>AMX1_CAEEL (Q21988) Amine oxidase family member 1|
          Length = 783

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 449 LDNPPFLQREKISTVRKNFHFATLLIHEEGRCFL--RNLLDGELGLDGRQIVDAV 607
           ++NP  L  E+I    +N +F   LI E GRCF   R  LD ++ L    ++DA+
Sbjct: 370 INNPITLLCEQIGIKYRNSNFFCPLIDENGRCFTLERKELDDQVDLHYNNVLDAI 424

>SUHW4_HUMAN (Q6N043) Suppressor of hairy wing homolog 4|
          Length = 979

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
 Frame = -2

Query: 486 LIFSLCRKGGLSKYYDGKSQSFACMSEVRCLEDLPKKRPYN----KKMKPCRSHVEIDGD 319
           L+F L +  GLS Y  G + S A MSE   L   P     N    KK KP  S V     
Sbjct: 144 LLFDLTQDTGLSHYQGGPTLSMAGMSESSFLSKRPSTSEVNNVNPKKPKPSES-VSGANS 202

Query: 318 QRACP---APGSNNSSKVVAKPTSGSS 247
               P   +P   +S  ++AK T+ SS
Sbjct: 203 SAVLPSVKSPSVTSSQAMLAKGTNTSS 229

>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2) (Siah-2) (hSiah2)
          Length = 324

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 58  PPXKNPHPQGTKKRREASPGQTL*VSTANPPSLLM--AGALVDGDGGRPVEHAGAAAPRH 231
           P  K P PQ       A+P     +S A P S  +  A A++ G GG     AG  +P+H
Sbjct: 14  PCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGG--GAGPVSPQH 71

Query: 232 HQV 240
           H++
Sbjct: 72  HEL 74

>PERC_AEDAE (P82600) Chorion peroxidase precursor (EC 1.11.1.7) [Contains:|
           Chorion peroxidase light chain; Chorion peroxidase heavy
           chain]
          Length = 791

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -2

Query: 441 DGKSQSFACMSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSKVVAKP 262
           D   Q+  CM+ + C+ D  KK      +KPC +   +DG    CP+   N +S  V + 
Sbjct: 51  DACEQNEVCMAPIECILDAKKK----AILKPCSTVPSVDG--ICCPSSEHNGTSSRVQQS 104

Query: 261 TSGSSCANLMM 229
           +   +  +L++
Sbjct: 105 SEEHAADHLVL 115

>SUHW4_MOUSE (Q68FE8) Suppressor of hairy wing homolog 4|
          Length = 974

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = -2

Query: 486 LIFSLCRKGGLSKYYDGKSQSFACMSEVRCLEDLPKKRPYN----KKMKPCRSHVEIDGD 319
           L+F L +  GLS Y  G + S A ++E   L   P     +    KK KP  +   ID  
Sbjct: 156 LLFDLTQDTGLSHYQGGPTLSIAGLNETSFLSKRPSGSDISSVNPKKPKPSENTSGID-- 213

Query: 318 QRACPAPGSNNSSKVVA---KPTSGSSCAN 238
             A     S  S  V++    P+ G++C++
Sbjct: 214 --ASSVISSEKSPSVISLQVVPSQGANCSS 241

>RS14B_STRCO (Q9X8K9) 30S ribosomal protein S14-2|
          Length = 101

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -1

Query: 274 SRQADLRELLRKPDD-GAERQLQHALQASRHPRQQERLPSVGREGSRLRLRVSVQGWLRV 98
           +R+A+L+E+LR+P    AER     L A R  R+Q R  S  R  +R ++    +G+LRV
Sbjct: 22  ARRAELKEVLRRPSSTEAER-----LAAQRELRRQPRDASPTRVRNRDQIDGRPRGYLRV 76

Query: 97  SSL 89
             L
Sbjct: 77  FGL 79

>LY10_HUMAN (Q13342) Nuclear body protein SP140 (Nuclear autoantigen Sp-140)|
           (Speckled 140 kDa) (LYSp100 protein)
           (Lymphoid-restricted homolog of Sp100)
          Length = 882

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = -2

Query: 414 MSEVRCLEDLPKKRPYNKKMKPCRSHVEIDGDQRACPAPGSNNSSKVVAKPTSGSSCANL 235
           M+ V  LED P+  PY K+      H   + D  A P    ++S++      S  SC  L
Sbjct: 145 MNNVNDLEDRPRLLPYGKQENSNACH---EMDDIAVPQEALSSSAR-CEPGFSSESCEQL 200

Query: 234 MMARSGSSSMLYRPPAIPVNKSAC 163
            + ++G       P  +P    +C
Sbjct: 201 ALPKAGGGDAEDAPSLLPGGGVSC 224

>RPOB_PROMT (Q46J22) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1095

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +1

Query: 22   CR-SLFTFDRLIGPPXKNPHPQGTKKRREASPGQTL*VSTANPPSLLMAGALVDGDGGRP 198
            CR  +  FD + GP   N   Q   K+    PG++   +  +P  LL    L DG  G P
Sbjct: 886  CRVKIVPFDEMYGPEMSNQTVQAYLKKAAKQPGKSWVYNPKDPGKLL----LKDGRTGEP 941

Query: 199  VEHAGAAAPRH 231
             +   A    H
Sbjct: 942  FDQPVAVGYAH 952

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 348  CRSHVEIDGDQRACPAPGSNNSSKVVAKPTSGSSCANLMMAR 223
            C  H +ID  Q ACP      SS  ++ P+    C N +  R
Sbjct: 4914 CNQHCDIDRFQGACPTSPPPVSSAPLSSPSPAPGCDNAIPLR 4955


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,701,115
Number of Sequences: 219361
Number of extensions: 1780797
Number of successful extensions: 6549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6535
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)