query: 120 tgcggacgctcatgtcgatgaagttggagctgtcgcggccgtactgcacggtgaatccgg 179 | ||||||||||||||||||| | |||| | ||||||||||||||| | |||||| |||| Sbjct: 36705 tccggacgctcatgtcgatgaggctggacccgtcgcggccgtactggatggtgaagccgg 36646 Query: 180 cgatgagctccgggtcgaggcgggtcttgatccggacgttggcggcgccggtgatgttct 239 |||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||| Sbjct: 36645 cgatgagctccgggtcgatgcgggtcttgacccggacgttcttcgcgccggtgagattct 36586 Query: 240 gcacgtgcgtggcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacga 299 |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36585 gcacctgctgcgcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgg 36526 Query: 300 cggcctcctcggtgccggtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcg 359 |||| |||||||||||||||||| |||| ||||| |||||||||| ||||||||||||| Sbjct: 36525 tggccacctcggtgccggtgagcgagttgaaggcgttctcgaactcccgcacgatctgcg 36466 Query: 360 gcatcaggctcgcgcgggtgttgtcgatgacgacgttgaggaagttgacggtgtgcggct 419 ||| |||| ||||||| |||||| | ||||||||||||||||||||| ||||| || Sbjct: 36465 tcatgaggcccgcgcggccgttgtccaccacgacgttgaggaagttgacgacgtgcgcct 36406 Query: 420 gcagctccgacgacttggcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacgg 479 | ||||||||||||||||||||||||||||||||| | |||||| ||||||||||| | Sbjct: 36405 ggagctccgacgacttggcgatctcgtcgatgagctgggccttctcgtcgcgcggcaccg 36346 Query: 480 tggggttgtcgaagaactcggc 501 | |||||||||||||||||||| Sbjct: 36345 tcgggttgtcgaagaactcggc 36324
>ref|XM_467812.1| Oryza sativa (japonica cultivar-group), mRNA Length = 732 Score = 454 bits (229), Expect = e-124 Identities = 388/441 (87%) Strand = Plus / Minus Query: 61 tcagacttcgaggttaacggagggcatctccaactcggaggtgatctccgcgatctgctt 120 |||||| |||||| | || | ||||||||| |||||||||||||||||| |||||||||| Sbjct: 732 tcagacgtcgagggttactgcgggcatctcgaactcggaggtgatctcctcgatctgctt 673 Query: 121 gcggacgctcatgtcgatgaagttggagctgtcgcggccgtactgcacggtgaatccggc 180 ||||||||||||||||||| | |||| | ||||||||||||||| | |||||| ||||| Sbjct: 672 ccggacgctcatgtcgatgaggctggacccgtcgcggccgtactggatggtgaagccggc 613 Query: 181 gatgagctccgggtcgaggcgggtcttgatccggacgttggcggcgccggtgatgttctg 240 ||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||| Sbjct: 612 gatgagctccgggtcgatgcgggtcttgacccggacgttcttcgcgccggtgagattctg 553 Query: 241 cacgtgcgtggcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgac 300 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 cacctgctgcgcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacggt 493 Query: 301 ggcctcctcggtgccggtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcgg 360 |||| |||||||||||||||||| |||| ||||| |||||||||| ||||||||||||| Sbjct: 492 ggccacctcggtgccggtgagcgagttgaaggcgttctcgaactcccgcacgatctgcgt 433 Query: 361 catcaggctcgcgcgggtgttgtcgatgacgacgttgaggaagttgacggtgtgcggctg 420 ||| |||| ||||||| |||||| | ||||||||||||||||||||| ||||| ||| Sbjct: 432 catgaggcccgcgcggccgttgtccaccacgacgttgaggaagttgacgacgtgcgcctg 373 Query: 421 cagctccgacgacttggcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacggt 480 ||||||||||||||||||||||||||||||||| | |||||| ||||||||||| || Sbjct: 372 gagctccgacgacttggcgatctcgtcgatgagctgggccttctcgtcgcgcggcaccgt 313 Query: 481 ggggttgtcgaagaactcggc 501 |||||||||||||||||||| Sbjct: 312 cgggttgtcgaagaactcggc 292
>emb|X66005.1|ZMATPD Z.mays mRNA for ATPase (delta subunit) Length = 765 Score = 430 bits (217), Expect = e-117 Identities = 373/425 (87%) Strand = Plus / Minus Query: 77 acggagggcatctccaactcggaggtgatctccgcgatctgcttgcggacgctcatgtcg 136 |||| ||||| ||| |||||||| | ||||||| |||||||||| ||||||||||||||| Sbjct: 542 acggcgggcaactcgaactcggacgcgatctcctcgatctgcttccggacgctcatgtcg 483 Query: 137 atgaagttggagctgtcgcggccgtactgcacggtgaatccggcgatgagctccgggtcg 196 || |||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| Sbjct: 482 atcaagttggagccgtcgcggccgtactgcacggtgaagccggcgatgagcgccgggtcg 423 Query: 197 aggcgggtcttgatccggacgttggcggcgccggtgatgttctgcacgtgcgtggcgatc 256 || | ||||||| |||||||| ||||||||| || ||||| |||||| |||||| Sbjct: 422 agctgcgtcttgaggcggacgttcttggcgccggtcatcttctggacgtgctgcgcgatc 363 Query: 257 tgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgacggcctcctcggtgccg 316 |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 362 tgcgcgaggtcctgcgactcgagctgcacgacggaggtgacggtggcgacctcggtgccc 303 Query: 317 gtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcggcatcaggctcgcgcgg 376 ||||||| ||||||| || ||||||||||| ||||||||||||| | | ||||||| Sbjct: 302 gtgagcgagttgtagacgttctcgaactcgacgacgatctgcggcacgatggacgcgcgg 243 Query: 377 gtgttgtcgatgacgacgttgaggaagttgacggtgtgcggctgcagctccgacgacttg 436 |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct: 242 aagttgtcgacgacgacgttgaggaagttgacgacgtgcggctgcagctcggacgacttg 183 Query: 437 gcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacggtggggttgtcgaagaac 496 ||||||||| |||||||| | | ||||||||||||||| ||||||||||||||||||||| Sbjct: 182 gcgatctcgccgatgagctcggccttctcctcgcgcgggacggtggggttgtcgaagaac 123 Query: 497 tcggc 501 ||||| Sbjct: 122 tcggc 118
>gb|AY104482.1| Zea mays PCO083430 mRNA sequence Length = 800 Score = 430 bits (217), Expect = e-117 Identities = 373/425 (87%) Strand = Plus / Minus Query: 77 acggagggcatctccaactcggaggtgatctccgcgatctgcttgcggacgctcatgtcg 136 |||| ||||| ||| |||||||| | ||||||| |||||||||| ||||||||||||||| Sbjct: 605 acggcgggcaactcgaactcggacgcgatctcctcgatctgcttccggacgctcatgtcg 546 Query: 137 atgaagttggagctgtcgcggccgtactgcacggtgaatccggcgatgagctccgggtcg 196 || ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 545 attaagctggagccgtcgcggccgtactgcacggtgaagccggcgatgagctccgggtcg 486 Query: 197 aggcgggtcttgatccggacgttggcggcgccggtgatgttctgcacgtgcgtggcgatc 256 || | |||||||| |||||||| ||||||||| || ||||| |||||| |||||| Sbjct: 485 agctgcgtcttgatgcggacgttctgggcgccggtcatcttctggacgtgctgcgcgatc 426 Query: 257 tgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgacggcctcctcggtgccg 316 ||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct: 425 tgcgccaggtcctgcgactcgagctgcacgacggaggtgacggtggcgacctcggtgccc 366 Query: 317 gtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcggcatcaggctcgcgcgg 376 ||||||| ||||||| || ||||||||||| ||||||||||||| | | ||||||| Sbjct: 365 gtgagcgagttgtagacgttctcgaactcggcgacgatctgcggcacgatggccgcgcgg 306 Query: 377 gtgttgtcgatgacgacgttgaggaagttgacggtgtgcggctgcagctccgacgacttg 436 |||||||| |||||||||||||||||||||| ||||||||||||||| |||||| || Sbjct: 305 aagttgtcgacgacgacgttgaggaagttgacgacgtgcggctgcagctcggacgacctg 246 Query: 437 gcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacggtggggttgtcgaagaac 496 |||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||| Sbjct: 245 gcgatctcgtcgatgagctcggccttctcctcgcgcgggacggtggggttgtcgaagaac 186 Query: 497 tcggc 501 ||||| Sbjct: 185 tcggc 181
>emb|X66004.1|SBATPD S.bicolor mRNA for ATPase (delta subunit) Length = 1105 Score = 404 bits (204), Expect = e-109 Identities = 366/420 (87%) Strand = Plus / Minus Query: 82 gggcatctccaactcggaggtgatctccgcgatctgcttgcggacgctcatgtcgatgaa 141 ||||| ||| |||||||| ||||| ||| |||||||||| ||||||||||||||||| || Sbjct: 777 gggcaactcgaactcggacgtgatttcctcgatctgcttccggacgctcatgtcgattaa 718 Query: 142 gttggagctgtcgcggccgtactgcacggtgaatccggcgatgagctccgggtcgaggcg 201 | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct: 717 gctggagccgtcgcggccgtactgcacggtgaagccggcgatgagctccgggtcgagctg 658 Query: 202 ggtcttgatccggacgttggcggcgccggtgatgttctgcacgtgcgtggcgatctgcgc 261 ||||||| |||||||| ||||||||| || ||||| |||||| ||||||||||| Sbjct: 657 tgtcttgaggcggacgttcttggcgccggtcatcttctggacgtgctgcgcgatctgcgc 598 Query: 262 gaggtcctgcgactcgagctgcacgacggaggtgacgacggcctcctcggtgccggtgag 321 ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| Sbjct: 597 gaggtcctgcgactcgagctgcacgacggaggtgacggtggcgacctcggtgcccgtgag 538 Query: 322 cgcgttgtaggcggtctcgaactcgcgcacgatctgcggcatcaggctcgcgcgggtgtt 381 || |||| || | ||||||||||| ||||||| ||||| | |||||||| ||| Sbjct: 537 cgagttgaagatgttctcgaactcgacgacgatctccggcaagatcgtcgcgcggaagtt 478 Query: 382 gtcgatgacgacgttgaggaagttgacggtgtgcggctgcagctccgacgacttggcgat 441 ||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||| Sbjct: 477 gtcgacgacgacgttgatgaagttgacgacgtgcggctgcagctcgtacgacttggcgat 418 Query: 442 ctcgtcgatgagcgccgtcttctcctcgcgcggcacggtggggttgtcgaagaactcggc 501 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 417 ctcgtcgatgagcgcggtcttctcctcgcgcgggacggtgggattgtcgaagaactcggc 358
>gb|AE005107.1| Halobacterium sp. NRC-1 section 138 of 170 of the complete genome Length = 13368 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 436 ggcgatctcgtcgatgagcgccgt 459 |||||||||||||||||||||||| Sbjct: 6660 ggcgatctcgtcgatgagcgccgt 6683
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24, complete sequence Length = 137721 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 275 tcgagctgcacgacggaggtgacgacg 301 ||||||||||||||| ||||||||||| Sbjct: 79334 tcgagctgcacgacgtaggtgacgacg 79308
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 tcgagctgcacgacggaggtgacgacg 301 ||||||||||||||| ||||||||||| Sbjct: 7737621 tcgagctgcacgacgtaggtgacgacg 7737647
>dbj|AK063483.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B12, full insert sequence Length = 1269 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 275 tcgagctgcacgacggaggtgacgacg 301 ||||||||||||||| ||||||||||| Sbjct: 882 tcgagctgcacgacgtaggtgacgacg 856
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 tcgagctgcacgacggaggtgacgacg 301 ||||||||||||||| ||||||||||| Sbjct: 7807708 tcgagctgcacgacgtaggtgacgacg 7807734
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.50 Identities = 31/34 (91%) Strand = Plus / Minus Query: 436 ggcgatctcgtcgatgagcgccgtcttctcctcg 469 |||||| || ||||||||||||||| |||||||| Sbjct: 1760259 ggcgatgtcatcgatgagcgccgtcgtctcctcg 1760226
>gb|U78047.1|ASU78047 Alcaligenes sp. pha synthase (phaC) gene, complete cds Length = 1799 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 cggcgccggtgatgttctgcac 243 |||||||||||||||||||||| Sbjct: 966 cggcgccggtgatgttctgcac 945
>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds, stain:IL144 Length = 58996 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 331 ggcggtctcgaactcgcgcacg 352 |||||||||||||||||||||| Sbjct: 14963 ggcggtctcgaactcgcgcacg 14942
>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster, partial sequence Length = 24637 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 gcggtctcgaactcgcgcacg 352 ||||||||||||||||||||| Sbjct: 5609 gcggtctcgaactcgcgcacg 5589
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 tcgaactcgcgcacgatctgc 358 ||||||||||||||||||||| Sbjct: 2869874 tcgaactcgcgcacgatctgc 2869894
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 tcgaactcgcgcacgatctgc 358 ||||||||||||||||||||| Sbjct: 238610 tcgaactcgcgcacgatctgc 238590
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 gtgatctccgcgatctgcttg 121 ||||||||||||||||||||| Sbjct: 5548668 gtgatctccgcgatctgcttg 5548688
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 tcgaactcgcgcacgatctgc 358 ||||||||||||||||||||| Sbjct: 15830 tcgaactcgcgcacgatctgc 15810
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 cgacggcctcctcggtgccgg 317 ||||||||||||||||||||| Sbjct: 159449 cgacggcctcctcggtgccgg 159469
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 cgcacgatctgcggcatcagg 367 ||||||||||||||||||||| Sbjct: 4931676 cgcacgatctgcggcatcagg 4931696
>gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b DbhB (dbhB), general secretory pathway protein D (gspD), general secretory pathway protein E (gspE), general secretory pathway protein F (gspF), GspC (gspC), general secretory pathway protein G (gspG), general secretory pathway protein H (gspH), general secretory pathway protein I (gspI), general secretory pathway protein J (gspJ), general secretory pathway protein K (gspK), general secretory pathway protein L (gspL), general secretory pathway protein M (gspM), and general secretory pathway protein N (gspN) genes, complete cds; and unknown genes Length = 20302 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 tcgaactcgcgcacgatctgc 358 ||||||||||||||||||||| Sbjct: 11042 tcgaactcgcgcacgatctgc 11022
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 tcgaactcgcgcacgatctgc 358 ||||||||||||||||||||| Sbjct: 15763 tcgaactcgcgcacgatctgc 15743
>ref|XM_482275.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2499 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 409 ggtgtgcggctgcagctccgacga 432 ||||| |||||||||||||||||| Sbjct: 2451 ggtgttcggctgcagctccgacga 2474
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 gacttggcgatctcgtcgat 450 |||||||||||||||||||| Sbjct: 31049 gacttggcgatctcgtcgat 31068
>emb|AL611933.30| Human DNA sequence from clone RP11-374C13 on chromosome 1 Contains a eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) (EEF1D) pseudogene, complete sequence Length = 141273 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 agagacggcagaaaaaagaggacc 54 ||||| |||||||||||||||||| Sbjct: 141182 agagaaggcagaaaaaagaggacc 141205
>emb|AL591916.8| Human DNA sequence from clone RP11-168B8 on chromosome 1 Contains the 5' end of a novel gene (FLJ36179), complete sequence Length = 159159 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 agagacggcagaaaaaagaggacc 54 ||||| |||||||||||||||||| Sbjct: 1909 agagaaggcagaaaaaagaggacc 1932
>emb|AJ130774.1|LDI130774 Laminaria digitata mRNA for phosphoglycerate kinase, partial Length = 1776 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ctcggaggtgatctccgcga 113 |||||||||||||||||||| Sbjct: 920 ctcggaggtgatctccgcga 901
>dbj|AB168295.1| Macaca fascicularis testis cDNA clone: QtsA-11046, similar to human transcription factor A, mitochondrial (TFAM), mRNA, RefSeq: NM_003201.1 Length = 2489 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 ggcagaaaaaagaggacctaagca 60 |||||||||||||||| ||||||| Sbjct: 1199 ggcagaaaaaagaggagctaagca 1176
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 ggtgtgcggctgcagctccgacga 432 ||||| |||||||||||||||||| Sbjct: 19166331 ggtgttcggctgcagctccgacga 19166308
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 cctcggtgccggtgagcgcg 325 |||||||||||||||||||| Sbjct: 1247447 cctcggtgccggtgagcgcg 1247428
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 ggtgtgcggctgcagctccgacga 432 ||||| |||||||||||||||||| Sbjct: 88696 ggtgttcggctgcagctccgacga 88673
>gb|U40816.1|DAU40816 Diplomonad ATCC50380 glyceraldehyde-3-phosphate dehydrogenase gene, partial cds Length = 891 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 288 cggaggtgacgacggcctcctcggtgccggtgagcgcgtt 327 |||||| |||||||||||| |||||| ||||||| |||| Sbjct: 808 cggaggagacgacggcctcttcggtgtaggtgagcacgtt 769
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tctcgtcgatgagcgccgtc 460 |||||||||||||||||||| Sbjct: 6863 tctcgtcgatgagcgccgtc 6844 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,786,667 Number of Sequences: 3902068 Number of extensions: 2786667 Number of successful extensions: 53570 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52346 Number of HSP's gapped (non-prelim): 1218 length of query: 579 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 556 effective length of database: 17,143,297,704 effective search space: 9531673523424 effective search space used: 9531673523424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)