ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30h15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
2dbj|AP005969.3| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
3dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
4dbj|AK065862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 6e-38
5gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
6gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 42 2.3
7gb|AC148453.2| Xenopus tropicalis clone CH216-147I21, complete s... 42 2.3
8emb|AL731568.7| Human DNA sequence from clone RP11-367B6 on chro... 42 2.3
9emb|AL513487.3| Human DNA sequence from clone RP13-63I15 on chro... 42 2.3
10emb|AL356268.12| Human DNA sequence from clone RP11-134P2 on chr... 42 2.3
11emb|AL080243.21|HSBA12M9 Human DNA sequence from clone RP11-12M9... 42 2.3
12gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
13dbj|AK023961.1| Homo sapiens cDNA FLJ13899 fis, clone THYRO1001745 42 2.3
14gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
15gb|AC183492.1| Brassica oleracea Contig G, complete sequence 42 2.3
16gb|AF220352.1|AF220352 Plasmodium falciparum 41-3 antigen gene, ... 42 2.3
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
19gb|AC097480.3| Homo sapiens BAC clone RP11-123O22 from 4, comple... 42 2.3
20gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section ... 42 2.3
21dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
22dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
23dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 2.3
24dbj|AP000459.4| Homo sapiens genomic DNA, chromosome 21q, clone:... 42 2.3
25gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
26gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromoso... 42 2.3
27gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, compl... 42 2.3
28gb|M59961.1|PFABSA P.falciparum blood stage antigen (41-3) gene,... 42 2.3
29gb|AE017263.1| Mesoplasma florum L1 complete genome 40 9.0
30gb|AC116787.10| Mus musculus chromosome 6, clone RP24-296D21, co... 40 9.0
31gb|AC091436.3| Felis catus clone RP86-87J17, complete sequence 40 9.0
32gb|AC129083.4| Mus musculus chromosome 6 clone RP23-9E15, comple... 40 9.0
33ref|NM_001030727.1| Gallus gallus dihydrolipoamide dehydrogenase... 40 9.0
34gb|AC140134.2| Homo sapiens chromosome 5 clone RP11-1319K7, comp... 40 9.0
35gb|AC139778.2| Homo sapiens chromosome 5 clone RP11-1012N14, com... 40 9.0
36emb|AL591363.4| Human DNA sequence from clone RP11-45P22 on chro... 40 9.0
37emb|AL592049.3| Human DNA sequence from clone RP11-747I9 on chro... 40 9.0
38emb|AL356600.13| Human DNA sequence from clone RP5-974J14 on chr... 40 9.0
39gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, compl... 40 9.0
40emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405... 40 9.0
41emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P... 40 9.0
42emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 9.0
43emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chrom... 40 9.0
44emb|AJ719552.1| Gallus gallus mRNA for hypothetical protein, clo... 40 9.0
45emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in ... 40 9.0
46gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, comp... 40 9.0
47gb|AC164624.3| Mus musculus 10 BAC RP24-324P5 (Roswell Park Canc... 40 9.0
48gb|AC010217.6| Homo sapiens chromosome 5 clone CTC-202F24, compl... 40 9.0
49gb|AC016554.8| Homo sapiens chromosome 5 clone CTC-340H12, compl... 40 9.0
50dbj|AK080194.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 9.0
51gb|AC022119.4|AC022119 Homo sapiens chromosome 5 clone CTC-566F1... 40 9.0
52gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Canc... 40 9.0
53dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
54gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, comp... 40 9.0
55gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, comp... 40 9.0
56gb|AC154562.2| Mus musculus BAC clone RP23-400N5 from chromosome... 40 9.0
57gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosom... 40 9.0
58gb|AC139494.2| Homo sapiens chromosome 5 clone RP11-846E15, comp... 40 9.0
59emb|X94386.1|HIVILBC47 HIV-1 env V3-region DNA fragment (ILBC47) 40 9.0
60dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
61dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
62gb|AC004999.1|AC004999 Homo sapiens PAC clone RP1-215P15 from 5q... 40 9.0
63emb|AJ969070.1| Spiroplasma citri pSci2 plasmid 40 9.0
64gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, co... 40 9.0
65gb|AC154216.1| Mus musculus BAC clone RP24-354I21 from 13, compl... 40 9.0
66gb|L11172.1|PFARPI Plasmodium falciparum RNA polymerase I gene, ... 40 9.0
67emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on ch... 40 9.0 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  167 bits (84), Expect = 6e-38
 Identities = 219/264 (82%)
 Strand = Plus / Minus

                                                                           
Query: 381     ttttctagagctaatatcacctctcaccttacctctagtctcaagaattctggaagcaaa 440
               |||||||||  ||| ||||||||| ||| ||| ||| || |||| |||||||||||||||
Sbjct: 4965420 ttttctagaaataacatcacctcttaccgtacttcttgtttcaataattctggaagcaaa 4965361

                                                                           
Query: 441     acagatgaaaccaatgatggccattgcatacagcgctctgtaaggtgccaatgacatgga 500
                ||||||||||| ||||| |||| |||||| ||||| || ||||| ||||  | ||| ||
Sbjct: 4965360 gcagatgaaaccgatgattgccaatgcatagagcgccctataaggagccagagccattga 4965301

                                                                           
Query: 501     gctaataaaggaataacagccacctatgaggtagagaaagctcattccaacttcgcgccc 560
               ||||| ||| |||||| | ||| |||  |||||||||||||| | |||||| || |||||
Sbjct: 4965300 gctaacaaatgaataatatccagctacaaggtagagaaagcttagtccaacatctcgccc 4965241

                                                                           
Query: 561     tctccttccaggtaacttaaaagatataaagctggcagttggctgtgatcccaagagtcc 620
               |||||||||||||| ||| ||||||||| ||||  || ||||  ||||||| || |||||
Sbjct: 4965240 tctccttccaggtagcttgaaagatatacagctcacatttggtggtgatccgaaaagtcc 4965181

                                       
Query: 621     atgcagaataacaccaacacaaag 644
               ||||||||||   |||||||||||
Sbjct: 4965180 atgcagaatagtgccaacacaaag 4965157
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>dbj|AP005969.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1119_C03
          Length = 69710

 Score =  167 bits (84), Expect = 6e-38
 Identities = 219/264 (82%)
 Strand = Plus / Minus

                                                                        
Query: 381  ttttctagagctaatatcacctctcaccttacctctagtctcaagaattctggaagcaaa 440
            |||||||||  ||| ||||||||| ||| ||| ||| || |||| |||||||||||||||
Sbjct: 2881 ttttctagaaataacatcacctcttaccgtacttcttgtttcaataattctggaagcaaa 2822

                                                                        
Query: 441  acagatgaaaccaatgatggccattgcatacagcgctctgtaaggtgccaatgacatgga 500
             ||||||||||| ||||| |||| |||||| ||||| || ||||| ||||  | ||| ||
Sbjct: 2821 gcagatgaaaccgatgattgccaatgcatagagcgccctataaggagccagagccattga 2762

                                                                        
Query: 501  gctaataaaggaataacagccacctatgaggtagagaaagctcattccaacttcgcgccc 560
            ||||| ||| |||||| | ||| |||  |||||||||||||| | |||||| || |||||
Sbjct: 2761 gctaacaaatgaataatatccagctacaaggtagagaaagcttagtccaacatctcgccc 2702

                                                                        
Query: 561  tctccttccaggtaacttaaaagatataaagctggcagttggctgtgatcccaagagtcc 620
            |||||||||||||| ||| ||||||||| ||||  || ||||  ||||||| || |||||
Sbjct: 2701 tctccttccaggtagcttgaaagatatacagctcacatttggtggtgatccgaaaagtcc 2642

                                    
Query: 621  atgcagaataacaccaacacaaag 644
            ||||||||||   |||||||||||
Sbjct: 2641 atgcagaatagtgccaacacaaag 2618
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>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1012G11
          Length = 167168

 Score =  167 bits (84), Expect = 6e-38
 Identities = 219/264 (82%)
 Strand = Plus / Minus

                                                                          
Query: 381    ttttctagagctaatatcacctctcaccttacctctagtctcaagaattctggaagcaaa 440
              |||||||||  ||| ||||||||| ||| ||| ||| || |||| |||||||||||||||
Sbjct: 147952 ttttctagaaataacatcacctcttaccgtacttcttgtttcaataattctggaagcaaa 147893

                                                                          
Query: 441    acagatgaaaccaatgatggccattgcatacagcgctctgtaaggtgccaatgacatgga 500
               ||||||||||| ||||| |||| |||||| ||||| || ||||| ||||  | ||| ||
Sbjct: 147892 gcagatgaaaccgatgattgccaatgcatagagcgccctataaggagccagagccattga 147833

                                                                          
Query: 501    gctaataaaggaataacagccacctatgaggtagagaaagctcattccaacttcgcgccc 560
              ||||| ||| |||||| | ||| |||  |||||||||||||| | |||||| || |||||
Sbjct: 147832 gctaacaaatgaataatatccagctacaaggtagagaaagcttagtccaacatctcgccc 147773

                                                                          
Query: 561    tctccttccaggtaacttaaaagatataaagctggcagttggctgtgatcccaagagtcc 620
              |||||||||||||| ||| ||||||||| ||||  || ||||  ||||||| || |||||
Sbjct: 147772 tctccttccaggtagcttgaaagatatacagctcacatttggtggtgatccgaaaagtcc 147713

                                      
Query: 621    atgcagaataacaccaacacaaag 644
              ||||||||||   |||||||||||
Sbjct: 147712 atgcagaatagtgccaacacaaag 147689
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>dbj|AK065862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044F03, full
            insert sequence
          Length = 3873

 Score =  167 bits (84), Expect = 6e-38
 Identities = 219/264 (82%)
 Strand = Plus / Minus

                                                                        
Query: 381  ttttctagagctaatatcacctctcaccttacctctagtctcaagaattctggaagcaaa 440
            |||||||||  ||| ||||||||| ||| ||| ||| || |||| |||||||||||||||
Sbjct: 3535 ttttctagaaataacatcacctcttaccgtacttcttgtttcaataattctggaagcaaa 3476

                                                                        
Query: 441  acagatgaaaccaatgatggccattgcatacagcgctctgtaaggtgccaatgacatgga 500
             ||||||||||| ||||| |||| |||||| ||||| || ||||| ||||  | ||| ||
Sbjct: 3475 gcagatgaaaccgatgattgccaatgcatagagcgccctataaggagccagagccattga 3416

                                                                        
Query: 501  gctaataaaggaataacagccacctatgaggtagagaaagctcattccaacttcgcgccc 560
            ||||| ||| |||||| | ||| |||  |||||||||||||| | |||||| || |||||
Sbjct: 3415 gctaacaaatgaataatatccagctacaaggtagagaaagcttagtccaacatctcgccc 3356

                                                                        
Query: 561  tctccttccaggtaacttaaaagatataaagctggcagttggctgtgatcccaagagtcc 620
            |||||||||||||| ||| ||||||||| ||||  || ||||  ||||||| || |||||
Sbjct: 3355 tctccttccaggtagcttgaaagatatacagctcacatttggtggtgatccgaaaagtcc 3296

                                    
Query: 621  atgcagaataacaccaacacaaag 644
            ||||||||||   |||||||||||
Sbjct: 3295 atgcagaatagtgccaacacaaag 3272
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>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0071K19, complete sequence
          Length = 174752

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 355  tagtgtcaatgtctatgccag 375
            |||||||||||||||||||||
Sbjct: 7880 tagtgtcaatgtctatgccag 7900
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 419     tctcaagaattctggaagcaa 439
               |||||||||||||||||||||
Sbjct: 4458431 tctcaagaattctggaagcaa 4458451
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>gb|AC148453.2| Xenopus tropicalis clone CH216-147I21, complete sequence
          Length = 158285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 426    aattctggaagcaaaacagatgaaa 450
              ||||||| |||||||||||||||||
Sbjct: 109050 aattctgcaagcaaaacagatgaaa 109074
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>emb|AL731568.7| Human DNA sequence from clone RP11-367B6 on chromosome 10 Contains the
             5' end of the gene for CDA017 protein, a novel gene and a
             CpG island, complete sequence
          Length = 137034

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    taataagatcacatctgttca 113
             |||||||||||||||||||||
Sbjct: 53390 taataagatcacatctgttca 53410
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>emb|AL513487.3| Human DNA sequence from clone RP13-63I15 on chromosome Xq24-26.2,
             complete sequence
          Length = 144177

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 411   acctctagtctcaagaattctggaa 435
             ||||||||| |||||||||||||||
Sbjct: 23523 acctctagtgtcaagaattctggaa 23547
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>emb|AL356268.12| Human DNA sequence from clone RP11-134P2 on chromosome 10 Contains part
             of the HPSE2 gene for heparanase 2, complete sequence
          Length = 127381

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 390   gctaatatcacctctcacctt 410
             |||||||||||||||||||||
Sbjct: 56977 gctaatatcacctctcacctt 56997
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>emb|AL080243.21|HSBA12M9 Human DNA sequence from clone RP11-12M9 on chromosome 22, complete
              sequence
          Length = 176287

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    gttctttgcagtttgcagtca 279
              |||||||||||||||||||||
Sbjct: 118177 gttctttgcagtttgcagtca 118197
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 355    tagtgtcaatgtctatgccag 375
              |||||||||||||||||||||
Sbjct: 242822 tagtgtcaatgtctatgccag 242842
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>dbj|AK023961.1| Homo sapiens cDNA FLJ13899 fis, clone THYRO1001745
          Length = 3552

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 93   taataagatcacatctgttca 113
            |||||||||||||||||||||
Sbjct: 1192 taataagatcacatctgttca 1212
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>gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0096E22, complete sequence
          Length = 133846

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 355   tagtgtcaatgtctatgccag 375
             |||||||||||||||||||||
Sbjct: 92485 tagtgtcaatgtctatgccag 92505
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>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     tactgcaatcctaaacagagc 91
              |||||||||||||||||||||
Sbjct: 167508 tactgcaatcctaaacagagc 167488
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>gb|AF220352.1|AF220352 Plasmodium falciparum 41-3 antigen gene, complete cds
          Length = 2137

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 26  aaaattatttaaacaaaacaa 46
           |||||||||||||||||||||
Sbjct: 956 aaaattatttaaacaaaacaa 976
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 355    tagtgtcaatgtctatgccag 375
              |||||||||||||||||||||
Sbjct: 242822 tagtgtcaatgtctatgccag 242842
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 355     tagtgtcaatgtctatgccag 375
               |||||||||||||||||||||
Sbjct: 8263684 tagtgtcaatgtctatgccag 8263664
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>gb|AC097480.3| Homo sapiens BAC clone RP11-123O22 from 4, complete sequence
          Length = 168994

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atagaaaattatttaaacaaa 42
             |||||||||||||||||||||
Sbjct: 25679 atagaaaattatttaaacaaa 25699
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>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete
              sequence
          Length = 250531

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 26     aaaattatttaaacaaaacaa 46
              |||||||||||||||||||||
Sbjct: 101551 aaaattatttaaacaaaacaa 101531
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>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0003K21
          Length = 158810

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 355    tagtgtcaatgtctatgccag 375
              |||||||||||||||||||||
Sbjct: 146707 tagtgtcaatgtctatgccag 146687
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>dbj|AP004344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0639B07
          Length = 138780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 355   tagtgtcaatgtctatgccag 375
             |||||||||||||||||||||
Sbjct: 58796 tagtgtcaatgtctatgccag 58776
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>dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, section 31/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     aattatttaaacaaaacaagc 48
              |||||||||||||||||||||
Sbjct: 275416 aattatttaaacaaaacaagc 275396
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>dbj|AP000459.4| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-42M17, complete
              sequence
          Length = 171863

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     aattatttaaacaaaacaagc 48
              |||||||||||||||||||||
Sbjct: 164335 aattatttaaacaaaacaagc 164315
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 355    tagtgtcaatgtctatgccag 375
              |||||||||||||||||||||
Sbjct: 242819 tagtgtcaatgtctatgccag 242839
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>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete
              sequence
          Length = 242530

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 617    gtccatgcagaataacaccaa 637
              |||||||||||||||||||||
Sbjct: 158735 gtccatgcagaataacaccaa 158755
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>gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, complete sequence
          Length = 220202

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    taataagatcacatctgttca 113
             |||||||||||||||||||||
Sbjct: 88617 taataagatcacatctgttca 88637
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>gb|M59961.1|PFABSA P.falciparum blood stage antigen (41-3) gene, complete cds
          Length = 3844

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 26   aaaattatttaaacaaaacaa 46
            |||||||||||||||||||||
Sbjct: 1868 aaaattatttaaacaaaacaa 1888
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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     aaattatttaaacaaaacaa 46
              ||||||||||||||||||||
Sbjct: 230008 aaattatttaaacaaaacaa 230027
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>gb|AC116787.10| Mus musculus chromosome 6, clone RP24-296D21, complete sequence
          Length = 189538

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    ggaagcaaaacagatgaaac 451
              ||||||||||||||||||||
Sbjct: 108972 ggaagcaaaacagatgaaac 108991
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>gb|AC091436.3| Felis catus clone RP86-87J17, complete sequence
          Length = 149907

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     aaattatttaaacaaaacaa 46
              ||||||||||||||||||||
Sbjct: 122984 aaattatttaaacaaaacaa 123003
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>gb|AC129083.4| Mus musculus chromosome 6 clone RP23-9E15, complete sequence
          Length = 193732

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     aaattatttaaacaaaacaa 46
              ||||||||||||||||||||
Sbjct: 116696 aaattatttaaacaaaacaa 116715
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>ref|NM_001030727.1| Gallus gallus dihydrolipoamide dehydrogenase (E3 component of
           pyruvate dehydrogenase complex, 2-oxo-glutarate complex,
           branched chain keto acid dehydrogenase complex) (DLD),
           mRNA
          Length = 2032

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 30  ttatttaaacaaaacaagctggta 53
           |||||||||||||||||| |||||
Sbjct: 474 ttatttaaacaaaacaaggtggta 497
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>gb|AC140134.2| Homo sapiens chromosome 5 clone RP11-1319K7, complete sequence
          Length = 217820

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    agaaaattatttaaacaaaa 43
             ||||||||||||||||||||
Sbjct: 74998 agaaaattatttaaacaaaa 75017
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>gb|AC139778.2| Homo sapiens chromosome 5 clone RP11-1012N14, complete sequence
          Length = 180014

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     agaaaattatttaaacaaaa 43
              ||||||||||||||||||||
Sbjct: 152519 agaaaattatttaaacaaaa 152500
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>emb|AL591363.4| Human DNA sequence from clone RP11-45P22 on chromosome 10 Contains a
             peptidylprolyl isomerase A (cyclophilin A) (CYPA, CYPH)
             (PPIA) pseudogene and a tyrosine
             3-monooxygenase/tryptophan 5-monooxygenase activation
             protein, zeta polypeptide (KCIP-1) (YWHAZ) pseudogene,
             complete sequence
          Length = 115806

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   tgttcacttctatcacaaaa 127
             ||||||||||||||||||||
Sbjct: 70134 tgttcacttctatcacaaaa 70153
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>emb|AL592049.3| Human DNA sequence from clone RP11-747I9 on chromosome Xq11.1-12
             Contains a novel pseudogene, complete sequence
          Length = 104353

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   ttccagaatgtacagttact 166
             ||||||||||||||||||||
Sbjct: 91855 ttccagaatgtacagttact 91874
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>emb|AL356600.13| Human DNA sequence from clone RP5-974J14 on chromosome 1p31.2-32.1
              Contains part of the NEGR1 gene for neuronal growth
              regulator 1 and part of a novel gene, complete sequence
          Length = 131457

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 579    aaaagatataaagctggcag 598
              ||||||||||||||||||||
Sbjct: 100437 aaaagatataaagctggcag 100456
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>gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, complete sequence
          Length = 199996

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     agaaaattatttaaacaaaa 43
              ||||||||||||||||||||
Sbjct: 168790 agaaaattatttaaacaaaa 168809
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>emb|AL121867.13|HSA405O21 Human DNA sequence from clone RP11-405O21 on chromosome Xq21.1-21.32
             Contains STSs and GSSs, complete sequence
          Length = 131238

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 507   aaaggaataacagccacctatgag 530
             |||||||||| |||||||||||||
Sbjct: 59404 aaaggaataaaagccacctatgag 59381
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>emb|AL049561.17|HSDA109P7 Human DNA sequence from clone RP6-109P7 on chromosome Xq25-26.3,
             complete sequence
          Length = 103989

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   tcatccagaaagactaagag 299
             ||||||||||||||||||||
Sbjct: 84837 tcatccagaaagactaagag 84818
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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 601     ggctgtgatcccaagagtccatgc 624
               |||| |||||||||||||||||||
Sbjct: 2544664 ggctttgatcccaagagtccatgc 2544641
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>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4
          Length = 313050

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    agaaaattatttaaacaaaa 43
             ||||||||||||||||||||
Sbjct: 48044 agaaaattatttaaacaaaa 48025
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>emb|AJ719552.1| Gallus gallus mRNA for hypothetical protein, clone 3f8
          Length = 2032

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 30  ttatttaaacaaaacaagctggta 53
           |||||||||||||||||| |||||
Sbjct: 474 ttatttaaacaaaacaaggtggta 497
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>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8, complete
              sequence
          Length = 170195

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 22     atagaaaattatttaaacaaaaca 45
              ||||||||||||||||| ||||||
Sbjct: 129128 atagaaaattatttaaaaaaaaca 129151
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>gb|AC091956.3| Homo sapiens chromosome 5 clone RP11-430F16, complete sequence
          Length = 209754

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     agaaaattatttaaacaaaa 43
              ||||||||||||||||||||
Sbjct: 160762 agaaaattatttaaacaaaa 160743
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>gb|AC164624.3| Mus musculus 10 BAC RP24-324P5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 199853

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 603    ctgtgatcccaagagtccat 622
              ||||||||||||||||||||
Sbjct: 124893 ctgtgatcccaagagtccat 124874
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>gb|AC010217.6| Homo sapiens chromosome 5 clone CTC-202F24, complete sequence
          Length = 169137

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    agaaaattatttaaacaaaa 43
             ||||||||||||||||||||
Sbjct: 78656 agaaaattatttaaacaaaa 78637
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>gb|AC016554.8| Homo sapiens chromosome 5 clone CTC-340H12, complete sequence
          Length = 113213

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    agaaaattatttaaacaaaa 43
             ||||||||||||||||||||
Sbjct: 46598 agaaaattatttaaacaaaa 46617
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>dbj|AK080194.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530079F22
           product:unclassifiable, full insert sequence
          Length = 3211

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 603 ctgtgatcccaagagtccat 622
           ||||||||||||||||||||
Sbjct: 992 ctgtgatcccaagagtccat 973
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>gb|AC022119.4|AC022119 Homo sapiens chromosome 5 clone CTC-566F17, complete sequence
          Length = 155974

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   agaaaattatttaaacaaaa 43
            ||||||||||||||||||||
Sbjct: 8023 agaaaattatttaaacaaaa 8042
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>gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 183526

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 603  ctgtgatcccaagagtccat 622
            ||||||||||||||||||||
Sbjct: 3286 ctgtgatcccaagagtccat 3305
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 22       atagaaaattatttaaacaaaaca 45
                ||||||||||||||| ||||||||
Sbjct: 25630627 atagaaaattatttatacaaaaca 25630650
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>gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, complete sequence
          Length = 185457

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     agaaaattatttaaacaaaa 43
              ||||||||||||||||||||
Sbjct: 137477 agaaaattatttaaacaaaa 137496
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>gb|AC139497.3| Homo sapiens chromosome 5 clone RP11-855C21, complete sequence
          Length = 199004

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    agaaaattatttaaacaaaa 43
             ||||||||||||||||||||
Sbjct: 38184 agaaaattatttaaacaaaa 38203
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>gb|AC154562.2| Mus musculus BAC clone RP23-400N5 from chromosome 14, complete sequence
          Length = 180365

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   catctcacattcatacctca 198
             ||||||||||||||||||||
Sbjct: 57093 catctcacattcatacctca 57112
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>gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosome 17, complete sequence
          Length = 181773

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    agttctttgcagtttgcagt 277
              ||||||||||||||||||||
Sbjct: 152305 agttctttgcagtttgcagt 152324
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>gb|AC139494.2| Homo sapiens chromosome 5 clone RP11-846E15, complete sequence
          Length = 210288

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    agaaaattatttaaacaaaa 43
             ||||||||||||||||||||
Sbjct: 79737 agaaaattatttaaacaaaa 79756
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>emb|X94386.1|HIVILBC47 HIV-1 env V3-region DNA fragment (ILBC47)
          Length = 849

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 23  tagaaaattatttaaacaaaacaa 46
           ||||||||||||| ||||||||||
Sbjct: 271 tagaaaattattttaacaaaacaa 294
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>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0686C03
          Length = 164529

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 22     atagaaaattatttaaacaaaaca 45
              ||||||||||||||| ||||||||
Sbjct: 117318 atagaaaattatttatacaaaaca 117341
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>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0700D12
          Length = 145177

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 22   atagaaaattatttaaacaaaaca 45
            ||||||||||||||| ||||||||
Sbjct: 8375 atagaaaattatttatacaaaaca 8398
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>gb|AC004999.1|AC004999 Homo sapiens PAC clone RP1-215P15 from 5q12, complete sequence
          Length = 129541

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    agaaaattatttaaacaaaa 43
             ||||||||||||||||||||
Sbjct: 89564 agaaaattatttaaacaaaa 89545
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>emb|AJ969070.1| Spiroplasma citri pSci2 plasmid
          Length = 14407

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    cagatagaaaattatttaaa 38
             ||||||||||||||||||||
Sbjct: 13660 cagatagaaaattatttaaa 13641
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>gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, complete sequence
          Length = 171550

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    agttctttgcagtttgcagt 277
              ||||||||||||||||||||
Sbjct: 137122 agttctttgcagtttgcagt 137103
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>gb|AC154216.1| Mus musculus BAC clone RP24-354I21 from 13, complete sequence
          Length = 209934

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 573    taacttaaaagatataaagc 592
              ||||||||||||||||||||
Sbjct: 106536 taacttaaaagatataaagc 106555
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>gb|L11172.1|PFARPI Plasmodium falciparum RNA polymerase I gene, complete cds
          Length = 10359

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   agaaaattatttaaacaaaa 43
            ||||||||||||||||||||
Sbjct: 3951 agaaaattatttaaacaaaa 3970
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>emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on chromosome 15, complete
             sequence
          Length = 202342

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 580   aaagatataaagctggcagt 599
             ||||||||||||||||||||
Sbjct: 20260 aaagatataaagctggcagt 20241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,595,852
Number of Sequences: 3902068
Number of extensions: 7595852
Number of successful extensions: 181607
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181170
Number of HSP's gapped (non-prelim): 437
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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