| Clone Name | rbags30g17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 121 bits (61), Expect = 4e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 626 acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685 |||||||||||| | ||||||||| ||||| ||||| |||||||||| | |||||||||| Sbjct: 108695 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 108636 Query: 686 agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734 | | | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 108635 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 108587 Score = 107 bits (54), Expect = 5e-20 Identities = 222/278 (79%) Strand = Plus / Minus Query: 320 cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379 |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| || Sbjct: 108995 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 108936 Query: 380 gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439 |||||| |||||||| | ||||| | || |||| |||||||| ||||||||||||| Sbjct: 108935 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 108876 Query: 440 cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499 || || || |||||||| || ||| | ||| || ||| || ||||| ||||| || Sbjct: 108875 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 108816 Query: 500 ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559 |||||||| |||||||| |||||||||||||| | | |||| ||| | | |||||||| Sbjct: 108815 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 108756 Query: 560 ctggtcctctggtgtaagaatcggcgatgaattgttcg 597 || |||||| |||| || || ||||||||| |||||| Sbjct: 108755 cttatcctcttgtgtgaggattggcgatgaactgttcg 108718
>ref|XM_475271.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1923 Score = 121 bits (61), Expect = 4e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 626 acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685 |||||||||||| | ||||||||| ||||| ||||| |||||||||| | |||||||||| Sbjct: 1611 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 1552 Query: 686 agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734 | | | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1551 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 1503 Score = 107 bits (54), Expect = 5e-20 Identities = 222/278 (79%) Strand = Plus / Minus Query: 320 cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379 |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| || Sbjct: 1911 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 1852 Query: 380 gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439 |||||| |||||||| | ||||| | || |||| |||||||| ||||||||||||| Sbjct: 1851 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 1792 Query: 440 cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499 || || || |||||||| || ||| | ||| || ||| || ||||| ||||| || Sbjct: 1791 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 1732 Query: 500 ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559 |||||||| |||||||| |||||||||||||| | | |||| ||| | | |||||||| Sbjct: 1731 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 1672 Query: 560 ctggtcctctggtgtaagaatcggcgatgaattgttcg 597 || |||||| |||| || || ||||||||| |||||| Sbjct: 1671 cttatcctcttgtgtgaggattggcgatgaactgttcg 1634
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 121 bits (61), Expect = 4e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 626 acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685 |||||||||||| | ||||||||| ||||| ||||| |||||||||| | |||||||||| Sbjct: 20981917 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 20981858 Query: 686 agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734 | | | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 20981857 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 20981809 Score = 107 bits (54), Expect = 5e-20 Identities = 222/278 (79%) Strand = Plus / Minus Query: 320 cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379 |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| || Sbjct: 20982217 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 20982158 Query: 380 gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439 |||||| |||||||| | ||||| | || |||| |||||||| ||||||||||||| Sbjct: 20982157 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 20982098 Query: 440 cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499 || || || |||||||| || ||| | ||| || ||| || ||||| ||||| || Sbjct: 20982097 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 20982038 Query: 500 ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559 |||||||| |||||||| |||||||||||||| | | |||| ||| | | |||||||| Sbjct: 20982037 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 20981978 Query: 560 ctggtcctctggtgtaagaatcggcgatgaattgttcg 597 || |||||| |||| || || ||||||||| |||||| Sbjct: 20981977 cttatcctcttgtgtgaggattggcgatgaactgttcg 20981940
>dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067N19, full insert sequence Length = 2746 Score = 121 bits (61), Expect = 4e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 626 acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685 |||||||||||| | ||||||||| ||||| ||||| |||||||||| | |||||||||| Sbjct: 2124 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 2065 Query: 686 agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734 | | | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2064 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 2016 Score = 107 bits (54), Expect = 5e-20 Identities = 222/278 (79%) Strand = Plus / Minus Query: 320 cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379 |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| || Sbjct: 2424 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 2365 Query: 380 gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439 |||||| |||||||| | ||||| | || |||| |||||||| ||||||||||||| Sbjct: 2364 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 2305 Query: 440 cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499 || || || |||||||| || ||| | ||| || ||| || ||||| ||||| || Sbjct: 2304 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 2245 Query: 500 ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559 |||||||| |||||||| |||||||||||||| | | |||| ||| | | |||||||| Sbjct: 2244 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 2185 Query: 560 ctggtcctctggtgtaagaatcggcgatgaattgttcg 597 || |||||| |||| || || ||||||||| |||||| Sbjct: 2184 cttatcctcttgtgtgaggattggcgatgaactgttcg 2147
>dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B01, full insert sequence Length = 2805 Score = 121 bits (61), Expect = 4e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 626 acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685 |||||||||||| | ||||||||| ||||| ||||| |||||||||| | |||||||||| Sbjct: 2180 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 2121 Query: 686 agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734 | | | |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2120 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 2072 Score = 107 bits (54), Expect = 5e-20 Identities = 222/278 (79%) Strand = Plus / Minus Query: 320 cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379 |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| || Sbjct: 2480 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 2421 Query: 380 gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439 |||||| |||||||| | ||||| | || |||| |||||||| ||||||||||||| Sbjct: 2420 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 2361 Query: 440 cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499 || || || |||||||| || ||| | ||| || ||| || ||||| ||||| || Sbjct: 2360 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 2301 Query: 500 ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559 |||||||| |||||||| |||||||||||||| | | |||| ||| | | |||||||| Sbjct: 2300 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 2241 Query: 560 ctggtcctctggtgtaagaatcggcgatgaattgttcg 597 || |||||| |||| || || ||||||||| |||||| Sbjct: 2240 cttatcctcttgtgtgaggattggcgatgaactgttcg 2203
>ref|NM_190821.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 109 bits (55), Expect = 1e-20 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand = Plus / Minus Query: 336 tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395 |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 1817 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 1762 Query: 396 aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455 |||||| | || ||||| |||||| ||||||||||| |||| || || ||||| || Sbjct: 1761 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 1704 Query: 456 ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515 |||| ||| ||||| || || ||| || ||||| || ||||| ||||| ||||||||| Sbjct: 1703 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 1644 Query: 516 atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575 || ||||||| |||||| |||||||||||| |||||||||||| || || ||| | ||| Sbjct: 1643 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 1584 Query: 576 agaatcggcgatgaattg 593 |||| || ||||||||| Sbjct: 1583 agaagaggtgatgaattg 1566
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 109 bits (55), Expect = 1e-20 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand = Plus / Plus Query: 336 tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395 |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 37892589 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 37892644 Query: 396 aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455 |||||| | || ||||| |||||| ||||||||||| |||| || || ||||| || Sbjct: 37892645 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 37892702 Query: 456 ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515 |||| ||| ||||| || || ||| || ||||| || ||||| ||||| ||||||||| Sbjct: 37892703 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 37892762 Query: 516 atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575 || ||||||| |||||| |||||||||||| |||||||||||| || || ||| | ||| Sbjct: 37892763 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 37892822 Query: 576 agaatcggcgatgaattg 593 |||| || ||||||||| Sbjct: 37892823 agaagaggtgatgaattg 37892840
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 109 bits (55), Expect = 1e-20 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand = Plus / Plus Query: 336 tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395 |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 113945 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 114000 Query: 396 aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455 |||||| | || ||||| |||||| ||||||||||| |||| || || ||||| || Sbjct: 114001 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 114058 Query: 456 ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515 |||| ||| ||||| || || ||| || ||||| || ||||| ||||| ||||||||| Sbjct: 114059 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 114118 Query: 516 atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575 || ||||||| |||||| |||||||||||| |||||||||||| || || ||| | ||| Sbjct: 114119 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 114178 Query: 576 agaatcggcgatgaattg 593 |||| || ||||||||| Sbjct: 114179 agaagaggtgatgaattg 114196
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 109 bits (55), Expect = 1e-20 Identities = 207/258 (80%), Gaps = 6/258 (2%) Strand = Plus / Plus Query: 336 tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395 |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 151837 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 151892 Query: 396 aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455 |||||| | || ||||| |||||| ||||||||||| |||| || || ||||| || Sbjct: 151893 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 151950 Query: 456 ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515 |||| ||| ||||| || || ||| || ||||| || ||||| ||||| ||||||||| Sbjct: 151951 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 152010 Query: 516 atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575 || ||||||| |||||| |||||||||||| |||||||||||| || || ||| | ||| Sbjct: 152011 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 152070 Query: 576 agaatcggcgatgaattg 593 |||| || ||||||||| Sbjct: 152071 agaagaggtgatgaattg 152088
>gb|AY108000.1| Zea mays PCO112270 mRNA sequence Length = 823 Score = 77.8 bits (39), Expect = 5e-11 Identities = 117/143 (81%) Strand = Plus / Minus Query: 417 tctttcctgttgccactggttggcgaatggctattgctcttgcacaatctgctgtgtctg 476 ||||||| |||||||||| |||| ||||||||||| || |||| || ||||| || | Sbjct: 348 tctttccggttgccactgcttggtgaatggctattacttttgcttaacctgctttgctta 289 Query: 477 tcatgcctcgacttcgtgtcgaattcttgacttttgcttatcccagggacgaattttctg 536 | |||||| ||| ||||| || || || ||||||||||| ||||||| |||||| ||| Sbjct: 288 ttatgcctttccttagtgtcaaactcctggcttttgcttataccagggatgaatttcctg 229 Query: 537 tacttgacacaccttagcatatc 559 ||||||||| |||||||||||| Sbjct: 228 tacttgacatcccttagcatatc 206
>emb|Z81449.1|CEC46F11 Caenorhabditis elegans Cosmid C46F11, complete sequence Length = 34841 Score = 44.1 bits (22), Expect = 0.66 Identities = 24/25 (96%) Strand = Plus / Plus Query: 20 tttcttnaaaacttgtgtttttata 44 |||||| |||||||||||||||||| Sbjct: 14854 tttcttaaaaacttgtgtttttata 14878
>emb|BX842634.1| Neurospora crassa DNA linkage group I BAC contig B16B8 Length = 138191 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 cgtttcttttcagttgatttct 308 |||||||||||||||||||||| Sbjct: 3797 cgtttcttttcagttgatttct 3776
>gb|U41032.1| Caenorhabditis elegans cosmid B0302, complete sequence Length = 30213 Score = 44.1 bits (22), Expect = 0.66 Identities = 25/26 (96%) Strand = Plus / Minus Query: 672 atatctccattggcagctctagattt 697 ||||||||| |||||||||||||||| Sbjct: 10730 atatctccactggcagctctagattt 10705
>gb|AC004862.1| Homo sapiens PAC clone RP4-697H17 from 7, complete sequence Length = 158811 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 aactaaacattagatagtttttaca 74 |||||||||||||||||| |||||| Sbjct: 32631 aactaaacattagatagtatttaca 32655
>gb|DQ173437.1| Pichia jadinii malic enzyme mRNA, complete cds Length = 1926 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 ctcttgcacaatctgctgtgt 473 ||||||||||||||||||||| Sbjct: 1377 ctcttgcacaatctgctgtgt 1357
>gb|AC009804.2| Homo sapiens 12 BAC RP11-411G2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 140151 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 atggtatatgatacaatgttt 120 ||||||||||||||||||||| Sbjct: 4691 atggtatatgatacaatgttt 4711
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 720 acgacaagctcaagggatatgtgct 744 |||||||||||||||| |||||||| Sbjct: 3199526 acgacaagctcaagggctatgtgct 3199502 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,009,203 Number of Sequences: 3902068 Number of extensions: 6009203 Number of successful extensions: 110697 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110540 Number of HSP's gapped (non-prelim): 148 length of query: 748 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 725 effective length of database: 17,143,297,704 effective search space: 12428890835400 effective search space used: 12428890835400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)