ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags30h04 |
|---|---|
| Clone Library Name | barley_pub |
>CFA_ECOLI (P0A9H7) Cyclopropane-fatty-acyl-phospholipid synthase (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) Length = 381 Score = 96.7 bits (239), Expect = 6e-20 Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 5/165 (3%) Frame = -3 Query: 713 DYRQIPPCKYGAIISCGMIEHVGHEYMDEFFACCESYLAEDGILVLQFISAPEERYEQYR 534 DYR + ++ I+S GM EHVG + D +FA + L +GI +L I + Sbjct: 220 DYRDLND-QFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGS--------- 269 Query: 533 RRTD-----FIKEYIFPGGCLPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNF 369 ++TD +I +YIFP GCLPS+ ++ A ++ F +E N G Y TTLM W + F Sbjct: 270 KKTDLNVDPWINKYIFPNGCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERF 327 Query: 368 MINKDEILALGFDDKFMRIWEYYLIFSASCFKSRTLGDYQVVFSR 234 + EI A + ++F R++ YYL A F++R + +QVVFSR Sbjct: 328 LAAWPEI-ADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 371
>CFA_ECOL6 (P0A9H8) Cyclopropane-fatty-acyl-phospholipid synthase (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) Length = 381 Score = 96.7 bits (239), Expect = 6e-20 Identities = 60/165 (36%), Positives = 91/165 (55%), Gaps = 5/165 (3%) Frame = -3 Query: 713 DYRQIPPCKYGAIISCGMIEHVGHEYMDEFFACCESYLAEDGILVLQFISAPEERYEQYR 534 DYR + ++ I+S GM EHVG + D +FA + L +GI +L I + Sbjct: 220 DYRDLND-QFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGS--------- 269 Query: 533 RRTD-----FIKEYIFPGGCLPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNF 369 ++TD +I +YIFP GCLPS+ ++ A ++ F +E N G Y TTLM W + F Sbjct: 270 KKTDLNVDPWINKYIFPNGCLPSVRQI--AQSSEPHFVMEDWHNFGADYDTTLMAWYERF 327 Query: 368 MINKDEILALGFDDKFMRIWEYYLIFSASCFKSRTLGDYQVVFSR 234 + EI A + ++F R++ YYL A F++R + +QVVFSR Sbjct: 328 LAAWPEI-ADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSR 371
>CFA1_MYCTU (Q11195) Cyclopropane-fatty-acyl-phospholipid synthase 1 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 1) Length = 287 Score = 77.4 bits (189), Expect = 4e-14 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 9/149 (6%) Frame = -3 Query: 677 IISCGMIEHVGHEYMDEFFACCESYLAEDGILVLQFISA--PEERYEQ-------YRRRT 525 I+S G EH GHE D FF+ L DG+++L I+ P+E +E+ + R Sbjct: 133 IVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFL 192 Query: 524 DFIKEYIFPGGCLPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFMINKDEIL 345 FI IFPGG LPS+ V +++ F++ V+++ PHY TL W NK + + Sbjct: 193 KFIVTEIFPGGRLPSIPMVQEC-ASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAI 251 Query: 344 ALGFDDKFMRIWEYYLIFSASCFKSRTLG 258 AL ++ ++E Y+ + C + +G Sbjct: 252 ALQSEE----VYERYMKYLTGCAEMFRIG 276
>YLP3_PSEPU (P31049) Hypothetical 44.7 kDa methyltransferase in lpd-3 5'region| (EC 2.1.1.-) (ORF3) Length = 394 Score = 69.7 bits (169), Expect = 8e-12 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 2/163 (1%) Frame = -3 Query: 713 DYRQIPPC-KYGAIISCGMIEHVGHEYMDEFFACCESYLAEDGILVLQFISAPE-ERYEQ 540 DYR +P ++ ++S GM EHVGH + + + E G+++ I+A + Sbjct: 217 DYRDLPQDGRFDKVVSVGMFEHVGHANLALYCQKLFGAVREGGLVMNHGITAKHVDGRPV 276 Query: 539 YRRRTDFIKEYIFPGGCLPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFMIN 360 R +FI Y+FP G LP L+ ++SA + + VE++ HY TL W +N Sbjct: 277 GRGAGEFIDRYVFPHGELPHLS-MISASICEAGLEVVDVESLRLHYAKTLHHWSENLENQ 335 Query: 359 KDEILALGFDDKFMRIWEYYLIFSASCFKSRTLGDYQVVFSRP 231 + AL +K +RIW YL A F+ + +Q++ +P Sbjct: 336 LHKAAAL-VPEKTLRIWRLYLAGCAYAFEKGWINLHQILAVKP 377
>CFA2_MYCLE (Q49807) Cyclopropane-fatty-acyl-phospholipid synthase (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase) Length = 308 Score = 65.9 bits (159), Expect = 1e-10 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 16/149 (10%) Frame = -3 Query: 677 IISCGMIEH-------VGHEYMDEFFACCESYLAEDGILVLQFISAPEERYEQ------- 540 IIS G EH G E D FF C L +DG ++L I P+ + + Sbjct: 147 IISLGAFEHFADGAGDAGFERYDSFFKMCYDVLPDDGRMLLHTIIVPDAKETKELGLTTP 206 Query: 539 --YRRRTDFIKEYIFPGGCLPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFM 366 R FI IFPGG LP +++V ++++ F++E IG HY TL W Sbjct: 207 MSLLRFIKFILTEIFPGGRLPKISQV-DHYSSNAGFTVERYHRIGSHYVPTLNAWAAALE 265 Query: 365 INKDEILALGFDDKFMRIWEYYLIFSASC 279 +KDE +AL + +I++ Y+ + C Sbjct: 266 AHKDEAIAL----QGRQIYDTYMHYLTGC 290
>CFA2_MYCTU (P0A5P0) Cyclopropane-fatty-acyl-phospholipid synthase 2 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 2) Length = 302 Score = 59.3 bits (142), Expect = 1e-08 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 16/153 (10%) Frame = -3 Query: 677 IISCGMIEH-------VGHEYMDEFFACCESYLAEDGILVLQFISAPEERYEQYRRRTD- 522 I+S G EH G E D FF + +DG ++L I+ P++ Q T Sbjct: 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSP 200 Query: 521 --------FIKEYIFPGGCLPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFM 366 FI IFPGG LP +++V ++++ + +E IG +Y TL W D Sbjct: 201 MSLLRFIKFILTEIFPGGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADALQ 259 Query: 365 INKDEILALGFDDKFMRIWEYYLIFSASCFKSR 267 +KDE +AL + + I+ +YL + F+ + Sbjct: 260 AHKDEAIALKGQETY-DIYMHYLRGCSDLFRDK 291
>CFA2_MYCBO (P0A5P1) Cyclopropane-fatty-acyl-phospholipid synthase 2 (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Cyclopropane mycolic acid synthase 2) Length = 302 Score = 59.3 bits (142), Expect = 1e-08 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 16/153 (10%) Frame = -3 Query: 677 IISCGMIEH-------VGHEYMDEFFACCESYLAEDGILVLQFISAPEERYEQYRRRTD- 522 I+S G EH G E D FF + +DG ++L I+ P++ Q T Sbjct: 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSP 200 Query: 521 --------FIKEYIFPGGCLPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFM 366 FI IFPGG LP +++V ++++ + +E IG +Y TL W D Sbjct: 201 MSLLRFIKFILTEIFPGGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADALQ 259 Query: 365 INKDEILALGFDDKFMRIWEYYLIFSASCFKSR 267 +KDE +AL + + I+ +YL + F+ + Sbjct: 260 AHKDEAIALKGQETY-DIYMHYLRGCSDLFRDK 291
>CFA_CITFR (P45509) Cyclopropane-fatty-acyl-phospholipid synthase (EC| 2.1.1.79) (Cyclopropane fatty acid synthase) (CFA synthase) (Fragment) Length = 89 Score = 47.8 bits (112), Expect = 3e-05 Identities = 28/76 (36%), Positives = 40/76 (52%) Frame = -3 Query: 461 AMTTSSRFSIEHVENIGPHYYTTLMRWRDNFMINKDEILALGFDDKFMRIWEYYLIFSAS 282 A + SRF +E N G Y TLM W + F E L+ + F R++ YYL A Sbjct: 5 AEASESRFVMEDWHNFGSDYDKTLMAWHERFNQAWPE-LSSRYSATFRRMFNYYLCACAG 63 Query: 281 CFKSRTLGDYQVVFSR 234 F++R + +QV+FSR Sbjct: 64 AFRARDIELWQVLFSR 79
>MMA1_MYCTU (P0A5Q0) Methoxy mycolic acid synthase 1 (EC 2.1.1.-) (Mycolic| methyltransferase A 1) Length = 286 Score = 47.0 bits (110), Expect = 6e-05 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Frame = -3 Query: 626 FFACCESYLAEDGILVLQFISAPEERYEQYR---------RRTDFIKEYIFPGGCLPSLA 474 FF L +DG ++L + + R+ + R F++E IFPGG LPS Sbjct: 149 FFERSYDILPDDGRMLLHSLFTYDRRWLHEQGIALTMSDLRFLKFLRESIFPGGELPSEP 208 Query: 473 RVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFMINKDEILALGFDDKFMRIWEY 303 ++ + F+IEHV+ + HY TL W N ++ +A+ ++ + Y Sbjct: 209 DIVDNAQAAG-FTIEHVQLLQQHYARTLDAWAANLQAARERAIAVQSEEVYNNFMHY 264
>MMA1_MYCBO (P0A5Q1) Methoxy mycolic acid synthase 1 (EC 2.1.1.-) (Mycolic| methyltransferase A 1) Length = 286 Score = 47.0 bits (110), Expect = 6e-05 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Frame = -3 Query: 626 FFACCESYLAEDGILVLQFISAPEERYEQYR---------RRTDFIKEYIFPGGCLPSLA 474 FF L +DG ++L + + R+ + R F++E IFPGG LPS Sbjct: 149 FFERSYDILPDDGRMLLHSLFTYDRRWLHEQGIALTMSDLRFLKFLRESIFPGGELPSEP 208 Query: 473 RVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFMINKDEILALGFDDKFMRIWEY 303 ++ + F+IEHV+ + HY TL W N ++ +A+ ++ + Y Sbjct: 209 DIVDNAQAAG-FTIEHVQLLQQHYARTLDAWAANLQAARERAIAVQSEEVYNNFMHY 264
>RYR2_HUMAN (Q92736) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) (hRYR-2) Length = 4967 Score = 32.3 bits (72), Expect = 1.5 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -1 Query: 289 LRLASSHEHLEITRLFSLVQATVG*PCLDSRQISLSVQLSN 167 L++ S+HEH+E+TR+ + ++ PCL Q S Q SN Sbjct: 1259 LQVPSNHEHIEVTRIDGTIDSS---PCLKVTQKSFGSQNSN 1296
>RYR2_RABIT (P30957) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) Length = 4969 Score = 32.3 bits (72), Expect = 1.5 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -1 Query: 289 LRLASSHEHLEITRLFSLVQATVG*PCLDSRQISLSVQLSN 167 L++ S+HEH+E+TR+ + ++ PCL Q S Q SN Sbjct: 1259 LQVPSNHEHIEVTRIDGTIDSS---PCLKVTQKSFGSQNSN 1296
>DSG1A_MOUSE (Q61495) Desmoglein-1 alpha precursor (Dsg1-alpha) (Desmoglein-1)| (Desmosomal glycoprotein I) (DG1) (DGI) Length = 1057 Score = 30.8 bits (68), Expect = 4.3 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 163 NGSIAERTRISDGYQGTASRRLPGREKTTW 252 +GS +R R+++GYQGT+S P R +W Sbjct: 499 SGSGDDRDRVTNGYQGTSSTENPQRVTGSW 528
>Y1285_METJA (Q58681) Hypothetical protein MJ1285| Length = 184 Score = 30.8 bits (68), Expect = 4.3 Identities = 19/74 (25%), Positives = 38/74 (51%) Frame = -3 Query: 455 TTSSRFSIEHVENIGPHYYTTLMRWRDNFMINKDEILALGFDDKFMRIWEYYLIFSASCF 276 T+ SR I+++EN+ Y +D F+I K+ +F+RI +Y I ++ + Sbjct: 78 TSESRELIKYLENLNGSYIIAYSPSKDEFIITKNH--------EFLRIIGHYNI--SAKY 127 Query: 275 KSRTLGDYQVVFSR 234 K GD ++++ + Sbjct: 128 KKGEYGDIEIIYPK 141
>GRPE_CLOTE (Q892Q9) Protein grpE (HSP-70 cofactor)| Length = 200 Score = 30.4 bits (67), Expect = 5.6 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Frame = -3 Query: 548 YEQYRRRTDFIKEYIFPGGCLPSLARVMSAMTTSSRFSIE--HVENIGPHYYTTLMRWRD 375 Y+ YR+RTD KE ++ C L ++ + R + +E++ TL +++D Sbjct: 80 YDNYRKRTDREKEGLYASACEDVLKEILPVLDNLERAILAKGDIEDLKKGVDMTLKQFKD 139 Query: 374 NF 369 +F Sbjct: 140 SF 141
>CDC2_CAEEL (P34556) Cell division control protein 2 homolog (EC 2.7.11.22) (EC| 2.7.11.23) (p34 protein kinase) Length = 332 Score = 30.0 bits (66), Expect = 7.3 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = -3 Query: 515 KEYIFPGGC-LPSLARVMSAMTTSSRFSIEHVENIGPHYYTTLMRWRDNFMINKDEILAL 339 K+ +F G + L R+ + T + VE++ P Y T +WR+NF+ +K Sbjct: 218 KKPLFQGDSEIDELFRIFRVLGTPTELEWNGVESL-PDYKATFPKWRENFLRDKFYDKKT 276 Query: 338 G---FDDKFMRIWEYYLIFSAS 282 G DD + E LI+ S Sbjct: 277 GKHLLDDTAFSLLEGLLIYDPS 298 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,851,634 Number of Sequences: 219361 Number of extensions: 2361399 Number of successful extensions: 5741 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5727 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7252940416 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
