Clone Information

BLAST Search Result

Clone Name	rbags30g22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK106179.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	1e-38
2	dbj\|AK059770.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	1e-38
3	gb\|AC138195.2\| Oryza sativa (japonica cultivar-group) chromosome...	121	3e-24
4	gb\|AC135793.4\| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1...	121	3e-24
5	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
6	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	121	3e-24
7	gb\|BT009571.1\| Triticum aestivum clone wre1n.pk0021.e3:fis, full...	94	7e-16
8	dbj\|AK061247.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	74	6e-10
9	gb\|AY107519.1\| Zea mays PCO078033 mRNA sequence	52	0.002
10	gb\|AC112208.3\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.036
11	ref\|XM_416865.1\| PREDICTED: Gallus gallus similar to short statu...	46	0.14
12	ref\|XM_477999.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.56
13	gb\|AY177404.1\| Secale cereale O-methyltransferase mRNA, complete...	44	0.56
14	ref\|XM_471443.1\| Oryza sativa (japonica cultivar-group), predic...	42	2.2
15	gb\|AC025277.10\| Homo sapiens chromosome 16 clone CTD-3229J4, com...	42	2.2
16	gb\|AC068473.19\| Homo sapiens chromosome 18, clone RP11-567M16, c...	42	2.2
17	gb\|AC068910.45\| Mus musculus strain C57BL/6J chromosome 9 clone ...	42	2.2
18	gb\|AC096785.29\| Mus musculus strain C57BL/6J clone rp23-382i2 ma...	42	2.2
19	emb\|Z50860.1\|HSN76A1 Human DNA sequence from clone LL22NC03-76A1...	42	2.2
20	emb\|AL731611.2\|OSJN00253 Oryza sativa genomic DNA, chromosome 4,...	42	2.2
21	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
22	gb\|AF546189.1\| Contiguous genomic DNA sequence comprising the 19...	42	2.2
23	dbj\|AK105688.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
24	dbj\|AK065632.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.2
25	emb\|CT030124.12\| Mouse DNA sequence from clone RP23-100B15 on ch...	42	2.2
26	gb\|AC074314.29\| 433m13, complete sequence	42	2.2
27	emb\|CR786572.20\| Zebrafish DNA sequence from clone DKEY-258F14 i...	40	8.7
28	emb\|Z92844.3\|HS435C23 Human DNA sequence from clone RP3-435C23 o...	40	8.7
29	gb\|AC012588.14\| Homo sapiens chromosome 18, clone RP11-17A19, co...	40	8.7
30	gb\|AC090206.7\| Homo sapiens chromosome 18, clone RP11-349H17, co...	40	8.7
31	gb\|AC108935.5\| Homo sapiens BAC clone RP11-503L19 from 4, comple...	40	8.7
32	dbj\|AK163573.1\| Mus musculus adult male corpora quadrigemina cDN...	40	8.7
33	emb\|BX682555.6\| Zebrafish DNA sequence from clone DKEY-217L10 in...	40	8.7
34	gb\|AC152165.2\| Mus musculus BAC clone RP24-159A20 from chromosom...	40	8.7
35	dbj\|AK045822.1\| Mus musculus adult male corpora quadrigemina cDN...	40	8.7
36	gb\|BC049666.1\| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cD...	40	8.7
37	gb\|AC130462.3\| Homo sapiens chromosome 16 clone CTA-67A1, comple...	40	8.7
38	gb\|AC034099.16\| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, R...	40	8.7
39	dbj\|BA000028.3\| Oceanobacillus iheyensis HTE831 DNA, complete ge...	40	8.7
40	gb\|AY110678.1\| Zea mays CL33606_1 mRNA sequence	40	8.7
41	emb\|CR388184.33\| Zebrafish DNA sequence from clone CH211-261O3 i...	40	8.7
42	dbj\|AK113383.1\| Ciona intestinalis cDNA, clone:cieg001j23, full ...	40	8.7
43	ref\|NM_177265.2\| Mus musculus RIKEN cDNA 6330512M04 gene (633051...	40	8.7
44	dbj\|AP006364.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	8.7
45	emb\|AL603651.14\| Mouse DNA sequence from clone RP23-398J2 on chr...	40	8.7

>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score =  168 bits (85), Expect = 1e-38
 Identities = 208/249 (83%)
 Strand = Plus / Minus

                                                                        
Query: 371  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 430
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1033 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 974

                                                                        
Query: 431  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 490
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 973  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 914

                                                                        
Query: 491  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 550
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 913  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 854

                                                                        
Query: 551  agcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagttaatg 610
            ||||||||  ||||||  ||||| ||||||||||||| |||||| || |||||||||| |
Sbjct: 853  agcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacg 794

                     
Query: 611  actccatca 619
            || ||||||
Sbjct: 793  acaccatca 785

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>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score =  168 bits (85), Expect = 1e-38
 Identities = 208/249 (83%)
 Strand = Plus / Minus

                                                                        
Query: 371  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 430
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 1038 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 979

                                                                        
Query: 431  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 490
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 978  ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 919

                                                                        
Query: 491  ctgcactgggctaggattttcacgcaatcctcatcactccaaaagtgtagcacaagcttg 550
            |||||||| |  | ||| ||||||||||| ||||| |||||   ||| |  |||||||||
Sbjct: 918  ctgcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttg 859

                                                                        
Query: 551  agcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagttaatg 610
            ||||||||  ||||||  ||||| ||||||||||||| |||||| || |||||||||| |
Sbjct: 858  agcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacg 799

                     
Query: 611  actccatca 619
            || ||||||
Sbjct: 798  acaccatca 790

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>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
              complete sequence
          Length = 147381

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                          
Query: 371    accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 430
              |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 123040 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 122981

                                                                          
Query: 431    ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 490
              |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 122980 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 122921

                                                       
Query: 491    ctgcactgggctaggattttcacgcaatcctcatcactcca 531
              |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 122920 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 122880



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 136/167 (81%)
 Strand = Plus / Minus

                                                                         
Query: 350   cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 409
             |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 64375 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 64316

                                                                         
Query: 410   attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 469
             ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 64315 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 64256

                                                            
Query: 470   tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 516
             |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 64255 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 64209



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 547    cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 606
              ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 119697 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 119638

                           
Query: 607    aatgactccatca 619
              || ||| ||||||
Sbjct: 119637 aacgacaccatca 119625

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>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 430
            |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 8789 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 8730

                                                                        
Query: 431  ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 490
            |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 8729 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 8670

                                                     
Query: 491  ctgcactgggctaggattttcacgcaatcctcatcactcca 531
            |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 8669 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 8629



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 547  cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 606
            ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 5446 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 5387

                         
Query: 607  aatgactccatca 619
            || ||| ||||||
Sbjct: 5386 aacgacaccatca 5374



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 500   gctaggattttcacgcaatcctcatcactccaa 532
             ||||||||||||||||||||||  |||||||||
Sbjct: 62050 gctaggattttcacgcaatcctggtcactccaa 62018

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 371      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 430
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11490748 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11490807

                                                                            
Query: 431      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 490
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11490808 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11490867

                                                         
Query: 491      ctgcactgggctaggattttcacgcaatcctcatcactcca 531
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11490868 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11490908



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 350      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 409
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11549413 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11549472

                                                                            
Query: 410      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 469
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11549473 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11549532

                                                               
Query: 470      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 516
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11549533 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11549579



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 547      cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 606
                ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 11494091 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11494150

                             
Query: 607      aatgactccatca 619
                || ||| ||||||
Sbjct: 11494151 aacgacaccatca 11494163



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 500      gctaggattttcacgcaatcctcatcactccaa 532
                ||||||||||||||||||||||  |||||||||
Sbjct: 11437487 gctaggattttcacgcaatcctggtcactccaa 11437519



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 248      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 303
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11294528 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11294583



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 251      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 309
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11353889 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11353947



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 492      tgcactgggctaggattttcacgcaatcctca 523
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11352249 tgcattgggctaggatcttcacgtaatcctca 11352280

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 3e-24
 Identities = 136/161 (84%)
 Strand = Plus / Plus

                                                                            
Query: 371      accatcatgagcatatccatcaggagttgggcttcaaacattactggccctaaggaaggt 430
                |||| ||| |||||||||||||  || |||||||||||||||||||| ||||  ||||||
Sbjct: 11569937 accaacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggt 11569996

                                                                            
Query: 431      ccaaccacaatctctatgattattacctttcccccctcctcccgcggaggaatggccttt 490
                |||||||  ||||||||||| || ||||| || |||||||| || |  ||||||||||||
Sbjct: 11569997 ccaaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggccttt 11570056

                                                         
Query: 491      ctgcactgggctaggattttcacgcaatcctcatcactcca 531
                |||||||| |  | ||| ||||||||||| ||||| |||||
Sbjct: 11570057 ctgcactgagtcaagatcttcacgcaatcatcatcgctcca 11570097



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 136/167 (81%)
 Strand = Plus / Plus

                                                                            
Query: 350      cgttgaccccctctcgtgttcaccatcatgagcatatccatcaggagttgggcttcaaac 409
                |||||||  ||||| || ||||||||||||||||| ||||||| ||| || ||||| |||
Sbjct: 11628602 cgttgacgacctctagtattcaccatcatgagcatgtccatcatgagctgcgcttcgaac 11628661

                                                                            
Query: 410      attactggccctaaggaaggtccaaccacaatctctatgattattacctttcccccctcc 469
                ||||| ||||| || || ||| ||||||  || |||||||  || | ||| || ||||||
Sbjct: 11628662 attacaggccccaaagatggttcaaccaagatatctatgacaatcaacttcccgccctcc 11628721

                                                               
Query: 470      tcccgcggaggaatggcctttctgcactgggctaggattttcacgca 516
                |  || | |||||| |||||| ||||||| |||||||| ||||||||
Sbjct: 11628722 tttcgtgaaggaatagcctttttgcactgagctaggatcttcacgca 11628768



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                            
Query: 547      cttgagcatcaccacttgagatggtgggacggtgtggaacaggtcacccgcgacatagtt 606
                ||||||||||||  ||||||  ||||| ||||||||||||| |||||| || ||||||||
Sbjct: 11573280 cttgagcatcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagtt 11573339

                             
Query: 607      aatgactccatca 619
                || ||| ||||||
Sbjct: 11573340 aacgacaccatca 11573352



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 500      gctaggattttcacgcaatcctcatcactccaa 532
                ||||||||||||||||||||||  |||||||||
Sbjct: 11516676 gctaggattttcacgcaatcctggtcactccaa 11516708



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 248      tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 303
                ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 11373717 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 11373772



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 251      gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 309
                ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 11433078 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 11433136



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 492      tgcactgggctaggattttcacgcaatcctca 523
                |||| ||||||||||| |||||| ||||||||
Sbjct: 11431438 tgcattgggctaggatcttcacgtaatcctca 11431469

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>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 514 gcaatcctcatcactccaaaagtgtagcacaagcttgagcatcaccacttgagatggtgg 573
           ||||||||| || ||||| |||||||| |||||||||||||| ||  | |||| ||||||
Sbjct: 248 gcaatcctcgtcgctccagaagtgtagaacaagcttgagcatgacggcctgagctggtgg 189

                                              
Query: 574 gacggtgtggaacaggtcacccgcgacatagttaa 608
           |||||| ||||| |||||||| |||||||||||||
Sbjct: 188 gacggtatggaagaggtcaccagcgacatagttaa 154

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>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 506 attttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagcatcaccacttga 565
           |||||||| |||||||| ||||||||   ||| ||||||||||||||||| ||  |||||
Sbjct: 915 attttcacacaatcctcgtcactccagtggtgaagcacaagcttgagcatgacagcttga 856

                                                    
Query: 566 gatggtgggacggtgtggaacaggtcacccgcgacatagtt 606
           |  ||||||| || | |||||| ||||||||| ||||||||
Sbjct: 855 gcaggtgggatggcgcggaacatgtcacccgctacatagtt 815

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>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 365 gtgttcaccatcatgagcatatccatcaggagttgggc 402
           |||||||||||||||||||| |||||||| || |||||
Sbjct: 991 gtgttcaccatcatgagcatgtccatcagcagctgggc 954

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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 248   tacgggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtc 303
             ||||| |||||||| |||||  | || | |||||||||||||||||| ||||||||
Sbjct: 80886 tacggatagacctcaatgacacaccgaggtcccaatttcttcacaatcttgtagtc 80941



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 251    gggtagacctcgatgactgatcgggctcccaatttcttcacaattttgtagtcagtgaa 309
              ||||||||||| | |||   ||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 140247 gggtagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaa 140305



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 492    tgcactgggctaggattttcacgcaatcctca 523
              |||| ||||||||||| |||||| ||||||||
Sbjct: 138607 tgcattgggctaggatcttcacgtaatcctca 138638

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>ref|XM_416865.1| PREDICTED: Gallus gallus similar to short stature homeobox isoform
           a; growth control factor, X-linked; pseudoautosomal
           homeobox-containing osteogenic gene (LOC418669), mRNA
          Length = 2100

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 458 tttcccccctcctcccgcggagg 480
           |||||||||||||||||||||||
Sbjct: 534 tttcccccctcctcccgcggagg 556

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>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 509 ttcacgcaatcctcatcactccaaaagtgtagcacaagcttgagca 554
           |||| ||| |||||||||||||||  |||||| |||| ||||||||
Sbjct: 821 ttcatgcagtcctcatcactccaatcgtgtaggacaaacttgagca 776

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>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 542 acaagcttgagcatcaccacttgagatggtgggacggtgtggaacaggtc 591
           |||||||||||||||||| | ||||    ||||||||||||||| |||||
Sbjct: 844 acaagcttgagcatcaccgcctgagcctttgggacggtgtggaagaggtc 795

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>ref|XM_471443.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1518

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 60   cattggagcacactaacatga 80
            |||||||||||||||||||||
Sbjct: 1310 cattggagcacactaacatga 1330

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>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence
          Length = 189032

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   gaaaaataagcacctccttta 222
             |||||||||||||||||||||
Sbjct: 69396 gaaaaataagcacctccttta 69416

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>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 82    aaacacatacatatgccaatataaa 106
             |||||||||||||||| ||||||||
Sbjct: 14370 aaacacatacatatgcaaatataaa 14346

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>gb|AC068910.45| Mus musculus strain C57BL/6J chromosome 9 clone rp23-9g9, complete
              sequence
          Length = 169984

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     aatataaagtgctttaatact 119
              |||||||||||||||||||||
Sbjct: 166964 aatataaagtgctttaatact 166944

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>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 201304

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    aatataaagtgctttaatact 119
             |||||||||||||||||||||
Sbjct: 64419 aatataaagtgctttaatact 64399

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>emb|Z50860.1|HSN76A1 Human DNA sequence from clone LL22NC03-76A1 on chromosome 22, complete
             sequence
          Length = 39246

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 562   ttgagatggtgggacggtgtg 582
             |||||||||||||||||||||
Sbjct: 31689 ttgagatggtgggacggtgtg 31709

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>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08,
             complete sequence
          Length = 142814

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    cattggagcacactaacatga 80
             |||||||||||||||||||||
Sbjct: 45974 cattggagcacactaacatga 45954

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 60       cattggagcacactaacatga 80
                |||||||||||||||||||||
Sbjct: 11037319 cattggagcacactaacatga 11037299

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>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family
              from Zea mays, complete sequence
          Length = 116115

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 319    cttaaatagctcacaccagtg 339
              |||||||||||||||||||||
Sbjct: 109765 cttaaatagctcacaccagtg 109785

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>dbj|AK105688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C01, full
            insert sequence
          Length = 2002

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 60   cattggagcacactaacatga 80
            |||||||||||||||||||||
Sbjct: 1578 cattggagcacactaacatga 1598

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>dbj|AK065632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028E03, full
            insert sequence
          Length = 2023

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 60   cattggagcacactaacatga 80
            |||||||||||||||||||||
Sbjct: 1583 cattggagcacactaacatga 1603

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>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete
             sequence
          Length = 203615

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    aatataaagtgctttaatact 119
             |||||||||||||||||||||
Sbjct: 38302 aatataaagtgctttaatact 38282

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>gb|AC074314.29| 433m13, complete sequence
          Length = 209644

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 99     aatataaagtgctttaatact 119
              |||||||||||||||||||||
Sbjct: 155135 aatataaagtgctttaatact 155115

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>emb|CR786572.20| Zebrafish DNA sequence from clone DKEY-258F14 in linkage group 8,
             complete sequence
          Length = 137717

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cctttatttttacctttaaa 236
             ||||||||||||||||||||
Sbjct: 20649 cctttatttttacctttaaa 20630

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>emb|Z92844.3|HS435C23 Human DNA sequence from clone RP3-435C23 on chromosome Xp21-22,
             complete sequence
          Length = 158849

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   cctttatttttacctttaaa 236
             ||||||||||||||||||||
Sbjct: 98669 cctttatttttacctttaaa 98688

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>gb|AC012588.14| Homo sapiens chromosome 18, clone RP11-17A19, complete sequence
          Length = 148738

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 83    aacacatacatatgccaatataaa 106
             |||| |||||||||||||||||||
Sbjct: 37283 aacaaatacatatgccaatataaa 37306

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>gb|AC090206.7| Homo sapiens chromosome 18, clone RP11-349H17, complete sequence
          Length = 91609

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 83    aacacatacatatgccaatataaa 106
             |||| |||||||||||||||||||
Sbjct: 59103 aacaaatacatatgccaatataaa 59126

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>gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, complete sequence
          Length = 133531

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   cctcctttatttttaccttt 233
             ||||||||||||||||||||
Sbjct: 58662 cctcctttatttttaccttt 58681

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>dbj|AK163573.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230384C07
           product:hypothetical Interferon-induced transmembrane
           protein containing protein, full insert sequence
          Length = 1159

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 cgggtagacctcgatgactg 269
           ||||||||||||||||||||
Sbjct: 451 cgggtagacctcgatgactg 432

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>emb|BX682555.6| Zebrafish DNA sequence from clone DKEY-217L10 in linkage group 3,
             complete sequence
          Length = 69193

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   gaacattcccttagaaaaat 208
             ||||||||||||||||||||
Sbjct: 15225 gaacattcccttagaaaaat 15244

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>gb|AC152165.2| Mus musculus BAC clone RP24-159A20 from chromosome 5, complete sequence
          Length = 194519

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     acatgacaaacacatacata 94
              ||||||||||||||||||||
Sbjct: 172945 acatgacaaacacatacata 172964

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>dbj|AK045822.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230312J21
           product:hypothetical protein, full insert sequence
          Length = 3235

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 cgggtagacctcgatgactg 269
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431

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>gb|BC049666.1| Mus musculus RIKEN cDNA 6330512M04 gene, mRNA (cDNA clone MGC:58491
           IMAGE:6534368), complete cds
          Length = 1184

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 cgggtagacctcgatgactg 269
           ||||||||||||||||||||
Sbjct: 439 cgggtagacctcgatgactg 420

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>gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, complete sequence
          Length = 191594

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     actacaagcacacaccattg 64
              ||||||||||||||||||||
Sbjct: 120170 actacaagcacacaccattg 120151

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>gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, RP23-145I16, complete
             sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   cgggtagacctcgatgactg 269
             ||||||||||||||||||||
Sbjct: 36179 cgggtagacctcgatgactg 36160

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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 401     gcttcaaacattactggccctaag 424
               |||||||||||| |||||||||||
Sbjct: 1998540 gcttcaaacatttctggccctaag 1998563

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>gb|AY110678.1| Zea mays CL33606_1 mRNA sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 485 gcctttctgcactgggctaggattttcacgcaatcctcatcact 528
           ||||| ||||| | ||| ||||| |||||||| |||||||||||
Sbjct: 570 gccttcctgcagttggcaaggatcttcacgcagtcctcatcact 613

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>emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 in linkage group 8,
              complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 220    ttatttttacctttaaagcacaat 243
              ||||||||| ||||||||||||||
Sbjct: 106666 ttatttttaactttaaagcacaat 106689

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>dbj|AK113383.1| Ciona intestinalis cDNA, clone:cieg001j23, full insert sequence
          Length = 2040

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   aacaatactatataagccga 38
            ||||||||||||||||||||
Sbjct: 1982 aacaatactatataagccga 2001

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>ref|NM_177265.2| Mus musculus RIKEN cDNA 6330512M04 gene (6330512M04Rik), mRNA
          Length = 3235

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 cgggtagacctcgatgactg 269
           ||||||||||||||||||||
Sbjct: 450 cgggtagacctcgatgactg 431

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>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170,
             complete sequence
          Length = 101172

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tgaagcaactaatctttata 165
             ||||||||||||||||||||
Sbjct: 82781 tgaagcaactaatctttata 82800

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>emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chromosome 7, complete
              sequence
          Length = 205942

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    cgggtagacctcgatgactg 269
              ||||||||||||||||||||
Sbjct: 164428 cgggtagacctcgatgactg 164409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,928,878
Number of Sequences: 3902068
Number of extensions: 5928878
Number of successful extensions: 115103
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 114868
Number of HSP's gapped (non-prelim): 234
length of query: 638
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 615
effective length of database: 17,143,297,704
effective search space: 10543128087960
effective search space used: 10543128087960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result