ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags30g17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome... 121 4e-24
2ref|XM_475271.1| Oryza sativa (japonica cultivar-group), predic... 121 4e-24
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 121 4e-24
4dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 4e-24
5dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 4e-24
6ref|NM_190821.1| Oryza sativa (japonica cultivar-group), predic... 109 1e-20
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
8dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
9dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
10gb|AY108000.1| Zea mays PCO112270 mRNA sequence 78 5e-11
11emb|Z81449.1|CEC46F11 Caenorhabditis elegans Cosmid C46F11, comp... 44 0.66
12emb|BX842634.1| Neurospora crassa DNA linkage group I BAC contig... 44 0.66
13gb|U41032.1| Caenorhabditis elegans cosmid B0302, complete sequence 44 0.66
14gb|AC004862.1| Homo sapiens PAC clone RP4-697H17 from 7, complet... 42 2.6
15gb|DQ173437.1| Pichia jadinii malic enzyme mRNA, complete cds 42 2.6
16gb|AC009804.2| Homo sapiens 12 BAC RP11-411G2 (Roswell Park Canc... 42 2.6
17dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 2.6

>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21,
              complete sequence
          Length = 137650

 Score =  121 bits (61), Expect = 4e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                          
Query: 626    acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685
              |||||||||||| | ||||||||| ||||| ||||| |||||||||| | ||||||||||
Sbjct: 108695 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 108636

                                                               
Query: 686    agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734
              |  | | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 108635 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 108587



 Score =  107 bits (54), Expect = 5e-20
 Identities = 222/278 (79%)
 Strand = Plus / Minus

                                                                          
Query: 320    cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379
              |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| ||
Sbjct: 108995 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 108936

                                                                          
Query: 380    gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439
              |||||| ||||||||  | ||||| | ||  ||||  ||||||||  |||||||||||||
Sbjct: 108935 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 108876

                                                                          
Query: 440    cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499
               || || || ||||||||   || |||  | ||| ||  ||| || ||||| ||||| ||
Sbjct: 108875 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 108816

                                                                          
Query: 500    ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559
               |||||||| |||||||| |||||||||||||| | | |||| |||  | | ||||||||
Sbjct: 108815 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 108756

                                                    
Query: 560    ctggtcctctggtgtaagaatcggcgatgaattgttcg 597
              ||  |||||| |||| || || ||||||||| ||||||
Sbjct: 108755 cttatcctcttgtgtgaggattggcgatgaactgttcg 108718



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>ref|XM_475271.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1923

 Score =  121 bits (61), Expect = 4e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 626  acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685
            |||||||||||| | ||||||||| ||||| ||||| |||||||||| | ||||||||||
Sbjct: 1611 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 1552

                                                             
Query: 686  agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734
            |  | | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1551 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 1503



 Score =  107 bits (54), Expect = 5e-20
 Identities = 222/278 (79%)
 Strand = Plus / Minus

                                                                        
Query: 320  cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379
            |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| ||
Sbjct: 1911 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 1852

                                                                        
Query: 380  gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439
            |||||| ||||||||  | ||||| | ||  ||||  ||||||||  |||||||||||||
Sbjct: 1851 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 1792

                                                                        
Query: 440  cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499
             || || || ||||||||   || |||  | ||| ||  ||| || ||||| ||||| ||
Sbjct: 1791 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 1732

                                                                        
Query: 500  ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559
             |||||||| |||||||| |||||||||||||| | | |||| |||  | | ||||||||
Sbjct: 1731 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 1672

                                                  
Query: 560  ctggtcctctggtgtaagaatcggcgatgaattgttcg 597
            ||  |||||| |||| || || ||||||||| ||||||
Sbjct: 1671 cttatcctcttgtgtgaggattggcgatgaactgttcg 1634



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  121 bits (61), Expect = 4e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 626      acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685
                |||||||||||| | ||||||||| ||||| ||||| |||||||||| | ||||||||||
Sbjct: 20981917 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 20981858

                                                                 
Query: 686      agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734
                |  | | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 20981857 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 20981809



 Score =  107 bits (54), Expect = 5e-20
 Identities = 222/278 (79%)
 Strand = Plus / Minus

                                                                            
Query: 320      cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379
                |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| ||
Sbjct: 20982217 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 20982158

                                                                            
Query: 380      gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439
                |||||| ||||||||  | ||||| | ||  ||||  ||||||||  |||||||||||||
Sbjct: 20982157 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 20982098

                                                                            
Query: 440      cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499
                 || || || ||||||||   || |||  | ||| ||  ||| || ||||| ||||| ||
Sbjct: 20982097 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 20982038

                                                                            
Query: 500      ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559
                 |||||||| |||||||| |||||||||||||| | | |||| |||  | | ||||||||
Sbjct: 20982037 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 20981978

                                                      
Query: 560      ctggtcctctggtgtaagaatcggcgatgaattgttcg 597
                ||  |||||| |||| || || ||||||||| ||||||
Sbjct: 20981977 cttatcctcttgtgtgaggattggcgatgaactgttcg 20981940



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>dbj|AK121670.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067N19, full
            insert sequence
          Length = 2746

 Score =  121 bits (61), Expect = 4e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 626  acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685
            |||||||||||| | ||||||||| ||||| ||||| |||||||||| | ||||||||||
Sbjct: 2124 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 2065

                                                             
Query: 686  agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734
            |  | | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2064 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 2016



 Score =  107 bits (54), Expect = 5e-20
 Identities = 222/278 (79%)
 Strand = Plus / Minus

                                                                        
Query: 320  cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379
            |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| ||
Sbjct: 2424 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 2365

                                                                        
Query: 380  gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439
            |||||| ||||||||  | ||||| | ||  ||||  ||||||||  |||||||||||||
Sbjct: 2364 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 2305

                                                                        
Query: 440  cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499
             || || || ||||||||   || |||  | ||| ||  ||| || ||||| ||||| ||
Sbjct: 2304 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 2245

                                                                        
Query: 500  ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559
             |||||||| |||||||| |||||||||||||| | | |||| |||  | | ||||||||
Sbjct: 2244 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 2185

                                                  
Query: 560  ctggtcctctggtgtaagaatcggcgatgaattgttcg 597
            ||  |||||| |||| || || ||||||||| ||||||
Sbjct: 2184 cttatcctcttgtgtgaggattggcgatgaactgttcg 2147



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>dbj|AK064776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B01, full
            insert sequence
          Length = 2805

 Score =  121 bits (61), Expect = 4e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                        
Query: 626  acccttttgtgtcgatgaacggacaggagatttgataggagaccttatatctccattggc 685
            |||||||||||| | ||||||||| ||||| ||||| |||||||||| | ||||||||||
Sbjct: 2180 acccttttgtgttggtgaacggacgggagacttgatgggagaccttacacctccattggc 2121

                                                             
Query: 686  agctctagatttactgatgagatgatgaagccacacgacaagctcaagg 734
            |  | | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2120 atttttggatttactgatgagatgatggagccacacgacaagctcaagg 2072



 Score =  107 bits (54), Expect = 5e-20
 Identities = 222/278 (79%)
 Strand = Plus / Minus

                                                                        
Query: 320  cagaccatcaagcctgtcaattaaatccaaagcctttgtcctatcaatctcgaagtctat 379
            |||||||||||||| ||| ||||| |||||||| || |||||||| |||| |||||| ||
Sbjct: 2480 cagaccatcaagccggtcgattaagtccaaagctttggtcctatccatctggaagtcgat 2421

                                                                        
Query: 380  gacagggagcatggagaacctcctaaatggtagcagatctttcctgttgccactggttgg 439
            |||||| ||||||||  | ||||| | ||  ||||  ||||||||  |||||||||||||
Sbjct: 2420 gacaggaagcatggatgatctcctgagtgaaagcatgtctttcctactgccactggttgg 2361

                                                                        
Query: 440  cgaatggctattgctcttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaa 499
             || || || ||||||||   || |||  | ||| ||  ||| || ||||| ||||| ||
Sbjct: 2360 agattgactgttgctctttatcagtctaatctgtttgctatgtcttgactttgtgtcaaa 2301

                                                                        
Query: 500  ttcttgacttttgcttatcccagggacgaattttctgtacttgacacaccttagcatatc 559
             |||||||| |||||||| |||||||||||||| | | |||| |||  | | ||||||||
Sbjct: 2300 ctcttgactcttgcttattccagggacgaatttccggaacttaacattcttcagcatatc 2241

                                                  
Query: 560  ctggtcctctggtgtaagaatcggcgatgaattgttcg 597
            ||  |||||| |||| || || ||||||||| ||||||
Sbjct: 2240 cttatcctcttgtgtgaggattggcgatgaactgttcg 2203



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>ref|NM_190821.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1854

 Score =  109 bits (55), Expect = 1e-20
 Identities = 207/258 (80%), Gaps = 6/258 (2%)
 Strand = Plus / Minus

                                                                        
Query: 336  tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395
            |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| |||||    
Sbjct: 1817 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 1762

                                                                        
Query: 396  aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455
              |||||| | || |||||  |||||| ||||||||||| |||| || || ||||| || 
Sbjct: 1761 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 1704

                                                                        
Query: 456  ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515
            |||| ||| ||||| ||  ||  ||| || ||||| || ||||| ||||| |||||||||
Sbjct: 1703 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 1644

                                                                        
Query: 516  atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575
            || ||||||| |||||| ||||||||||||  |||||||||||| || || ||| | |||
Sbjct: 1643 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 1584

                              
Query: 576  agaatcggcgatgaattg 593
            ||||  || |||||||||
Sbjct: 1583 agaagaggtgatgaattg 1566



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 1e-20
 Identities = 207/258 (80%), Gaps = 6/258 (2%)
 Strand = Plus / Plus

                                                                            
Query: 336      tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395
                |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| |||||    
Sbjct: 37892589 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 37892644

                                                                            
Query: 396      aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455
                  |||||| | || |||||  |||||| ||||||||||| |||| || || ||||| || 
Sbjct: 37892645 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 37892702

                                                                            
Query: 456      ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515
                |||| ||| ||||| ||  ||  ||| || ||||| || ||||| ||||| |||||||||
Sbjct: 37892703 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 37892762

                                                                            
Query: 516      atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575
                || ||||||| |||||| ||||||||||||  |||||||||||| || || ||| | |||
Sbjct: 37892763 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 37892822

                                  
Query: 576      agaatcggcgatgaattg 593
                ||||  || |||||||||
Sbjct: 37892823 agaagaggtgatgaattg 37892840



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>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0491F11
          Length = 152274

 Score =  109 bits (55), Expect = 1e-20
 Identities = 207/258 (80%), Gaps = 6/258 (2%)
 Strand = Plus / Plus

                                                                          
Query: 336    tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395
              |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| |||||    
Sbjct: 113945 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 114000

                                                                          
Query: 396    aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455
                |||||| | || |||||  |||||| ||||||||||| |||| || || ||||| || 
Sbjct: 114001 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 114058

                                                                          
Query: 456    ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515
              |||| ||| ||||| ||  ||  ||| || ||||| || ||||| ||||| |||||||||
Sbjct: 114059 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 114118

                                                                          
Query: 516    atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575
              || ||||||| |||||| ||||||||||||  |||||||||||| || || ||| | |||
Sbjct: 114119 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 114178

                                
Query: 576    agaatcggcgatgaattg 593
              ||||  || |||||||||
Sbjct: 114179 agaagaggtgatgaattg 114196



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>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0008G24
          Length = 152736

 Score =  109 bits (55), Expect = 1e-20
 Identities = 207/258 (80%), Gaps = 6/258 (2%)
 Strand = Plus / Plus

                                                                          
Query: 336    tcaattaaatccaaagcctttgtcctatcaatctcgaagtctatgacagggagcatggag 395
              |||||||| |||| ||| ||||||||||| ||||| ||||| |||||||| |||||    
Sbjct: 151837 tcaattaagtccatagcttttgtcctatcgatctcaaagtcgatgacaggaagcat---- 151892

                                                                          
Query: 396    aacctcctaaatggtagcagatctttcctgttgccactggttggcgaatggctattgctc 455
                |||||| | || |||||  |||||| ||||||||||| |||| || || ||||| || 
Sbjct: 151893 --cctcctgattgatagcaactctttcatgttgccactgcttggtgagtgactattactt 151950

                                                                          
Query: 456    ttgcacaatctgctgtgtctgtcatgcctcgacttcgtgtcgaattcttgacttttgctt 515
              |||| ||| ||||| ||  ||  ||| || ||||| || ||||| ||||| |||||||||
Sbjct: 151951 ttgctcaacctgctttgcttgctatgtctggacttagtctcgaactcttggcttttgctt 152010

                                                                          
Query: 516    atcccagggacgaattttctgtacttgacacaccttagcatatcctggtcctctggtgta 575
              || ||||||| |||||| ||||||||||||  |||||||||||| || || ||| | |||
Sbjct: 152011 ataccagggatgaatttcctgtacttgacatcccttagcatatcttgatcttcttgggta 152070

                                
Query: 576    agaatcggcgatgaattg 593
              ||||  || |||||||||
Sbjct: 152071 agaagaggtgatgaattg 152088



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>gb|AY108000.1| Zea mays PCO112270 mRNA sequence
          Length = 823

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 117/143 (81%)
 Strand = Plus / Minus

                                                                       
Query: 417 tctttcctgttgccactggttggcgaatggctattgctcttgcacaatctgctgtgtctg 476
           ||||||| |||||||||| |||| ||||||||||| || ||||  || ||||| ||  | 
Sbjct: 348 tctttccggttgccactgcttggtgaatggctattacttttgcttaacctgctttgctta 289

                                                                       
Query: 477 tcatgcctcgacttcgtgtcgaattcttgacttttgcttatcccagggacgaattttctg 536
           | ||||||   ||| ||||| || || || ||||||||||| ||||||| |||||| |||
Sbjct: 288 ttatgcctttccttagtgtcaaactcctggcttttgcttataccagggatgaatttcctg 229

                                  
Query: 537 tacttgacacaccttagcatatc 559
           |||||||||  ||||||||||||
Sbjct: 228 tacttgacatcccttagcatatc 206



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>emb|Z81449.1|CEC46F11 Caenorhabditis elegans Cosmid C46F11, complete sequence
          Length = 34841

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 20    tttcttnaaaacttgtgtttttata 44
             |||||| ||||||||||||||||||
Sbjct: 14854 tttcttaaaaacttgtgtttttata 14878



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>emb|BX842634.1| Neurospora crassa DNA linkage group I BAC contig B16B8
          Length = 138191

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 287  cgtttcttttcagttgatttct 308
            ||||||||||||||||||||||
Sbjct: 3797 cgtttcttttcagttgatttct 3776



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>gb|U41032.1| Caenorhabditis elegans cosmid B0302, complete sequence
          Length = 30213

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 672   atatctccattggcagctctagattt 697
             ||||||||| ||||||||||||||||
Sbjct: 10730 atatctccactggcagctctagattt 10705



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>gb|AC004862.1| Homo sapiens PAC clone RP4-697H17 from 7, complete sequence
          Length = 158811

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 50    aactaaacattagatagtttttaca 74
             |||||||||||||||||| ||||||
Sbjct: 32631 aactaaacattagatagtatttaca 32655



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>gb|DQ173437.1| Pichia jadinii malic enzyme mRNA, complete cds
          Length = 1926

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 453  ctcttgcacaatctgctgtgt 473
            |||||||||||||||||||||
Sbjct: 1377 ctcttgcacaatctgctgtgt 1357



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>gb|AC009804.2| Homo sapiens 12 BAC RP11-411G2 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 140151

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 100  atggtatatgatacaatgttt 120
            |||||||||||||||||||||
Sbjct: 4691 atggtatatgatacaatgttt 4711



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 720     acgacaagctcaagggatatgtgct 744
               |||||||||||||||| ||||||||
Sbjct: 3199526 acgacaagctcaagggctatgtgct 3199502


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,009,203
Number of Sequences: 3902068
Number of extensions: 6009203
Number of successful extensions: 110697
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110540
Number of HSP's gapped (non-prelim): 148
length of query: 748
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 725
effective length of database: 17,143,297,704
effective search space: 12428890835400
effective search space used: 12428890835400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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