ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30i04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 456 e-125
2dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic D... 456 e-125
3ref|XM_467812.1| Oryza sativa (japonica cultivar-group), mRNA 454 e-124
4emb|X66005.1|ZMATPD Z.mays mRNA for ATPase (delta subunit) 430 e-117
5gb|AY104482.1| Zea mays PCO083430 mRNA sequence 430 e-117
6emb|X66004.1|SBATPD S.bicolor mRNA for ATPase (delta subunit) 404 e-109
7gb|AE005107.1| Halobacterium sp. NRC-1 section 138 of 170 of the... 48 0.032
8gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
10dbj|AK063483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
12emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 44 0.50
13gb|U78047.1|ASU78047 Alcaligenes sp. pha synthase (phaC) gene, c... 44 0.50
14dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene clust... 44 0.50
15gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg... 42 2.0
16gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 2.0
17gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 2.0
18gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 42 2.0
19emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 2.0
20emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 42 2.0
21gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 2.0
22gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b Db... 42 2.0
23gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 2.0
24ref|XM_482275.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.9
25gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ... 40 7.9
26emb|AL611933.30| Human DNA sequence from clone RP11-374C13 on ch... 40 7.9
27emb|AL591916.8| Human DNA sequence from clone RP11-168B8 on chro... 40 7.9
28emb|AJ130774.1|LDI130774 Laminaria digitata mRNA for phosphoglyc... 40 7.9
29dbj|AB168295.1| Macaca fascicularis testis cDNA clone: QtsA-1104... 40 7.9
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
31dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.9
32dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
33gb|U40816.1|DAU40816 Diplomonad ATCC50380 glyceraldehyde-3-phosp... 40 7.9
34gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 7.9

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  456 bits (230), Expect = e-125
 Identities = 389/442 (88%)
 Strand = Plus / Minus

                                                                            
Query: 60       atcagacttcgaggttaacggagggcatctccaactcggaggtgatctccgcgatctgct 119
                ||||||| |||||| | || | ||||||||| |||||||||||||||||| |||||||||
Sbjct: 31546205 atcagacgtcgagggttactgcgggcatctcgaactcggaggtgatctcctcgatctgct 31546146

                                                                            
Query: 120      tgcggacgctcatgtcgatgaagttggagctgtcgcggccgtactgcacggtgaatccgg 179
                | ||||||||||||||||||| | |||| | ||||||||||||||| | |||||| ||||
Sbjct: 31546145 tccggacgctcatgtcgatgaggctggacccgtcgcggccgtactggatggtgaagccgg 31546086

                                                                            
Query: 180      cgatgagctccgggtcgaggcgggtcttgatccggacgttggcggcgccggtgatgttct 239
                |||||||||||||||||| ||||||||||| |||||||||    ||||||||||  ||||
Sbjct: 31546085 cgatgagctccgggtcgatgcgggtcttgacccggacgttcttcgcgccggtgagattct 31546026

                                                                            
Query: 240      gcacgtgcgtggcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacga 299
                |||| |||   |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 31546025 gcacctgctgcgcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgg 31545966

                                                                            
Query: 300      cggcctcctcggtgccggtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcg 359
                 |||| |||||||||||||||||| |||| ||||| |||||||||| |||||||||||||
Sbjct: 31545965 tggccacctcggtgccggtgagcgagttgaaggcgttctcgaactcccgcacgatctgcg 31545906

                                                                            
Query: 360      gcatcaggctcgcgcgggtgttgtcgatgacgacgttgaggaagttgacggtgtgcggct 419
                 ||| |||| |||||||  |||||| |  |||||||||||||||||||||  ||||| ||
Sbjct: 31545905 tcatgaggcccgcgcggccgttgtccaccacgacgttgaggaagttgacgacgtgcgcct 31545846

                                                                            
Query: 420      gcagctccgacgacttggcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacgg 479
                | |||||||||||||||||||||||||||||||||   | |||||| ||||||||||| |
Sbjct: 31545845 ggagctccgacgacttggcgatctcgtcgatgagctgggccttctcgtcgcgcggcaccg 31545786

                                      
Query: 480      tggggttgtcgaagaactcggc 501
                | ||||||||||||||||||||
Sbjct: 31545785 tcgggttgtcgaagaactcggc 31545764



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>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0431B06
          Length = 154796

 Score =  456 bits (230), Expect = e-125
 Identities = 389/442 (88%)
 Strand = Plus / Minus

                                                                         
Query: 60    atcagacttcgaggttaacggagggcatctccaactcggaggtgatctccgcgatctgct 119
             ||||||| |||||| | || | ||||||||| |||||||||||||||||| |||||||||
Sbjct: 36765 atcagacgtcgagggttactgcgggcatctcgaactcggaggtgatctcctcgatctgct 36706

                                                                         
Query: 120   tgcggacgctcatgtcgatgaagttggagctgtcgcggccgtactgcacggtgaatccgg 179
             | ||||||||||||||||||| | |||| | ||||||||||||||| | |||||| ||||
Sbjct: 36705 tccggacgctcatgtcgatgaggctggacccgtcgcggccgtactggatggtgaagccgg 36646

                                                                         
Query: 180   cgatgagctccgggtcgaggcgggtcttgatccggacgttggcggcgccggtgatgttct 239
             |||||||||||||||||| ||||||||||| |||||||||    ||||||||||  ||||
Sbjct: 36645 cgatgagctccgggtcgatgcgggtcttgacccggacgttcttcgcgccggtgagattct 36586

                                                                         
Query: 240   gcacgtgcgtggcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacga 299
             |||| |||   |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 36585 gcacctgctgcgcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgg 36526

                                                                         
Query: 300   cggcctcctcggtgccggtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcg 359
              |||| |||||||||||||||||| |||| ||||| |||||||||| |||||||||||||
Sbjct: 36525 tggccacctcggtgccggtgagcgagttgaaggcgttctcgaactcccgcacgatctgcg 36466

                                                                         
Query: 360   gcatcaggctcgcgcgggtgttgtcgatgacgacgttgaggaagttgacggtgtgcggct 419
              ||| |||| |||||||  |||||| |  |||||||||||||||||||||  ||||| ||
Sbjct: 36465 tcatgaggcccgcgcggccgttgtccaccacgacgttgaggaagttgacgacgtgcgcct 36406

                                                                         
Query: 420   gcagctccgacgacttggcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacgg 479
             | |||||||||||||||||||||||||||||||||   | |||||| ||||||||||| |
Sbjct: 36405 ggagctccgacgacttggcgatctcgtcgatgagctgggccttctcgtcgcgcggcaccg 36346

                                   
Query: 480   tggggttgtcgaagaactcggc 501
             | ||||||||||||||||||||
Sbjct: 36345 tcgggttgtcgaagaactcggc 36324



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>ref|XM_467812.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 732

 Score =  454 bits (229), Expect = e-124
 Identities = 388/441 (87%)
 Strand = Plus / Minus

                                                                       
Query: 61  tcagacttcgaggttaacggagggcatctccaactcggaggtgatctccgcgatctgctt 120
           |||||| |||||| | || | ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 732 tcagacgtcgagggttactgcgggcatctcgaactcggaggtgatctcctcgatctgctt 673

                                                                       
Query: 121 gcggacgctcatgtcgatgaagttggagctgtcgcggccgtactgcacggtgaatccggc 180
            ||||||||||||||||||| | |||| | ||||||||||||||| | |||||| |||||
Sbjct: 672 ccggacgctcatgtcgatgaggctggacccgtcgcggccgtactggatggtgaagccggc 613

                                                                       
Query: 181 gatgagctccgggtcgaggcgggtcttgatccggacgttggcggcgccggtgatgttctg 240
           ||||||||||||||||| ||||||||||| |||||||||    ||||||||||  |||||
Sbjct: 612 gatgagctccgggtcgatgcgggtcttgacccggacgttcttcgcgccggtgagattctg 553

                                                                       
Query: 241 cacgtgcgtggcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgac 300
           ||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 552 cacctgctgcgcgatctgcgcgaggtcctgcgactcgagctgcacgacggaggtgacggt 493

                                                                       
Query: 301 ggcctcctcggtgccggtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcgg 360
           |||| |||||||||||||||||| |||| ||||| |||||||||| ||||||||||||| 
Sbjct: 492 ggccacctcggtgccggtgagcgagttgaaggcgttctcgaactcccgcacgatctgcgt 433

                                                                       
Query: 361 catcaggctcgcgcgggtgttgtcgatgacgacgttgaggaagttgacggtgtgcggctg 420
           ||| |||| |||||||  |||||| |  |||||||||||||||||||||  ||||| |||
Sbjct: 432 catgaggcccgcgcggccgttgtccaccacgacgttgaggaagttgacgacgtgcgcctg 373

                                                                       
Query: 421 cagctccgacgacttggcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacggt 480
            |||||||||||||||||||||||||||||||||   | |||||| ||||||||||| ||
Sbjct: 372 gagctccgacgacttggcgatctcgtcgatgagctgggccttctcgtcgcgcggcaccgt 313

                                
Query: 481 ggggttgtcgaagaactcggc 501
            ||||||||||||||||||||
Sbjct: 312 cgggttgtcgaagaactcggc 292



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>emb|X66005.1|ZMATPD Z.mays mRNA for ATPase (delta subunit)
          Length = 765

 Score =  430 bits (217), Expect = e-117
 Identities = 373/425 (87%)
 Strand = Plus / Minus

                                                                       
Query: 77  acggagggcatctccaactcggaggtgatctccgcgatctgcttgcggacgctcatgtcg 136
           |||| ||||| ||| |||||||| | ||||||| |||||||||| |||||||||||||||
Sbjct: 542 acggcgggcaactcgaactcggacgcgatctcctcgatctgcttccggacgctcatgtcg 483

                                                                       
Query: 137 atgaagttggagctgtcgcggccgtactgcacggtgaatccggcgatgagctccgggtcg 196
           || |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 482 atcaagttggagccgtcgcggccgtactgcacggtgaagccggcgatgagcgccgggtcg 423

                                                                       
Query: 197 aggcgggtcttgatccggacgttggcggcgccggtgatgttctgcacgtgcgtggcgatc 256
           ||  | |||||||  ||||||||   ||||||||| || ||||| ||||||   ||||||
Sbjct: 422 agctgcgtcttgaggcggacgttcttggcgccggtcatcttctggacgtgctgcgcgatc 363

                                                                       
Query: 257 tgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgacggcctcctcggtgccg 316
           ||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||| 
Sbjct: 362 tgcgcgaggtcctgcgactcgagctgcacgacggaggtgacggtggcgacctcggtgccc 303

                                                                       
Query: 317 gtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcggcatcaggctcgcgcgg 376
           ||||||| ||||||| || |||||||||||   |||||||||||||  | |  |||||||
Sbjct: 302 gtgagcgagttgtagacgttctcgaactcgacgacgatctgcggcacgatggacgcgcgg 243

                                                                       
Query: 377 gtgttgtcgatgacgacgttgaggaagttgacggtgtgcggctgcagctccgacgacttg 436
             |||||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||
Sbjct: 242 aagttgtcgacgacgacgttgaggaagttgacgacgtgcggctgcagctcggacgacttg 183

                                                                       
Query: 437 gcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacggtggggttgtcgaagaac 496
           ||||||||| |||||||| | | ||||||||||||||| |||||||||||||||||||||
Sbjct: 182 gcgatctcgccgatgagctcggccttctcctcgcgcgggacggtggggttgtcgaagaac 123

                
Query: 497 tcggc 501
           |||||
Sbjct: 122 tcggc 118



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>gb|AY104482.1| Zea mays PCO083430 mRNA sequence
          Length = 800

 Score =  430 bits (217), Expect = e-117
 Identities = 373/425 (87%)
 Strand = Plus / Minus

                                                                       
Query: 77  acggagggcatctccaactcggaggtgatctccgcgatctgcttgcggacgctcatgtcg 136
           |||| ||||| ||| |||||||| | ||||||| |||||||||| |||||||||||||||
Sbjct: 605 acggcgggcaactcgaactcggacgcgatctcctcgatctgcttccggacgctcatgtcg 546

                                                                       
Query: 137 atgaagttggagctgtcgcggccgtactgcacggtgaatccggcgatgagctccgggtcg 196
           || ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 545 attaagctggagccgtcgcggccgtactgcacggtgaagccggcgatgagctccgggtcg 486

                                                                       
Query: 197 aggcgggtcttgatccggacgttggcggcgccggtgatgttctgcacgtgcgtggcgatc 256
           ||  | |||||||| ||||||||   ||||||||| || ||||| ||||||   ||||||
Sbjct: 485 agctgcgtcttgatgcggacgttctgggcgccggtcatcttctggacgtgctgcgcgatc 426

                                                                       
Query: 257 tgcgcgaggtcctgcgactcgagctgcacgacggaggtgacgacggcctcctcggtgccg 316
           ||||| ||||||||||||||||||||||||||||||||||||  |||  |||||||||| 
Sbjct: 425 tgcgccaggtcctgcgactcgagctgcacgacggaggtgacggtggcgacctcggtgccc 366

                                                                       
Query: 317 gtgagcgcgttgtaggcggtctcgaactcgcgcacgatctgcggcatcaggctcgcgcgg 376
           ||||||| ||||||| || |||||||||||   |||||||||||||  | |  |||||||
Sbjct: 365 gtgagcgagttgtagacgttctcgaactcggcgacgatctgcggcacgatggccgcgcgg 306

                                                                       
Query: 377 gtgttgtcgatgacgacgttgaggaagttgacggtgtgcggctgcagctccgacgacttg 436
             |||||||| ||||||||||||||||||||||  ||||||||||||||| |||||| ||
Sbjct: 305 aagttgtcgacgacgacgttgaggaagttgacgacgtgcggctgcagctcggacgacctg 246

                                                                       
Query: 437 gcgatctcgtcgatgagcgccgtcttctcctcgcgcggcacggtggggttgtcgaagaac 496
           |||||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||
Sbjct: 245 gcgatctcgtcgatgagctcggccttctcctcgcgcgggacggtggggttgtcgaagaac 186

                
Query: 497 tcggc 501
           |||||
Sbjct: 185 tcggc 181



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>emb|X66004.1|SBATPD S.bicolor mRNA for ATPase (delta subunit)
          Length = 1105

 Score =  404 bits (204), Expect = e-109
 Identities = 366/420 (87%)
 Strand = Plus / Minus

                                                                       
Query: 82  gggcatctccaactcggaggtgatctccgcgatctgcttgcggacgctcatgtcgatgaa 141
           ||||| ||| |||||||| ||||| ||| |||||||||| ||||||||||||||||| ||
Sbjct: 777 gggcaactcgaactcggacgtgatttcctcgatctgcttccggacgctcatgtcgattaa 718

                                                                       
Query: 142 gttggagctgtcgcggccgtactgcacggtgaatccggcgatgagctccgggtcgaggcg 201
           | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||  |
Sbjct: 717 gctggagccgtcgcggccgtactgcacggtgaagccggcgatgagctccgggtcgagctg 658

                                                                       
Query: 202 ggtcttgatccggacgttggcggcgccggtgatgttctgcacgtgcgtggcgatctgcgc 261
            |||||||  ||||||||   ||||||||| || ||||| ||||||   |||||||||||
Sbjct: 657 tgtcttgaggcggacgttcttggcgccggtcatcttctggacgtgctgcgcgatctgcgc 598

                                                                       
Query: 262 gaggtcctgcgactcgagctgcacgacggaggtgacgacggcctcctcggtgccggtgag 321
           |||||||||||||||||||||||||||||||||||||  |||  |||||||||| |||||
Sbjct: 597 gaggtcctgcgactcgagctgcacgacggaggtgacggtggcgacctcggtgcccgtgag 538

                                                                       
Query: 322 cgcgttgtaggcggtctcgaactcgcgcacgatctgcggcatcaggctcgcgcgggtgtt 381
           || |||| ||  | |||||||||||   ||||||| |||||  |   ||||||||  |||
Sbjct: 537 cgagttgaagatgttctcgaactcgacgacgatctccggcaagatcgtcgcgcggaagtt 478

                                                                       
Query: 382 gtcgatgacgacgttgaggaagttgacggtgtgcggctgcagctccgacgacttggcgat 441
           ||||| ||||||||||| ||||||||||  |||||||||||||||  |||||||||||||
Sbjct: 477 gtcgacgacgacgttgatgaagttgacgacgtgcggctgcagctcgtacgacttggcgat 418

                                                                       
Query: 442 ctcgtcgatgagcgccgtcttctcctcgcgcggcacggtggggttgtcgaagaactcggc 501
           ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 417 ctcgtcgatgagcgcggtcttctcctcgcgcgggacggtgggattgtcgaagaactcggc 358



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>gb|AE005107.1| Halobacterium sp. NRC-1 section 138 of 170 of the complete genome
          Length = 13368

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 436  ggcgatctcgtcgatgagcgccgt 459
            ||||||||||||||||||||||||
Sbjct: 6660 ggcgatctcgtcgatgagcgccgt 6683



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>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0004P24, complete sequence
          Length = 137721

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 275   tcgagctgcacgacggaggtgacgacg 301
             ||||||||||||||| |||||||||||
Sbjct: 79334 tcgagctgcacgacgtaggtgacgacg 79308



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 275     tcgagctgcacgacggaggtgacgacg 301
               ||||||||||||||| |||||||||||
Sbjct: 7737621 tcgagctgcacgacgtaggtgacgacg 7737647



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>dbj|AK063483.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B12, full
           insert sequence
          Length = 1269

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 275 tcgagctgcacgacggaggtgacgacg 301
           ||||||||||||||| |||||||||||
Sbjct: 882 tcgagctgcacgacgtaggtgacgacg 856



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 275     tcgagctgcacgacggaggtgacgacg 301
               ||||||||||||||| |||||||||||
Sbjct: 7807708 tcgagctgcacgacgtaggtgacgacg 7807734



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 436     ggcgatctcgtcgatgagcgccgtcttctcctcg 469
               |||||| || ||||||||||||||| ||||||||
Sbjct: 1760259 ggcgatgtcatcgatgagcgccgtcgtctcctcg 1760226



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>gb|U78047.1|ASU78047 Alcaligenes sp. pha synthase (phaC) gene, complete cds
          Length = 1799

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 222 cggcgccggtgatgttctgcac 243
           ||||||||||||||||||||||
Sbjct: 966 cggcgccggtgatgttctgcac 945



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>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds,
             stain:IL144
          Length = 58996

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 331   ggcggtctcgaactcgcgcacg 352
             ||||||||||||||||||||||
Sbjct: 14963 ggcggtctcgaactcgcgcacg 14942



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>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene
            cluster, partial sequence
          Length = 24637

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  gcggtctcgaactcgcgcacg 352
            |||||||||||||||||||||
Sbjct: 5609 gcggtctcgaactcgcgcacg 5589



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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 338     tcgaactcgcgcacgatctgc 358
               |||||||||||||||||||||
Sbjct: 2869874 tcgaactcgcgcacgatctgc 2869894



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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 338    tcgaactcgcgcacgatctgc 358
              |||||||||||||||||||||
Sbjct: 238610 tcgaactcgcgcacgatctgc 238590



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 101     gtgatctccgcgatctgcttg 121
               |||||||||||||||||||||
Sbjct: 5548668 gtgatctccgcgatctgcttg 5548688



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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete
             sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   tcgaactcgcgcacgatctgc 358
             |||||||||||||||||||||
Sbjct: 15830 tcgaactcgcgcacgatctgc 15810



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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 297    cgacggcctcctcggtgccgg 317
              |||||||||||||||||||||
Sbjct: 159449 cgacggcctcctcggtgccgg 159469



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 347     cgcacgatctgcggcatcagg 367
               |||||||||||||||||||||
Sbjct: 4931676 cgcacgatctgcggcatcagg 4931696



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>gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b DbhB (dbhB), general secretory
             pathway protein D (gspD), general secretory pathway
             protein E (gspE), general secretory pathway protein F
             (gspF), GspC (gspC), general secretory pathway protein G
             (gspG), general secretory pathway protein H (gspH),
             general secretory pathway protein I (gspI), general
             secretory pathway protein J (gspJ), general secretory
             pathway protein K (gspK), general secretory pathway
             protein L (gspL), general secretory pathway protein M
             (gspM), and general secretory pathway protein N (gspN)
             genes, complete cds; and unknown genes
          Length = 20302

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   tcgaactcgcgcacgatctgc 358
             |||||||||||||||||||||
Sbjct: 11042 tcgaactcgcgcacgatctgc 11022



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   tcgaactcgcgcacgatctgc 358
             |||||||||||||||||||||
Sbjct: 15763 tcgaactcgcgcacgatctgc 15743



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>ref|XM_482275.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2499

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 409  ggtgtgcggctgcagctccgacga 432
            ||||| ||||||||||||||||||
Sbjct: 2451 ggtgttcggctgcagctccgacga 2474



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>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   gacttggcgatctcgtcgat 450
             ||||||||||||||||||||
Sbjct: 31049 gacttggcgatctcgtcgat 31068



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>emb|AL611933.30| Human DNA sequence from clone RP11-374C13 on chromosome 1 Contains a
              eukaryotic translation elongation factor 1 delta (guanine
              nucleotide exchange protein) (EEF1D) pseudogene, complete
              sequence
          Length = 141273

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 31     agagacggcagaaaaaagaggacc 54
              ||||| ||||||||||||||||||
Sbjct: 141182 agagaaggcagaaaaaagaggacc 141205



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>emb|AL591916.8| Human DNA sequence from clone RP11-168B8 on chromosome 1 Contains the
            5' end of a novel gene (FLJ36179), complete sequence
          Length = 159159

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   agagacggcagaaaaaagaggacc 54
            ||||| ||||||||||||||||||
Sbjct: 1909 agagaaggcagaaaaaagaggacc 1932



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>emb|AJ130774.1|LDI130774 Laminaria digitata mRNA for phosphoglycerate kinase, partial
          Length = 1776

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  ctcggaggtgatctccgcga 113
           ||||||||||||||||||||
Sbjct: 920 ctcggaggtgatctccgcga 901



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>dbj|AB168295.1| Macaca fascicularis testis cDNA clone: QtsA-11046, similar to human
            transcription factor A, mitochondrial (TFAM), mRNA,
            RefSeq: NM_003201.1
          Length = 2489

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 37   ggcagaaaaaagaggacctaagca 60
            |||||||||||||||| |||||||
Sbjct: 1199 ggcagaaaaaagaggagctaagca 1176



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 409      ggtgtgcggctgcagctccgacga 432
                ||||| ||||||||||||||||||
Sbjct: 19166331 ggtgttcggctgcagctccgacga 19166308



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 306     cctcggtgccggtgagcgcg 325
               ||||||||||||||||||||
Sbjct: 1247447 cctcggtgccggtgagcgcg 1247428



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>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0086F04
          Length = 163579

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 409   ggtgtgcggctgcagctccgacga 432
             ||||| ||||||||||||||||||
Sbjct: 88696 ggtgttcggctgcagctccgacga 88673



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>gb|U40816.1|DAU40816 Diplomonad ATCC50380 glyceraldehyde-3-phosphate dehydrogenase gene,
           partial cds
          Length = 891

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 288 cggaggtgacgacggcctcctcggtgccggtgagcgcgtt 327
           |||||| |||||||||||| ||||||  ||||||| ||||
Sbjct: 808 cggaggagacgacggcctcttcggtgtaggtgagcacgtt 769



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>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940127D9, complete sequence
          Length = 102832

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  tctcgtcgatgagcgccgtc 460
            ||||||||||||||||||||
Sbjct: 6863 tctcgtcgatgagcgccgtc 6844


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,786,667
Number of Sequences: 3902068
Number of extensions: 2786667
Number of successful extensions: 53570
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52346
Number of HSP's gapped (non-prelim): 1218
length of query: 579
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 556
effective length of database: 17,143,297,704
effective search space: 9531673523424
effective search space used: 9531673523424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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