Clone Information

BLAST Search Result

Clone Name	rbags30g20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK101609.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	412	e-112
2	gb\|AY224459.1\| Oryza sativa (japonica cultivar-group) isolate 23...	406	e-110
3	gb\|AY596557.1\| Saccharum officinarum clone SCCCCL3120B05, comple...	327	3e-86
4	gb\|BT017305.1\| Zea mays clone EL01N0316E09.c mRNA sequence	266	9e-68
5	gb\|AY103781.1\| Zea mays PCO113646 mRNA sequence	266	9e-68
6	gb\|AC130729.3\| Oryza sativa (japonica cultivar-group) chromosome...	198	2e-47
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	198	2e-47
8	gb\|BT018581.1\| Zea mays clone EL01N0446A04.d mRNA sequence	125	2e-25
9	emb\|AL772228.5\| Mouse DNA sequence from clone RP23-236D1 on chro...	48	0.039
10	emb\|CR627496.8\| Zebrafish DNA sequence from clone DKEY-223G10 in...	46	0.15
11	ref\|XM_393332.2\| PREDICTED: Apis mellifera similar to GH03617p (...	46	0.15
12	gb\|AC011364.4\| Homo sapiens chromosome 5 clone CTC-529P8, comple...	44	0.61
13	gb\|AC122399.4\| Mus musculus BAC clone RP24-92B2 from chromosome ...	42	2.4
14	emb\|CR932438.14\| Zebrafish DNA sequence from clone DKEY-250O4 in...	42	2.4
15	emb\|BX901973.12\| Zebrafish DNA sequence from clone DKEY-26L17 in...	42	2.4
16	gb\|AC126007.16\| Medicago truncatula clone mth2-11o4, complete se...	42	2.4
17	gb\|AC103785.4\| Homo sapiens chromosome 8, clone RP11-727C12, com...	42	2.4
18	emb\|BX927129.10\| Zebrafish DNA sequence from clone DKEY-158N21 i...	42	2.4
19	gb\|AC096543.2\| Homo sapiens chromosome 1 clone RP11-335E6, compl...	42	2.4
20	emb\|AL935282.14\| Zebrafish DNA sequence from clone CH211-281O21 ...	42	2.4
21	gb\|AC153383.1\| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cance...	40	9.5
22	gb\|AC005687.1\| Arabidopsis thaliana BAC F1I21 from chromosome 1,...	40	9.5
23	gb\|AC102205.8\| Mus musculus chromosome 7, clone RP24-194L15, com...	40	9.5
24	gb\|AC167724.6\| Mus musculus 10 BAC RP23-331P17 (Roswell Park Can...	40	9.5
25	gb\|AC161440.8\| Mus musculus chromosome 7, clone RP23-309B10, com...	40	9.5
26	gb\|AC134546.4\| Mus musculus BAC clone RP24-471H17 from chromosom...	40	9.5
27	ref\|XM_391681.1\| Gibberella zeae PH-1 chromosome linkage group 1...	40	9.5
28	emb\|AL807378.5\| Zebrafish DNA sequence from clone CH211-215A18 i...	40	9.5
29	gb\|AC090160.6\| Homo sapiens chromosome 11, clone RP11-413N10, co...	40	9.5
30	emb\|BX323842.8\| Zebrafish DNA sequence from clone CH211-1M7, com...	40	9.5
31	gb\|AC100875.3\| Homo sapiens chromosome 11, clone RP11-715M10, co...	40	9.5
32	gb\|AC068303.10\| Homo sapiens 3 BAC RP11-324H4 (Roswell Park Canc...	40	9.5
33	gb\|AC021889.29\| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Canc...	40	9.5
34	gb\|AC155909.9\| Mus musculus 10 BAC RP24-477D23 (Roswell Park Can...	40	9.5
35	gb\|CP000033.1\| Lactobacillus acidophilus NCFM, complete genome	40	9.5
36	emb\|CR352301.7\| Zebrafish DNA sequence from clone CH211-147A11 i...	40	9.5
37	emb\|BX571830.6\| Zebrafish DNA sequence from clone DKEY-261I16 in...	40	9.5
38	emb\|CR376851.5\| Zebrafish DNA sequence from clone DKEY-48N5 in l...	40	9.5
39	emb\|BX005306.20\| Zebrafish DNA sequence from clone DKEY-78C7 in ...	40	9.5
40	dbj\|AP001148.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	9.5
41	emb\|CR936328.1\| Medicago truncatula chromosome 5 clone mth4-1f18...	40	9.5
42	dbj\|D88448.1\| Grapevine berry inner necrosis virus genes for RNA...	40	9.5

>dbj|AK101609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052B11, full
            insert sequence
          Length = 1339

 Score =  412 bits (208), Expect = e-112
 Identities = 467/552 (84%), Gaps = 6/552 (1%)
 Strand = Plus / Minus

                                                                        
Query: 141  ccaggaagtagcatctcctagccatggttgaaggactggtacaccggaacctgagaaatc 200
            |||| |||||| |||||  |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1186 ccagcaagtaggatctctcagccatggttgaaggactggtaaaccggaacctgagaaatc 1127

                                                                        
Query: 201  acatggccaagattgtcgtagcaatggggatacatcattgctggggtaggccattgtggg 260
            | ||| ||||||||||| ||||||||||| || ||||||||||| || ||||| ||||||
Sbjct: 1126 atatgcccaagattgtcatagcaatgggggtatatcattgctggagttggccactgtggg 1067

                                                                        
Query: 261  taaacagtagttccagaa---gaccccatcgataaatcaggttgaccaaagtacacagga 317
            || |||| ||||||||||   || ||||| |||||||| ||||| ||||||||||||| |
Sbjct: 1066 tagacagcagttccagaagaggagcccatagataaatcgggttggccaaagtacacagaa 1007

                                                                        
Query: 318  ggttggtttctcggcatgctaggagactgcatataaccgacaccatactgcataaactga 377
            ||||||||||| | |||  ||| |||||||||| |||| |||||||||||||||||||| 
Sbjct: 1006 ggttggtttcttgacatattagcagactgcataaaaccaacaccatactgcataaactgt 947

                                                                        
Query: 378  ggcacagcaaaattgaaggcgcctgggctcacaccataatcaggcacggggggcctaaca 437
            |||||| ||||||||||| | || || ||||||    | ||  |||| |||  |||||||
Sbjct: 946  ggcacaacaaaattgaagccaccaggactcacattgaagtcgtgcactgggcccctaaca 887

                                                                        
Query: 438  taccttttgtagttacgatcgtagtcaggatcactacgatctttttcagcgtccttaaaa 497
            ||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||||||
Sbjct: 886  tacctcttgtagttacgatcatagtcaggatcactacgatccttttcagtgtccttaaaa 827

                                                                        
Query: 498  acagcaaccctggaacggctattgaacgtgcagcccttgttctcatcaacagaaggctca 557
            |||||||| ||||||||||| || |  |||    |||| ||||||||||||| |||||||
Sbjct: 826  acagcaactctggaacggctgttcattgtgttcaccttattctcatcaacaggaggctca 767

                                                                        
Query: 558  acattcaccggttcatttctggcaatggacagagctccaaaatcacttgggcctacgaca 617
            ||||| |  ||||||| ||| ||||  || | |||||| |||||||||| |||| | | |
Sbjct: 766  acattaattggttcatctctcgcaacagataaagctcccaaatcacttgtgccttcaata 707

                                                                        
Query: 618  tctgcaggaatggaaccattgaaaatgcgcgctcgtgccttattgtaatcatctatcctc 677
            |   ||| ||||||||| ||||||||||| |||||||| || ||||| || |||||||||
Sbjct: 706  t---cagaaatggaaccgttgaaaatgcgtgctcgtgctttgttgtattcctctatcctc 650

                        
Query: 678  tcttcaacagtt 689
            ||||||||||||
Sbjct: 649  tcttcaacagtt 638

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>gb|AY224459.1| Oryza sativa (japonica cultivar-group) isolate 23495 unknown mRNA
          Length = 1008

 Score =  406 bits (205), Expect = e-110
 Identities = 452/533 (84%), Gaps = 6/533 (1%)
 Strand = Plus / Minus

                                                                        
Query: 160  agccatggttgaaggactggtacaccggaacctgagaaatcacatggccaagattgtcgt 219
            |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |
Sbjct: 1006 agccatggttgaaggactggtaaaccggaacctgagaaatcatatgcccaagattgtcat 947

                                                                        
Query: 220  agcaatggggatacatcattgctggggtaggccattgtgggtaaacagtagttccagaa- 278
            |||||||||| || ||||||||||| || ||||| |||||||| |||| |||||||||| 
Sbjct: 946  agcaatgggggtatatcattgctggagttggccactgtgggtagacagcagttccagaag 887

                                                                        
Query: 279  --gaccccatcgataaatcaggttgaccaaagtacacaggaggttggtttctcggcatgc 336
              || ||||| |||||||| ||||| ||||||||||||| |||||||||||| | |||  
Sbjct: 886  aggagcccatagataaatcgggttggccaaagtacacagaaggttggtttcttgacatat 827

                                                                        
Query: 337  taggagactgcatataaccgacaccatactgcataaactgaggcacagcaaaattgaagg 396
            ||| |||||||||| |||| |||||||||||||||||||| |||||| ||||||||||| 
Sbjct: 826  tagcagactgcataaaaccaacaccatactgcataaactgtggcacaacaaaattgaagc 767

                                                                        
Query: 397  cgcctgggctcacaccataatcaggcacggggggcctaacataccttttgtagttacgat 456
            | || || ||||||    | ||  |||| |||  |||||||||||| |||||||||||||
Sbjct: 766  caccaggactcacattgaagtcgtgcactgggcccctaacatacctcttgtagttacgat 707

                                                                        
Query: 457  cgtagtcaggatcactacgatctttttcagcgtccttaaaaacagcaaccctggaacggc 516
            | |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||
Sbjct: 706  catagtcaggatcactacgatccttttcagtgtccttaaaaacagcaactctggaacggc 647

                                                                        
Query: 517  tattgaacgtgcagcccttgttctcatcaacagaaggctcaacattcaccggttcatttc 576
            | || |  |||    |||| ||||||||||||| |||||||||||| |  ||||||| ||
Sbjct: 646  tgttcattgtgttcaccttattctcatcaacaggaggctcaacattaattggttcatctc 587

                                                                        
Query: 577  tggcaatggacagagctccaaaatcacttgggcctacgacatctgcaggaatggaaccat 636
            | ||||  || | |||||| |||||||||| |||| | | ||   ||| ||||||||| |
Sbjct: 586  tcgcaacagataaagctcccaaatcacttgtgccttcaatat---cagaaatggaaccgt 530

                                                                 
Query: 637  tgaaaatgcgcgctcgtgccttattgtaatcatctatcctctcttcaacagtt 689
            |||||||||| |||||||| || ||||| || |||||||||||||||||||||
Sbjct: 529  tgaaaatgcgtgctcgtgctttgttgtattcctctatcctctcttcaacagtt 477

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>gb|AY596557.1| Saccharum officinarum clone SCCCCL3120B05, complete sequence
          Length = 1460

 Score =  327 bits (165), Expect = 3e-86
 Identities = 448/539 (83%), Gaps = 5/539 (0%)
 Strand = Plus / Minus

                                                                        
Query: 157  cctagccatggttgaaggactggtacaccggaacctgagaaatcacatggccaagattgt 216
            |||| ||||||||||| || |||||||  ||||||||||| ||||   | |||| ||| |
Sbjct: 1237 cctaaccatggttgaaagattggtacagaggaacctgagagatcattggaccaacattat 1178

                                                                        
Query: 217  cgtagcaatggggatacatcattgctggggtaggccattgtgggtaaacagtagttccag 276
            | |||||||||||||||||||||||||| || ||||| ||||||||||||| || |||||
Sbjct: 1177 catagcaatggggatacatcattgctggcgttggccaatgtgggtaaacagcagctccag 1118

                                                                        
Query: 277  aaga---ccccatcgataaatcaggttgaccaaagtacacaggaggttggtttctcggca 333
            ||||   |||||| | || |||||| || ||||||||||||| ||| ||||||   | ||
Sbjct: 1117 aagaagaccccattgctagatcaggctggccaaagtacacagtaggctggtttgaggaca 1058

                                                                        
Query: 334  tgctaggagactgcatataaccgacaccatactgcataaactgaggcacagcaaaattga 393
            ||| |||||| |||| |||||| || || ||||||||||||||||||||| |||| ||||
Sbjct: 1057 tgccaggagattgcacataaccaacgccgtactgcataaactgaggcacaacaaagttga 998

                                                                        
Query: 394  aggcgcctgggctcacaccataatcaggcacggggggcctaacataccttttgtagttac 453
            |||| ||||||||||      | |||||||| |||  ||||||||||||| ||||||| |
Sbjct: 997  aggcacctgggctcaagttgaagtcaggcactgggctcctaacataccttgtgtagtttc 938

                                                                        
Query: 454  gatcgtagtcaggatcactacgatctttttcagcgtccttaaaaacagcaaccctggaac 513
            |||||||||| || ||||||||||| |||||||  ||||||||||||||||| |||||||
Sbjct: 937  gatcgtagtctgggtcactacgatccttttcagtatccttaaaaacagcaactctggaac 878

                                                                        
Query: 514  ggctattgaacgtgcagcccttgttctcatcaacagaaggctcaacattcaccggttcat 573
            |||| || |  |||| | | ||| | ||||||||||||||||||||||| || || ||||
Sbjct: 877  ggctgttcattgtgctgactttgatttcatcaacagaaggctcaacatttactggctcat 818

                                                                        
Query: 574  ttctggcaatggacagagctccaaaatcacttg-ggcctacgacatctgcaggaatggaa 632
             |||| || |||| |||| ||| ||| ||||||  || |  || |||||||| |||||||
Sbjct: 817  ctctgccagtggaaagagttcccaaaacacttgcagcatcaga-atctgcagaaatggaa 759

                                                                       
Query: 633  ccattgaaaatgcgcgctcgtgccttattgtaatcatctatcctctcttcaacagtttt 691
            |||||||| |||||||||||||| ||||| || || ||||| |||||||||||||||||
Sbjct: 758  ccattgaagatgcgcgctcgtgctttattatattcctctattctctcttcaacagtttt 700

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>gb|BT017305.1| Zea mays clone EL01N0316E09.c mRNA sequence
          Length = 1435

 Score =  266 bits (134), Expect = 9e-68
 Identities = 441/540 (81%), Gaps = 5/540 (0%)
 Strand = Plus / Minus

                                                                        
Query: 153  atctcctagccatggttgaaggactggtacaccggaacctgagaaatcacatggccaaga 212
            |||| ||| ||||||||||| || |||||||  ||||||||||||||||     |||| |
Sbjct: 1192 atctactaaccatggttgaaagattggtacagaggaacctgagaaatcattgaaccaaca 1133

                                                                        
Query: 213  ttgtcgtagcaatggggatacatcattgctggggtaggccattgtgggtaaacagtagtt 272
            ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
Sbjct: 1132 ttgtcatagcaatggggatacatcattgctggggttggccaatgtgggtaaacagcagct 1073

                                                                        
Query: 273  ccagaagaccccatcgataaatcaggttgaccaaagtacacaggaggttggtttctcggc 332
            |||||||||||||| | || |||||| || |||||||| |||| ||| |||||| | | |
Sbjct: 1072 ccagaagaccccattgttagatcaggctggccaaagtagacagcaggctggtttgtagac 1013

                                                                        
Query: 333  atgctaggagactgcatataaccgacaccatactgcataaactgaggcacagcaaaattg 392
            |||| |||||| |||| |||||| || ||||||||||||||||||||||   |||| |||
Sbjct: 1012 atgccaggagattgcacataaccaacgccatactgcataaactgaggca---caaagttg 956

                                                                        
Query: 393  aaggcgcctgggctcacaccataatcaggcacggggggcctaacataccttttgtagtta 452
            ||||| ||||||||||      | ||||| || |||  ||||||||||||||||||||| 
Sbjct: 955  aaggcacctgggctcaagttgaagtcaggaactgggctcctaacataccttttgtagttt 896

                                                                        
Query: 453  cgatcgtagtcaggatcactacgatctttttcagcgtccttaaaaacagcaaccctggaa 512
            ||||| || || || ||||| ||||| |||| ||  ||||| ||||||||||| ||||||
Sbjct: 895  cgatcataatctgggtcactgcgatccttttgagtatccttgaaaacagcaactctggaa 836

                                                                        
Query: 513  cggctattgaacgtgcagcccttgttctcatcaacagaaggctcaacattcaccggttca 572
            ||| | || | ||||| | | ||| | |||||||||||||| |||||||| || |  |||
Sbjct: 835  cggttgttcatcgtgctgactttgatttcatcaacagaaggttcaacatttactgactca 776

                                                                        
Query: 573  tttctggcaatggacagagctccaaaatcacttg-ggcctacgacatctgcaggaatgga 631
            | |||| || || | |||| ||| ||| ||||||  || |  || |||||||| ||  ||
Sbjct: 775  tctctgccagtgcaaagagttcccaaaacacttgcagcatcaga-atctgcagaaacaga 717

                                                                        
Query: 632  accattgaaaatgcgcgctcgtgccttattgtaatcatctatcctctcttcaacagtttt 691
            ||||||||| ||||| |||||||| ||||| || || ||||| |||||||||||||||||
Sbjct: 716  accattgaagatgcgtgctcgtgctttattatattcctctattctctcttcaacagtttt 657

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>gb|AY103781.1| Zea mays PCO113646 mRNA sequence
          Length = 1654

 Score =  266 bits (134), Expect = 9e-68
 Identities = 441/540 (81%), Gaps = 5/540 (0%)
 Strand = Plus / Minus

                                                                        
Query: 153  atctcctagccatggttgaaggactggtacaccggaacctgagaaatcacatggccaaga 212
            |||| ||| ||||||||||| || |||||||  ||||||||||||||||     |||| |
Sbjct: 1384 atctactaaccatggttgaaagattggtacagaggaacctgagaaatcattgaaccaaca 1325

                                                                        
Query: 213  ttgtcgtagcaatggggatacatcattgctggggtaggccattgtgggtaaacagtagtt 272
            ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| || |
Sbjct: 1324 ttgtcatagcaatggggatacatcattgctggggttggccaatgtgggtaaacagcagct 1265

                                                                        
Query: 273  ccagaagaccccatcgataaatcaggttgaccaaagtacacaggaggttggtttctcggc 332
            |||||||||||||| | || |||||| || |||||||| |||| ||| |||||| | | |
Sbjct: 1264 ccagaagaccccattgttagatcaggctggccaaagtagacagcaggctggtttgtagac 1205

                                                                        
Query: 333  atgctaggagactgcatataaccgacaccatactgcataaactgaggcacagcaaaattg 392
            |||| |||||| |||| |||||| || ||||||||||||||||||||||   |||| |||
Sbjct: 1204 atgccaggagattgcacataaccaacgccatactgcataaactgaggca---caaagttg 1148

                                                                        
Query: 393  aaggcgcctgggctcacaccataatcaggcacggggggcctaacataccttttgtagtta 452
            ||||| ||||||||||      | ||||| || |||  ||||||||||||||||||||| 
Sbjct: 1147 aaggcacctgggctcaagttgaagtcaggaactgggctcctaacataccttttgtagttt 1088

                                                                        
Query: 453  cgatcgtagtcaggatcactacgatctttttcagcgtccttaaaaacagcaaccctggaa 512
            ||||| || || || ||||| ||||| |||| ||  ||||| ||||||||||| ||||||
Sbjct: 1087 cgatcataatctgggtcactgcgatccttttgagtatccttgaaaacagcaactctggaa 1028

                                                                        
Query: 513  cggctattgaacgtgcagcccttgttctcatcaacagaaggctcaacattcaccggttca 572
            ||| | || | ||||| | | ||| | |||||||||||||| |||||||| || |  |||
Sbjct: 1027 cggttgttcatcgtgctgactttgatttcatcaacagaaggttcaacatttactgactca 968

                                                                        
Query: 573  tttctggcaatggacagagctccaaaatcacttg-ggcctacgacatctgcaggaatgga 631
            | |||| || || | |||| ||| ||| ||||||  || |  || |||||||| ||  ||
Sbjct: 967  tctctgccagtgcaaagagttcccaaaacacttgcagcatcaga-atctgcagaaacaga 909

                                                                        
Query: 632  accattgaaaatgcgcgctcgtgccttattgtaatcatctatcctctcttcaacagtttt 691
            ||||||||| ||||| |||||||| ||||| || || ||||| |||||||||||||||||
Sbjct: 908  accattgaagatgcgtgctcgtgctttattatattcctctattctctcttcaacagtttt 849

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>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02,
              complete sequence
          Length = 178061

 Score =  198 bits (100), Expect = 2e-47
 Identities = 183/210 (87%), Gaps = 3/210 (1%)
 Strand = Plus / Minus

                                                                          
Query: 189    acctgagaaatcacatggccaagattgtcgtagcaatggggatacatcattgctggggta 248
              ||||||||||||| ||| ||||||||||| ||||||||||| || ||||||||||| || 
Sbjct: 126606 acctgagaaatcatatgcccaagattgtcatagcaatgggggtatatcattgctggagtt 126547

                                                                          
Query: 249    ggccattgtgggtaaacagtagttccagaagac---cccatcgataaatcaggttgacca 305
              ||||| |||||||| |||| ||||||||||||    ||||| |||||||| ||||| |||
Sbjct: 126546 ggccactgtgggtagacagcagttccagaagaggagcccatagataaatcgggttggcca 126487

                                                                          
Query: 306    aagtacacaggaggttggtttctcggcatgctaggagactgcatataaccgacaccatac 365
              |||||||||| |||||||||||| | |||  ||| |||||||||| |||| |||||||||
Sbjct: 126486 aagtacacagaaggttggtttcttgacatattagcagactgcataaaaccaacaccatac 126427

                                            
Query: 366    tgcataaactgaggcacagcaaaattgaag 395
              ||||||||||| |||||| |||||||||||
Sbjct: 126426 tgcataaactgtggcacaacaaaattgaag 126397



 Score =  184 bits (93), Expect = 3e-43
 Identities = 212/251 (84%), Gaps = 3/251 (1%)
 Strand = Plus / Minus

                                                                          
Query: 439    accttttgtagttacgatcgtagtcaggatcactacgatctttttcagcgtccttaaaaa 498
              |||| |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct: 126269 acctcttgtagttacgatcatagtcaggatcactacgatccttttcagtgtccttaaaaa 126210

                                                                          
Query: 499    cagcaaccctggaacggctattgaacgtgcagcccttgttctcatcaacagaaggctcaa 558
              ||||||| ||||||||||| || |  |||    |||| ||||||||||||| ||||||||
Sbjct: 126209 cagcaactctggaacggctgttcattgtgttcaccttattctcatcaacaggaggctcaa 126150

                                                                          
Query: 559    cattcaccggttcatttctggcaatggacagagctccaaaatcacttgggcctacgacat 618
              |||| |  ||||||| ||| ||||  || | |||||| |||||||||| |||| | | ||
Sbjct: 126149 cattaattggttcatctctcgcaacagataaagctcccaaatcacttgtgccttcaatat 126090

                                                                          
Query: 619    ctgcaggaatggaaccattgaaaatgcgcgctcgtgccttattgtaatcatctatcctct 678
                 ||| ||||||||| ||||||||||| |||||||| || ||||| || ||||||||||
Sbjct: 126089 ---cagaaatggaaccgttgaaaatgcgtgctcgtgctttgttgtattcctctatcctct 126033

                         
Query: 679    cttcaacagtt 689
              |||||||||||
Sbjct: 126032 cttcaacagtt 126022



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                   
Query: 141    ccaggaagtagcatctcctagccatggttgaaggactggtacaccggaacctg 193
              |||| |||||| |||||  |||||||||||||||||||||| |||||||||||
Sbjct: 127158 ccagcaagtaggatctctcagccatggttgaaggactggtaaaccggaacctg 127106

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  198 bits (100), Expect = 2e-47
 Identities = 183/210 (87%), Gaps = 3/210 (1%)
 Strand = Plus / Minus

                                                                            
Query: 189      acctgagaaatcacatggccaagattgtcgtagcaatggggatacatcattgctggggta 248
                ||||||||||||| ||| ||||||||||| ||||||||||| || ||||||||||| || 
Sbjct: 19985444 acctgagaaatcatatgcccaagattgtcatagcaatgggggtatatcattgctggagtt 19985385

                                                                            
Query: 249      ggccattgtgggtaaacagtagttccagaagac---cccatcgataaatcaggttgacca 305
                ||||| |||||||| |||| ||||||||||||    ||||| |||||||| ||||| |||
Sbjct: 19985384 ggccactgtgggtagacagcagttccagaagaggagcccatagataaatcgggttggcca 19985325

                                                                            
Query: 306      aagtacacaggaggttggtttctcggcatgctaggagactgcatataaccgacaccatac 365
                |||||||||| |||||||||||| | |||  ||| |||||||||| |||| |||||||||
Sbjct: 19985324 aagtacacagaaggttggtttcttgacatattagcagactgcataaaaccaacaccatac 19985265

                                              
Query: 366      tgcataaactgaggcacagcaaaattgaag 395
                ||||||||||| |||||| |||||||||||
Sbjct: 19985264 tgcataaactgtggcacaacaaaattgaag 19985235



 Score =  184 bits (93), Expect = 3e-43
 Identities = 212/251 (84%), Gaps = 3/251 (1%)
 Strand = Plus / Minus

                                                                            
Query: 439      accttttgtagttacgatcgtagtcaggatcactacgatctttttcagcgtccttaaaaa 498
                |||| |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct: 19985107 acctcttgtagttacgatcatagtcaggatcactacgatccttttcagtgtccttaaaaa 19985048

                                                                            
Query: 499      cagcaaccctggaacggctattgaacgtgcagcccttgttctcatcaacagaaggctcaa 558
                ||||||| ||||||||||| || |  |||    |||| ||||||||||||| ||||||||
Sbjct: 19985047 cagcaactctggaacggctgttcattgtgttcaccttattctcatcaacaggaggctcaa 19984988

                                                                            
Query: 559      cattcaccggttcatttctggcaatggacagagctccaaaatcacttgggcctacgacat 618
                |||| |  ||||||| ||| ||||  || | |||||| |||||||||| |||| | | ||
Sbjct: 19984987 cattaattggttcatctctcgcaacagataaagctcccaaatcacttgtgccttcaatat 19984928

                                                                            
Query: 619      ctgcaggaatggaaccattgaaaatgcgcgctcgtgccttattgtaatcatctatcctct 678
                   ||| ||||||||| ||||||||||| |||||||| || ||||| || ||||||||||
Sbjct: 19984927 ---cagaaatggaaccgttgaaaatgcgtgctcgtgctttgttgtattcctctatcctct 19984871

                           
Query: 679      cttcaacagtt 689
                |||||||||||
Sbjct: 19984870 cttcaacagtt 19984860



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 141      ccaggaagtagcatctcctagccatggttgaaggactggtacaccggaacctg 193
                |||| |||||| |||||  |||||||||||||||||||||| |||||||||||
Sbjct: 19985996 ccagcaagtaggatctctcagccatggttgaaggactggtaaaccggaacctg 19985944

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>gb|BT018581.1| Zea mays clone EL01N0446A04.d mRNA sequence
          Length = 1555

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                       
Query: 431 cctaacataccttttgtagttacgatcgtagtcaggatcactacgatctttttcagcgtc 490
           ||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||  ||
Sbjct: 918 cctaacataccttttgtagtttcgatcgtagtctgggtcactacgatccttttcagtatc 859

                                                                       
Query: 491 cttaaaaacagcaaccctggaacggctattgaacgtgcagcccttgttctcatcaacaga 550
           ||||||||||||||| |||||||| || || |  |||| | | ||| | |||||||||||
Sbjct: 858 cttaaaaacagcaactctggaacgactgttcattgtgctgactttgatttcatcaacaga 799

                                  
Query: 551 aggctcaacattcaccggttcat 573
           ||| |||||||| || |||||||
Sbjct: 798 agggtcaacatttactggttcat 776



 Score =  121 bits (61), Expect = 3e-24
 Identities = 194/237 (81%), Gaps = 1/237 (0%)
 Strand = Plus / Minus

                                                                        
Query: 153  atctcctagccatggttgaaggactggtacaccggaacctgagaaatcacatggccaaga 212
            ||||||||  |||||||||| ||||||||||  ||||||||||| ||||   | | || |
Sbjct: 1197 atctcctaatcatggttgaaagactggtacagaggaacctgagacatcattggactaaca 1138

                                                                        
Query: 213  ttgtcgtagcaatgggg-atacatcattgctggggtaggccattgtgggtaaacagtagt 271
            || || ||||||||||| ||||||||||| |||||| ||||| ||| | ||||||| || 
Sbjct: 1137 ttatcatagcaatgggggatacatcattgttggggttggccaatgtcgataaacagcagc 1078

                                                                        
Query: 272  tccagaagaccccatcgataaatcaggttgaccaaagtacacaggaggttggtttctcgg 331
            || ||||||||| || | || |||||| || |||||||||| || | | |||||| | | 
Sbjct: 1077 tctagaagaccctattgttagatcaggctggccaaagtacatagtatgctggtttgtgga 1018

                                                                     
Query: 332  catgctaggagactgcatataaccgacaccatactgcataaactgaggcacagcaaa 388
            ||||| |||||| |||| |||||| |  |||||||||||||||||||||||| ||||
Sbjct: 1017 catgccaggagattgcacataaccaatgccatactgcataaactgaggcacaacaaa 961



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                       
Query: 617 atctgcaggaatggaaccattgaaaatgcgcgctcgtgccttattgtaatcatctatcct 676
           |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 732 atctgcagaaatggaaccattgaagatgcgtgctcgtgctttattatattcctctattct 673

                          
Query: 677 ctcttcaacagtttt 691
           ||| ||||| |||||
Sbjct: 672 ctcatcaacggtttt 658

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>emb|AL772228.5| Mouse DNA sequence from clone RP23-236D1 on chromosome 4, complete
              sequence
          Length = 167555

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 1      caataacaataataaatattctta 24
              ||||||||||||||||||||||||
Sbjct: 105408 caataacaataataaatattctta 105385

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>emb|CR627496.8| Zebrafish DNA sequence from clone DKEY-223G10 in linkage group 17,
            complete sequence
          Length = 154593

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    caataacaataataaatattctt 23
            |||||||||||||||||||||||
Sbjct: 9536 caataacaataataaatattctt 9558

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>ref|XM_393332.2| PREDICTED: Apis mellifera similar to GH03617p (LOC409841), mRNA
          Length = 2610

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 111  gcaggttttaacaaattttgttc 133
            |||||||||||||||||||||||
Sbjct: 2251 gcaggttttaacaaattttgttc 2273

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>gb|AC011364.4| Homo sapiens chromosome 5 clone CTC-529P8, complete sequence
          Length = 122394

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 369   ataaactgaggcacagcaaaat 390
             ||||||||||||||||||||||
Sbjct: 72861 ataaactgaggcacagcaaaat 72882

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>gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome 17, complete sequence
          Length = 184002

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 367   gcataaactgaggcacagcaa 387
             |||||||||||||||||||||
Sbjct: 36447 gcataaactgaggcacagcaa 36467

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>emb|CR932438.14| Zebrafish DNA sequence from clone DKEY-250O4 in linkage group 13,
             complete sequence
          Length = 56325

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   gttttaacaaattttgttcca 135
             |||||||||||||||||||||
Sbjct: 51099 gttttaacaaattttgttcca 51079

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>emb|BX901973.12| Zebrafish DNA sequence from clone DKEY-26L17 in linkage group 3, complete
              sequence
          Length = 226081

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      taacaataataaatattctta 24
              |||||||||||||||||||||
Sbjct: 126503 taacaataataaatattctta 126483

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>gb|AC126007.16| Medicago truncatula clone mth2-11o4, complete sequence
          Length = 106747

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   aacaaattttgttccaacatc 140
             |||||||||||||||||||||
Sbjct: 93517 aacaaattttgttccaacatc 93537

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>gb|AC103785.4| Homo sapiens chromosome 8, clone RP11-727C12, complete sequence
          Length = 93174

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 611  tacgacatctgcaggaatgga 631
            |||||||||||||||||||||
Sbjct: 1070 tacgacatctgcaggaatgga 1090

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>emb|BX927129.10| Zebrafish DNA sequence from clone DKEY-158N21 in linkage group 13,
              complete sequence
          Length = 154491

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    gttttaacaaattttgttcca 135
              |||||||||||||||||||||
Sbjct: 120549 gttttaacaaattttgttcca 120529

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>gb|AC096543.2| Homo sapiens chromosome 1 clone RP11-335E6, complete sequence
          Length = 162837

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 2     aataacaataataaatattcttata 26
             ||||||||||||||||||| |||||
Sbjct: 67510 aataacaataataaatattgttata 67534

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>emb|AL935282.14| Zebrafish DNA sequence from clone CH211-281O21 in linkage group 2,
             complete sequence
          Length = 173134

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     taacaataataaatattctta 24
             |||||||||||||||||||||
Sbjct: 81401 taacaataataaatattctta 81421

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>gb|AC153383.1| Mus musculus 6 BAC RP23-168L2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197962

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     caataacaataataaatatt 20
             ||||||||||||||||||||
Sbjct: 43697 caataacaataataaatatt 43716

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>gb|AC005687.1| Arabidopsis thaliana BAC F1I21 from chromosome 1, near 59 cM, complete
             sequence
          Length = 129271

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aataacaataataaatattc 21
             ||||||||||||||||||||
Sbjct: 27271 aataacaataataaatattc 27252

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>gb|AC102205.8| Mus musculus chromosome 7, clone RP24-194L15, complete sequence
          Length = 163490

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    ggaacctgagaaatcacatg 205
              ||||||||||||||||||||
Sbjct: 156499 ggaacctgagaaatcacatg 156480

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>gb|AC167724.6| Mus musculus 10 BAC RP23-331P17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 230186

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      caataacaataataaatatt 20
              ||||||||||||||||||||
Sbjct: 105903 caataacaataataaatatt 105884

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>gb|AC161440.8| Mus musculus chromosome 7, clone RP23-309B10, complete sequence
          Length = 181423

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 186  ggaacctgagaaatcacatg 205
            ||||||||||||||||||||
Sbjct: 5091 ggaacctgagaaatcacatg 5072

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>gb|AC134546.4| Mus musculus BAC clone RP24-471H17 from chromosome 18, complete
             sequence
          Length = 208921

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   agcaggttttaacaaatttt 129
             ||||||||||||||||||||
Sbjct: 66327 agcaggttttaacaaatttt 66346

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>ref|XM_391681.1| Gibberella zeae PH-1 chromosome linkage group 14 hypothetical protein
            (FG11505.1) partial mRNA
          Length = 4062

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  agcccttgttctcatcaaca 548
            ||||||||||||||||||||
Sbjct: 4015 agcccttgttctcatcaaca 3996

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>emb|AL807378.5| Zebrafish DNA sequence from clone CH211-215A18 in linkage group 7
             Contains three CpG islands, complete sequence
          Length = 198700

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     caataacaataataaatatt 20
             ||||||||||||||||||||
Sbjct: 29765 caataacaataataaatatt 29784

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>gb|AC090160.6| Homo sapiens chromosome 11, clone RP11-413N10, complete sequence
          Length = 170008

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      ataataaatattcttataca 28
              ||||||||||||||||||||
Sbjct: 104502 ataataaatattcttataca 104483

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>emb|BX323842.8| Zebrafish DNA sequence from clone CH211-1M7, complete sequence
          Length = 162929

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   aaaacagcaaccctggaacg 514
             ||||||||||||||||||||
Sbjct: 22862 aaaacagcaaccctggaacg 22843

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>gb|AC100875.3| Homo sapiens chromosome 11, clone RP11-715M10, complete sequence
          Length = 195097

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      ataataaatattcttataca 28
              ||||||||||||||||||||
Sbjct: 140783 ataataaatattcttataca 140802

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>gb|AC068303.10| Homo sapiens 3 BAC RP11-324H4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172695

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    gcataaactgaggcacagca 386
              ||||||||||||||||||||
Sbjct: 167525 gcataaactgaggcacagca 167506

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>gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178752

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    gcataaactgaggcacagca 386
              ||||||||||||||||||||
Sbjct: 141537 gcataaactgaggcacagca 141556

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>gb|AC155909.9| Mus musculus 10 BAC RP24-477D23 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 195877

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   aggttttaacaaattttgtt 132
             ||||||||||||||||||||
Sbjct: 60818 aggttttaacaaattttgtt 60837

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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     atgatggggaaaaactgact 73
              ||||||||||||||||||||
Sbjct: 250194 atgatggggaaaaactgact 250213

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>emb|CR352301.7| Zebrafish DNA sequence from clone CH211-147A11 in linkage group 8,
              complete sequence
          Length = 176256

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      aataacaataataaatattc 21
              ||||||||||||||||||||
Sbjct: 133407 aataacaataataaatattc 133388

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>emb|BX571830.6| Zebrafish DNA sequence from clone DKEY-261I16 in linkage group 19,
            complete sequence
          Length = 143486

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    caataacaataataaatatt 20
            ||||||||||||||||||||
Sbjct: 3031 caataacaataataaatatt 3050

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>emb|CR376851.5| Zebrafish DNA sequence from clone DKEY-48N5 in linkage group 22,
             complete sequence
          Length = 51574

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aataacaataataaatattcttat 25
             ||||||||||||||||||| ||||
Sbjct: 13845 aataacaataataaatattattat 13868

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>emb|BX005306.20| Zebrafish DNA sequence from clone DKEY-78C7 in linkage group 20,
             complete sequence
          Length = 135228

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aataacaataataaatattc 21
             ||||||||||||||||||||
Sbjct: 32572 aataacaataataaatattc 32553

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>dbj|AP001148.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-762L8, complete
             sequences
          Length = 169340

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ataataaatattcttataca 28
             ||||||||||||||||||||
Sbjct: 36660 ataataaatattcttataca 36679

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>emb|CR936328.1| Medicago truncatula chromosome 5 clone mth4-1f18, COMPLETE SEQUENCE
          Length = 194592

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 623   aggaatggaaccattgaaaa 642
             ||||||||||||||||||||
Sbjct: 81188 aggaatggaaccattgaaaa 81169

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>dbj|D88448.1| Grapevine berry inner necrosis virus genes for RNA polymerase,
            movement protein, coat protein, partial and complete cds
          Length = 2469

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 581  aatggacagagctccaaaat 600
            ||||||||||||||||||||
Sbjct: 1118 aatggacagagctccaaaat 1099


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,154,840
Number of Sequences: 3902068
Number of extensions: 6154840
Number of successful extensions: 148590
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148402
Number of HSP's gapped (non-prelim): 176
length of query: 695
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 672
effective length of database: 17,143,297,704
effective search space: 11520296057088
effective search space used: 11520296057088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result