ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30h05 |
|---|---|
| Clone Library Name | barley_pub |
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 38.1 bits (87), Expect = 0.025 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRPCH 494 T QL E FK+ G +K +++ + Q + F+EF D +SV ALA + V DRP Sbjct: 82 TADQLLEFFKQVGEVKF--VRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139 Query: 493 V 491 + Sbjct: 140 I 140
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 38.1 bits (87), Expect = 0.025 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRPCH 494 T QL E FK+ G +K +++ + Q + F+EF D +SV ALA + V DRP Sbjct: 82 TADQLLEFFKQVGEVKF--VRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139 Query: 493 V 491 + Sbjct: 140 I 140
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 38.1 bits (87), Expect = 0.025 Identities = 22/61 (36%), Positives = 33/61 (54%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRPCH 494 T QL E FK+ G +K +++ + Q + F+EF D +SV ALA + V DRP Sbjct: 79 TADQLLEFFKQVGEVKF--VRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 136 Query: 493 V 491 + Sbjct: 137 I 137
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 37.4 bits (85), Expect = 0.043 Identities = 22/68 (32%), Positives = 35/68 (51%) Frame = -1 Query: 679 HATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRP 500 ++T ++EE FK G I I + + +IEF+D+SS+++AL + RP Sbjct: 111 NSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRP 170 Query: 499 CHVEEKRT 476 V KRT Sbjct: 171 IVVTAKRT 178
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 37.0 bits (84), Expect = 0.056 Identities = 22/68 (32%), Positives = 35/68 (51%) Frame = -1 Query: 679 HATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRP 500 ++T ++EE FK G I I + + +IEF+D+SS+++AL + RP Sbjct: 71 NSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRP 130 Query: 499 CHVEEKRT 476 V KRT Sbjct: 131 IVVTAKRT 138
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 37.0 bits (84), Expect = 0.056 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKI-QGFCYGFIEFEDASSVQSA-LAASPVTIDDRP 500 T LE F RFG I+ + +R K + CY FIEFE + A V IDDR Sbjct: 252 TDEDLEIIFSRFGPIRSCEV-IRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRR 310 Query: 499 CHVE 488 HV+ Sbjct: 311 IHVD 314
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 37.0 bits (84), Expect = 0.056 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKI-QGFCYGFIEFEDASSVQSA-LAASPVTIDDRP 500 T LE F RFG I+ + +R K + CY FIEFE + A V IDDR Sbjct: 252 TDEDLEIIFSRFGPIRSCEV-IRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRR 310 Query: 499 CHVE 488 HV+ Sbjct: 311 IHVD 314
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 36.6 bits (83), Expect = 0.073 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -1 Query: 682 LHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDR 503 + + S L F+ FGT+ + V + C+GF+ + + +A+AASP +D Sbjct: 16 VQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGN 75 Query: 502 PCHVEEKR 479 VE KR Sbjct: 76 T--VELKR 81
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 35.8 bits (81), Expect = 0.12 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKI-QGFCYGFIEFEDASSVQSALA-ASPVTIDDRP 500 T LE F RFG I + +R K Y FIEFED S + A + V IDDR Sbjct: 265 TDEDLELIFSRFGKILSCEV-IRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRR 323 Query: 499 CHVE 488 HV+ Sbjct: 324 IHVD 327
>IKBA_HUMAN (P25963) NF-kappa-B inhibitor alpha (Major histocompatibility| complex enhancer-binding protein MAD3) (I-kappa-B-alpha) (IkappaBalpha) (IKB-alpha) Length = 317 Score = 34.3 bits (77), Expect = 0.36 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 349 SCTRP-FHSLSLQCNYHGLSCLHLGSCHLY 435 SCT P HS+ NY+G +CLHL S H Y Sbjct: 166 SCTTPHLHSILKATNYNGHTCLHLASIHGY 195
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 34.3 bits (77), Expect = 0.36 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGF--IEFEDASSVQSALAASPVTIDDRP 500 TP +L+ F G++ + + K G GF IEF + S V +AL + + +RP Sbjct: 67 TPEELQSHFASCGSVNR--VTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERP 124 Query: 499 CHVEEKRT 476 V KRT Sbjct: 125 LKVTPKRT 132
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 33.9 bits (76), Expect = 0.47 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDRPCH 494 TP Q+E+ FK G IK + + YG+IEFE + + AL + + + Sbjct: 76 TPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIA 135 Query: 493 VEEKRT 476 V KRT Sbjct: 136 VSRKRT 141
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 32.3 bits (72), Expect = 1.4 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -1 Query: 661 LEEEFKRFGTIKHDGIQVRSHKI-QGFCYGFIEFEDASSVQSA-LAASPVTIDDRPCHVE 488 LE F RFG I + +R K Y FIE+ED +S ++A V IDDR HV+ Sbjct: 267 LELIFGRFGKILSCEV-IRDQKTGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIHVD 325
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -1 Query: 685 PLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSAL 533 P + ++L E FK+FG + + + K + +GFI FED SV A+ Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDR 503 T L F ++G + I Q +GF++F+D + V + LA+ P T+D R Sbjct: 22 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 78
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 32.0 bits (71), Expect = 1.8 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -1 Query: 667 SQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTI-DDRPCHV 491 ++L+E F FG + I + + +GF+ F+D+ VQ L A P+ + +V Sbjct: 345 NELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNV 404 Query: 490 EEKRT 476 EEK+T Sbjct: 405 EEKKT 409
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 32.0 bits (71), Expect = 1.8 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -1 Query: 667 SQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTI-DDRPCHV 491 ++L+E F FG + I + + +GF+ F+D+ VQ L A P+ + +V Sbjct: 345 NELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNV 404 Query: 490 EEKRT 476 EEK+T Sbjct: 405 EEKKT 409
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -1 Query: 685 PLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSAL 533 P + ++L E FK+FG + + + K + +GFI FED SV A+ Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDR 503 T L F ++G + I Q +GF++F+D + V + LA+ P T+D R Sbjct: 22 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 78
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -1 Query: 685 PLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSAL 533 P + ++L+E F RFG + + + K + +GFI FED SV A+ Sbjct: 122 PHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 172 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDR 503 T L F ++G + I Q +GF++F+D + V + LA+ P T+D R Sbjct: 22 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 78
>IKBA_PIG (Q08353) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)| (IkappaBalpha) (IKB-alpha) (ECI-6) Length = 314 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 355 TRPFHSLSLQCNYHGLSCLHLGSCHLY 435 T+ HS+ NY+G +CLHL S H Y Sbjct: 169 TQHLHSILQATNYNGHTCLHLASIHGY 195
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -1 Query: 676 ATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGF--IEFEDASSVQSALAASPVTIDDR 503 AT +LE F G++ + + K G GF IEF D SV+++LA R Sbjct: 178 ATAEELEAHFHGCGSVNR--VTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGR 235 Query: 502 PCHVEEKRT 476 V KRT Sbjct: 236 QIKVIPKRT 244
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -1 Query: 685 PLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDD 506 P S+L++ F+ FG + I K+ F GF+ F+D+ VQ L+ P+ Sbjct: 346 PHEVDKSELKDFFQNFGNVVELRIN-SGGKLPNF--GFVVFDDSEPVQKVLSNRPIMFRG 402 Query: 505 R-PCHVEEKRT 476 +VEEK+T Sbjct: 403 AVRLNVEEKKT 413
>MURD_WIGBR (Q8D2Z4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 438 Score = 31.2 bits (69), Expect = 3.1 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Frame = +1 Query: 1 KLTGLHLNDCNILQLVTISPLLSLPKTRRTSIYDLNTLTTTSQEPSSRHTFFV-----NL 165 K++G H N N L + S +L +P+ LNTL S P H F + N+ Sbjct: 264 KISGFH-NYLNALVSLIFSDILKIPRE-----ISLNTLKNFSGLP---HRFQIIHKKNNI 314 Query: 166 STFNDNEIANFYQRIATELTLRLPGHHH 249 S ND++ N IA ++++ G+ H Sbjct: 315 SWINDSKSTNVSSTIAALSSIKIKGNIH 342
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -1 Query: 676 ATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGF--IEFEDASSVQSALAASPVTIDDR 503 AT +LE F G++ + + K G GF IEF D SV+++LA R Sbjct: 182 ATAEELEAHFHGCGSVNR--VTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGR 239 Query: 502 PCHVEEKRT 476 V KRT Sbjct: 240 QIKVIPKRT 248
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -1 Query: 676 ATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGF--IEFEDASSVQSALAASPVTIDDR 503 AT +LE F G++ + + K G GF IEF D SV+++LA R Sbjct: 182 ATAEELEAHFHGCGSVNR--VTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGR 239 Query: 502 PCHVEEKRT 476 V KRT Sbjct: 240 QIKVIPKRT 248
>PLSC_YEAST (P33333) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase| (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT) Length = 303 Score = 30.8 bits (68), Expect = 4.0 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +1 Query: 385 CNYHG----LSCLHLGSCHLYPVETFPCYYHVNQEFFFLQHGMVGHQSSQEKPRVHFELS 552 C ++G + C +G HL T C+YHV + L +VG ++ +KP + ++ Sbjct: 23 CGFYGVIASILCTLIGKQHLAQWITARCFYHVMKLMLGLDVKVVGEENLAKKP--YIMIA 80 Query: 553 WHPQTL 570 H TL Sbjct: 81 NHQSTL 86
>YHC3_YEAST (P38742) Hypothetical 130.0 kDa protein in SNF6-SPO11 intergenic| region Length = 1146 Score = 30.8 bits (68), Expect = 4.0 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Frame = +1 Query: 124 SQEPSSRHTFFVNLSTFNDNEIANFYQRIATELTLRLPGHHHDHRWQS---DRPAGSQHH 294 SQ + N S D I+++ +L G H+ S D P S HH Sbjct: 279 SQSTKKGNKLLKNTSNETDGNAFTGSCSISSKKSLSSTGEHNQELRNSSLNDTPGQSPHH 338 Query: 295 LHDLTHLYHRLCLHTQIDSCTR 360 H H YH+ +Q +S T+ Sbjct: 339 YHHRYHHYHKNAATSQRNSHTQ 360
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/67 (22%), Positives = 31/67 (46%) Frame = -1 Query: 685 PLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDD 506 P + T + L F R+G + I K + +GF+ FE+ SSV+ + ++ Sbjct: 104 PSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNG 163 Query: 505 RPCHVEE 485 + +++ Sbjct: 164 KQVEIKK 170 Score = 30.4 bits (67), Expect = 5.2 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTIDDR--- 503 T L F RFG I + + + +GF+ F D ++V L P T+D R Sbjct: 19 TQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTID 78 Query: 502 --PCH 494 PC+ Sbjct: 79 PKPCN 83
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 30.8 bits (68), Expect = 4.0 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVR---SHKIQGFCYGFIEFEDASSVQSALAASPVTIDDR 503 T L ++++GT+ D + +R S + +GF GF+ F + V +A+A P TID R Sbjct: 21 TEESLRNYYEQWGTLT-DCVVMRDPASKRSRGF--GFVTFSCMNEVDAAMATRPHTIDGR 77 Query: 502 PCHVEEKR 479 VE KR Sbjct: 78 V--VEPKR 83
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 30.4 bits (67), Expect = 5.2 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -1 Query: 685 PLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAASPVTI-D 509 P S+L++ F+ +G + I K+ F GF+ F+D+ VQ L+ P+ Sbjct: 348 PHEVDKSELKDFFQSYGNVVELRIN-SGGKLPNF--GFVVFDDSEPVQKVLSNRPIMFRG 404 Query: 508 DRPCHVEEKRT 476 + +VEEK+T Sbjct: 405 EVRLNVEEKKT 415
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 30.4 bits (67), Expect = 5.2 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -1 Query: 685 PLHATPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALAA 527 P AT +LEE F RFG I+ + + + GF F+E++D + A+ A Sbjct: 11 PSDATSQELEEIFDRFGRIRKVWV---ARRPPGF--AFVEYDDVRDAEDAVRA 58
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 241 HHHDHRWQSDRPAGSQHHLHDL-THLYHRLCLHTQIDS 351 HHH R Q R GS HH H H +HR L + DS Sbjct: 514 HHHRRRRQRHRRRGSHHHHHHPGRHGHHRCDLGSGSDS 551
>POXM_DROME (P23757) Paired box pox-meso protein (Paired box mesodermal| protein) Length = 402 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +1 Query: 235 PGHHHDHRWQSDRPAGSQHHLHDLTHLYHRL 327 P HHH H QS A S HH+H H + L Sbjct: 223 PHHHHHH--QSAAAAASAHHVHAHAHAHAHL 251
>IKBA_RAT (Q63746) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)| (IkappaBalpha) (IKB-alpha) (RL/IF-1) Length = 314 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 349 SCT-RPFHSLSLQCNYHGLSCLHLGSCHLY 435 +CT + HS+ NY+G +CLHL S H Y Sbjct: 166 TCTPQHLHSVLQATNYNGHTCLHLASIHGY 195
>IKBA_MOUSE (Q9Z1E3) NF-kappa-B inhibitor alpha (I-kappa-B-alpha)| (IkappaBalpha) (IKB-alpha) Length = 314 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 349 SCT-RPFHSLSLQCNYHGLSCLHLGSCHLY 435 +CT + HS+ NY+G +CLHL S H Y Sbjct: 166 TCTPQHLHSVLQATNYNGHTCLHLASIHGY 195
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 30.0 bits (66), Expect = 6.9 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -1 Query: 673 TPSQLEEEFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSALA 530 T +L F+ FGTI + I V G C GF+++ D S ++A+A Sbjct: 325 TEDELRAYFQPFGTIVYVKIPV------GKCCGFVQYVDRLSAEAAIA 366
>SYS_PSESM (Q87ZS9) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 426 Score = 29.6 bits (65), Expect = 9.0 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = -1 Query: 652 EFKRFGTIKHDGIQVRSHKIQGFCYGFIEFEDASSVQSA 536 E +R+GT G +V+ H G +G+++FE A+ + A Sbjct: 122 EVRRWGTPTAFGFEVKDHVALGEKFGWLDFETAAKLSGA 160
>PCDGL_PANTR (Q5DRA3) Protocadherin gamma C4 precursor (PCDH-gamma-C4)| Length = 938 Score = 29.6 bits (65), Expect = 9.0 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +1 Query: 31 NILQLVTISPLLSLPKTRRTSIYDLNTLTTTSQEP--SSRHTFFVNLSTFNDNEIANFYQ 204 N LVT PL K S YD+ + + P S+ T F+N+S NDN +F+Q Sbjct: 403 NQFSLVTAGPLDREAK----SSYDIMVTASDAGNPPLSTHRTIFLNISDVNDNP-PSFFQ 457 Query: 205 R 207 R Sbjct: 458 R 458
>PCDGL_HUMAN (Q9Y5F7) Protocadherin gamma C4 precursor (PCDH-gamma-C4)| Length = 938 Score = 29.6 bits (65), Expect = 9.0 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +1 Query: 31 NILQLVTISPLLSLPKTRRTSIYDLNTLTTTSQEP--SSRHTFFVNLSTFNDNEIANFYQ 204 N LVT PL K S YD+ + + P S+ T F+N+S NDN +F+Q Sbjct: 403 NQFSLVTAGPLDREAK----SSYDIMVTASDAGNPPLSTHRTIFLNISDVNDNP-PSFFQ 457 Query: 205 R 207 R Sbjct: 458 R 458 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,809,526 Number of Sequences: 219361 Number of extensions: 1598453 Number of successful extensions: 4437 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 4080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4373 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
